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2022-12-20gnu: libgeotiff: Apply patch for building against proj 9.1.1.Felix Gruber
* gnu/packages/patches/libgeotiff-fix-tests-with-proj-9.1.1.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/geo.scm (libgeotiff): Apply it. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-20gnu: proj: Update to 9.1.1.Felix Gruber
* gnu/packages/geo.scm (proj): Update to 9.1.1. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-20read-print: Add special forms.Ludovic Courtès
* guix/read-print.scm (%special-forms): Add 'define-configuration' and 'match-record'.
2022-12-20services: opensmtpd: Add 'shepherd-requirement' field.Bruno Victal
* gnu/services/mail.scm (<opensmtpd-configuration>)[shepherd-requirement]: New field. (opensmtpd-shepherd-service): Honor it. * doc/guix.texi (Mail Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-20services: opensmtpd: Use 'match-record' instead of 'match'.Bruno Victal
* gnu/services/mail.scm (opensmtpd-shepherd-service) (opensmtpd-activation) (opensmtpd-set-gids): Use 'match-record' instead of 'match'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-20cpio: Skip test on inode numbers that don't fit on 32 bits.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/60202>. Reported by Christopher Baines <mail@cbaines.net>. * tests/cpio.scm (%test-file): New variable. ("file->cpio-header + write-cpio-header + read-cpio-header"): Use it. Skip test when the inode number of %TEST-FILE is too big.
2022-12-20doc: Avoid 'match' on the <udev-configuration> record.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/59907>. Reported by MANCINI Raffael <Raffael.MANCINI@mnhn.lu>. * doc/guix.texi (Service Types and Services): Change 'udev-configuration' example to avoid 'match'.
2022-12-20tests: Adjust 'guix package' test to latest package search metrics.Ludovic Courtès
With commit bbcd06e56c06376e640a7ac81a7109e7135a20f2, the command "guix package -s '^fileutils$'" would match the 'ocaml-fileutils' package, because its 'package-upstream-name*' is "fileutils". Work around it. Reported by Vagrant Cascadian. * tests/guix-package.sh: Change "fileutils" example to use a different package name.
2022-12-20gnu: seabios: Limit to i686-linux and x86_64-linux.Efraim Flashner
* gnu/packages/firmware.scm (seabios)[supported-systems]: New field.
2022-12-20Revert "gnu: QEMU: Unbundle SeaBIOS."Efraim Flashner
This reverts commit 814214c369851da50e7006266f718b2d9324ada0. SeaBIOS is only buildable on i686-linux machines and has flags set to force building for i386 so that it works from x86_64-linux. This commit breaks qemu and qemu-minimal on all other architectures.
2022-12-20gnu: openjdk18: Update to 18.0.2.Greg Hogan
* gnu/packages/java.scm (openjdk18): Update to 18.0.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-12-20gnu: openjdk17: Update to 17.0.5.Greg Hogan
* gnu/packages/java.scm (openjdk17): Update to 17.0.5. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-12-20gnu: openjdk16: Update to 16.0.2.Greg Hogan
* gnu/packages/java.scm (openjdk16): Update to 16.0.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-12-20gnu: openjdk15: Update to 15.0.9.Greg Hogan
* gnu/packages/java.scm (openjdk15): Update to 15.0.9. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-12-20gnu: openjdk13: Update to 13.0.13.Greg Hogan
* gnu/packages/java.scm (openjdk13): Update to 13.0.13. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-12-20gnu: openjdk11: Fix find-files syntax.Efraim Flashner
* gnu/packages/java.scm (openjdk11)[source]: Remove extra characters from find-files invocation. [arguments]: Remove extra characters from find-files invocations in multiple phases.
2022-12-20gnu: openjdk11: Update to 11.0.17.Greg Hogan
* gnu/packages/java.scm (openjdk11): Update to 11.0.17. [source]: Fix source file-name. [native-inputs]: Add bash. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-12-18gnu: audacity: Update to 3.2.2.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (audacity): Update to 3.2.2.
2022-12-18gnu: audacity: Be less alpha.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (audacity)[arguments]: Set AUDACITY_BUILD_LEVEL in the #:configure-flags.
2022-12-20gnu: Add ipxe-qemu.Marius Bakke
* gnu/packages/bootloaders.scm (ipxe-qemu): New variable.
2022-12-20gnu: Add edk2-tools.Marius Bakke
* gnu/packages/firmware.scm (edk2-tools): New variable.
2022-12-20gnu: emacs-fzf: Fix version.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-fzf)[version]: Set to 0.2. Last tagged version and Version keyword from main file differ. We use the highest one (the tag).
2022-12-20gnu: p2c: Update to 2.02.Ricardo Wurmus
* gnu/packages/pascal.scm (p2c): Update to 2.02. [arguments]: Use gexp. [native-inputs]: Add unzip.
2022-12-20gnu: r-kegggraph: Update to 1.58.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.58.3.
2022-12-20gnu: r-scran: Update to 1.26.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scran): Update to 1.26.1.
2022-12-20gnu: r-scuttle: Update to 1.8.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.3.
2022-12-20gnu: r-chromvar: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.20.1.
2022-12-20gnu: r-s4vectors: Update to 0.36.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.36.1.
2022-12-20gnu: r-preprocesscore: Update to 1.60.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.60.1.
2022-12-20gnu: r-biocviews: Update to 1.66.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.1. [native-inputs]: Add r-knitr.
2022-12-20gnu: r-rcistarget: Update to 1.18.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.18.2.
2022-12-20gnu: r-opencyto: Update to 2.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.10.1. [propagated-inputs]: Remove r-clue, r-flowstats, r-gtools, r-ks, r-lattice, r-mass, r-plyr, r-r-utils, r-rcpp, and r-rrcov; add r-bh and r-cpp11.
2022-12-20gnu: r-ggcyto: Update to 1.26.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.26.4.
2022-12-20gnu: r-rsubread: Update to 2.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.12.2.
2022-12-20gnu: r-iclusterplus: Update to 1.34.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.34.2.
2022-12-20gnu: r-aucell: Update to 1.20.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.20.2. [propagated-inputs]: Add r-matrix.
2022-12-20gnu: r-clusterexperiment: Update to 2.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.18.1.
2022-12-20gnu: r-enrichplot: Update to 1.18.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.18.3.
2022-12-20gnu: r-sigpathway: Update to 1.66.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.66.1.
2022-12-20gnu: r-linnorm: Update to 2.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.22.1.
2022-12-20gnu: r-lpsymphony: Update to 1.26.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.26.2.
2022-12-20gnu: r-dnacopy: Update to 1.72.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.72.2.
2022-12-20gnu: r-glmgampoi: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.10.1.
2022-12-20gnu: r-diffbind: Update to 3.8.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.8.3.
2022-12-20gnu: r-oligo: Update to 1.62.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.62.1.
2022-12-20gnu: r-tximport: Update to 1.26.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.26.1.
2022-12-20gnu: r-scmap: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.20.1.
2022-12-20gnu: r-lfa: Update to 1.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.1.
2022-12-20gnu: r-impute: Update to 1.72.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-impute): Update to 1.72.2.
2022-12-20gnu: r-genomicranges: Update to 1.50.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.50.2.
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