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2017-08-02gnu: r-rtracklayer: Update to 1.36.4....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.4. Roel Janssen
2017-08-02gnu: r-genomicfeatures: Update to 1.28.4....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.4. Roel Janssen
2017-08-02gnu: r-copywriter: Update to 2.8.1....* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.1. Roel Janssen
2017-08-02gnu: r-sva: Update to 3.24.4....* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.4. Roel Janssen
2017-08-02gnu: r-rsqlite: Update to 2.0....* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0. Roel Janssen
2017-08-02gnu: Add r-blob....* gnu/packages/statistics.scm (r-blob): New variable. Roel Janssen
2017-08-02gnu: Add r-pkgconfig....* gnu/packages/statistics.scm (r-pkgconfig): New variable. Roel Janssen
2017-08-02pull: Honor '--no-grafts'....* guix/scripts/pull.scm (guix-pull): Parameterize %GRAFT? as a function of OPTS. Ludovic Courtès
2017-08-02pull: Use the commit ID as the version string....* guix/scripts/pull.scm (build-from-source): Add #:commit parameter. Pass it to BUILD. (build-and-install): Add #:commit and pass it to 'build-from-source'. (guix-pull): Pass #:commit to 'build-and-install'. Ludovic Courtès
2017-08-02pull: Fetch source code from Git....* guix/scripts/pull.scm (%snapshot-url, with-environment-variable) (with-PATH): Remove. (ensure-guile-git!): New procedure. (%repository-url): New variable. (%default-options): Add 'repository-url' and 'ref'. (show-help, %options): Add '--commit' and '--url'. (temporary-directory, first-directory, interned-then-deleted) (unpack): Remove. (build-from-source): Rename 'tarball' to 'source'. Remove call to 'unpack'. (build-and-install): Rename 'tarball' to 'source'. (honor-lets-encrypt-certificates!, report-git-error): New procedures. (with-git-error-handling): New macro. (guix-pull)[fetch-tarball]: Remove. Wrap body in 'with-git-error-handling'. Rewrite to use 'latest-repository-commit'. * build-aux/build-self.scm (build): Print an error message and exit when GUILE-GIT is #f. * doc/guix.texi (Invoking guix pull): Mention Git. Document '--commit' and '--branch'. Ludovic Courtès
2017-08-02build: Make Guile-Git a hard requirement....* configure.ac: Error out when (git) is missing. * doc/guix.texi (Requirements): Mention Guile-Git. * Makefile.am (MODULES): Add guix/git.scm unconditionally. Ludovic Courtès
2017-08-01gnu: re2: Update to 2017-08-01....* gnu/packages/regex.scm (re2): Update to 2017-08-01. Marius Bakke
2017-08-01gnu: maim: Update to 5.4.66....* gnu/packages/xdisorg.scm (maim): Update to 5.4.66. Marius Bakke
2017-08-01gnu: slop: Update to 7.3.48....* gnu/packages/xdisorg.scm (slop): Update to 7.3.48. Marius Bakke
2017-08-01gnu: git: Update to 2.13.4....* gnu/packages/version-control.scm (git): Update to 2.13.4. Marius Bakke
2017-08-01gnu: r-foreign: Update hash after upstream tarball change....* gnu/packages/statistics.scm (r-foreign): Update hash. The only difference in the tarball is the metadata. The contents are identical. Roel Janssen
2017-08-01gnu: r-foreign: Remove duplicate recipe....* gnu/packages/statistics.scm (r-foreign): Remove duplicate recipe. Roel Janssen
2017-08-01graph: Provide access to the package record in the emit functions....* guix/graph.scm (export-graph): Pass the node to the emit functions, instead of the node's label. Roel Janssen
2017-08-01guix package: Allow `guix package -u' to fuction as before....This is a follow up to 6ddf97f81bb99a73f00e30ad5fc19577872b5b49 * guix/scripts/package.scm (%options) <"-u">: Only check for a flag when there is an ARG after '-u'. Efraim Flashner
2017-08-01gnu: rapidjson: Update to 1.1.0....* gnu/packages/web.scm (rapidjson): Update to 1.1.0. [source]: Remove snippet. Leo Famulari
2017-08-01gnu: Add pidentd....* gnu/packages/networking.scm (pidentd): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> ng0
2017-08-01gnu: hyperrogue: Update to 10.0e....* gnu/packages/games.scm (hyperrogue): Update to 10.0e. [arguments]: Adjust accordingly. Kei Kebreau
2017-08-01gnu: metabat: Limit to x86_64 and i686 only....* gnu/packages/bioinformatics.scm (metabat)[supported-systems]: New field. Efraim Flashner
2017-08-01gnu: Add emacs-yasnippet-snippets....* gnu/packages/emacs.scm (emacs-yasnippet-snippets): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer
2017-08-01gnu: emacs-yasnippet: Upgrade to 0.12.0....* gnu/packages/emacs.scm (emacs-yasnippet): Upgrade to 0.12.0. [source]: Remove an uninstalled directory from yas-snippet-dirs. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer
2017-08-01gnu: guile-ssh: Update to 0.11.2....* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2. [source]: Remove 'patches', 'modules', and 'snippet'. * gnu/packages/patches/guile-ssh-channel-finalization.patch, gnu/packages/patches/guile-ssh-double-free.patch, gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove them. Ludovic Courtès
2017-08-01gnu: artanis: Unbundled guile-json and version according to documentation....* gnu/packages/guile.scm (artanis): Unbundled guile-json and version according to documentation. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Adonay Felipe Nogueira
2017-08-01lint: formatting: Detect sexp boundaries....* guix/scripts/lint.scm (report-formatting-issues)[last-line]: Remove. [sexp-last-line]: New procedure. Use it. Ludovic Courtès
2017-08-01gnu: python-pbr-minimal: Update to 3.0.1...* gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1 [source]: Update hash and remove patch. * gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Muriithi Frederick Muriuki
2017-08-01gnu: libgit2: Enable SHA-1 collision detection....* gnu/packages/version-control.scm (libgit2)[arguments]: Enable '-DUSE_SHA1DC' in #:configure-flags. Leo Famulari
2017-08-01gnu: ruby-bio-commandeer: Update to 0.2.0....* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.2.0. Ben Woodcroft
2017-07-31gnu: libmicrohttpd: Update to 0.9.55....* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.55. [arguments]: Add 'add-missing-LDFLAGS' phase. Ludovic Courtès
2017-07-31guix package: Warn when invoked with '-u -something'....Fixes <https://bugs.gnu.org/27820>. Reported by Hartmut Goebel <h.goebel@crazy-compilers.com>. * guix/scripts/package.scm (%options) <"-u">: Emit a warning when ARG starts with "-". Ludovic Courtès
2017-07-31gnu: xf86-video-intel: Update snapshot....* gnu/packages/xorg.scm (xf86-video-intel): Update to 2100efa. Introduce 'revision' variable. Ludovic Courtès
2017-07-31gnu: guile-bytestructures: Install .go files to lib/guile/X.Y....* gnu/packages/guile.scm (guile-bytestructures)[arguments]: Install .go files to OBJECT-DIR, defined as OUT/lib/guile/X.Y/site-ccache. Ludovic Courtès
2017-07-31gnu: tor: Remove '--enable-expensive-hardening' option....* gnu/packages/tor.scm (tor)[arguments]: Remove '--enable-expensive-hardening' option. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ng0
2017-07-31gnu: erlang: Update to 20.0....* gnu/packages/erlang.scm (erlang): Update to 20.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Peter Mikkelsen
2017-07-31gnu: network-manager: Add dependency on Newt....Suggested by Mark H Weaver. * gnu/packages/gnome.scm (network-manager)[inputs]: Add NEWT. Ludovic Courtès
2017-07-31gnu: guile-git: Skip faulty tests on non-x86_64....Reported by Mark H Weaver. * gnu/packages/guile.scm (guile-git)[arguments]: Add 'skip-tests' phase unless on x86_64-linux. Ludovic Courtès
2017-07-31gnu: libgit2: Add "debug" output....* gnu/packages/version-control.scm (libgit2)[outputs]: New field. Ludovic Courtès
2017-07-31gnu: libgit2: Update to 0.26.0....* gnu/packages/version-control.scm (libgit2): Update to 0.26.0. Remove "libgit2-use-after-free.patch". * gnu/packages/patches/libgit2-use-after-free.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Ludovic Courtès
2017-07-31gnu: efl: Add wayland support....* gnu/packages/enlightenment.scm (efl)[inputs]: Add wayland-protocols. Move mesa ... [propagated-inputs]: ... to here. Add libinput, libxkbcommon, wayland. [arguments]: Add flags to enable wayland, elput and drm. Efraim Flashner
2017-07-31gnu: gst-plugins-good: Update disable-failing-tests phase....* gnu/packages/gstreamer.scm (gst-plugins-good)[arguments]: Change the list of tests to disable during 'disable-failing-tests phase. Efraim Flashner
2017-07-30services: ntp: Use the NTP pool via the 'guix' zone....* gnu/services/networking.scm (%ntp-servers): Use *.guix.pool.ntp.org. Leo Famulari
2017-07-30gnu: automake: Add 1.15.1....* gnu/packages/autotools.scm (automake/latest): New variable. Ludovic Courtès
2017-07-30gnu: guix: Search .go files of dependencies in lib/guile/....* gnu/packages/package-management.scm (guix)[arguments]: Add (srfi srfi-26) to #:modules. Introduce 'gopath', distinct from 'path'. Ludovic Courtès
2017-07-30gnu: guix: Update snapshot....* gnu/packages/package-management.scm (guix): Update to 228a398. Ludovic Courtès
2017-07-30git-download: Remove call to 'canonicalize-path'....* guix/git-download.scm (git-predicate): Remove call to 'canonicalize-path' since this could lead to discrepancies. For instance it broke 'make update-guix-package' since it passes a non-canonical directory name. Ludovic Courtès
2017-07-30services: openssh: Extensions provide extra authorized keys....* gnu/services/ssh.scm (extend-openssh-authorized-keys): New procedure. (openssh-service-type)[compose, extend]: New fields. * doc/guix.texi (Networking Services): Document the extension. Ludovic Courtès
2017-07-30services: openssh: Add 'authorized-keys' field....* gnu/services/ssh.scm (<openssh-configuration>)[authorized-keys]: New field. (authorized-key-directory): New procedure. (openssh-config-file): Honor 'authorized-keys'. (openssh-activation): Use 'with-imported-modules'. Make /etc/ssh 755. Create /etc/ssh/authorized_keys.d. * doc/guix.texi (Networking Services): Document it. Ludovic Courtès