| Age | Commit message (Expand) | Author |
|---|
| 2019-08-09 | gnu: r-tidytree: Update to 0.2.6....* gnu/packages/cran.scm (r-tidytree): Update to 0.2.6.
| Ricardo Wurmus |
| 2019-08-09 | gnu: freebayes: Simplify and enable tests....* gnu/packages/bioinformatics.scm (freebayes)[arguments]: Enable tests; set
make flags; add phase "fix-tests"; fix both Makefiles in "fix-makefiles"
phase; move build of tabixpp and vcflib to separate phase
"build-tabixpp-and-vcflib"; simplify make invocations; remove custom "build"
phase.
| Ricardo Wurmus |
| 2019-08-09 | gnu: freebayes: Move bamtools to inputs....* gnu/packages/bioinformatics.scm (freebayes)[native-inputs]: Move bamtools
from here...
[inputs]: ...to here.
| Ricardo Wurmus |
| 2019-08-09 | gnu: guile-email: Update to 0.2.0....* gnu/packages/guile-xyz.scm (guile-email): Update to 0.2.0.
[source]: Update URI.
[native-inputs]: Remove autoconf and automake. Add lzip.
[arguments]: Add GUILE_AUTO_COMPILE=0 to #:make-flags.
[home-page]: Update URI.
[description]: Update description.
| Arun Isaac |
| 2019-08-09 | gnu: 4store: Remove unneeded build phase....* gnu/packages/databases.scm (4store)[arguments]: Remove unneeded
'generate-configure phase.
| Efraim Flashner |
| 2019-08-09 | gnu: 4store: Don't use unstable tarball....* gnu/packages/databases.scm (4store)[source]: Download using
'git-fetch'.
| Efraim Flashner |
| 2019-08-09 | gnu: Add freebayes....* gnu/packages/bioinformatics.scm (freebayes): New variable.
| Pierre Neidhardt |
| 2019-08-09 | gnu: Add vcflib....* gnu/packages/bioinformatics.scm (vcflib): New variable.
(tabixpp-freebayes): New private variable.
| Pierre Neidhardt |
| 2019-08-08 | gnu: isc-dhcp: Update bundled BIND to 9.11.9....* gnu/packages/patches/isc-dhcp-4.4.1-fixes-for-newer-bind.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (isc-dhcp): Update BIND version to 9.11.9.
[arguments]: In the 'replace-bundled-bind' phase, apply the patch. In the
'post-configure' phase: Refine a substitute* regexp to avoid substituting an
instance of "./configure.log" in the BIND Makefile. Substitute /usr/bin/file
in the BIND configure script.
[native-inputs]: Add 'file', 'patch', and the patch.
[inputs]: Update the hash of bind-source-tarball.
| Mark H Weaver |
| 2019-08-08 | gnu: Add cutter....* gnu/packages/engineering.scm (cutter): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| Jovany Leandro G.C |
| 2019-08-08 | gnu: Add emacs-ox-hugo....gnu/packages/emacs-xyz.scm (emacs-ox-hugo): New variable
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| Dimakakos Dimos via Guix-patches |
| 2019-08-08 | gnu: git-annex: Update to 7.20190708....* gnu/packages/haskell-apps.scm (git-annex): Update to 7.20190708.
[inputs]: Add new dependency, ghc-concurrent-output.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| Kyle Meyer |
| 2019-08-08 | gnu: git-annex: Don't patch shebang used in hooks....git-annex relies on configuring Git's pre-commit and post-receive hooks.
Avoid patching the shebang that git-annex embeds when generating these hooks
so that the hooks don't fail if garbage collection claims the bash that was
current when the annex repository was initialized.
* gnu/packages/haskell-apps.scm (git-annex):[arguments]: Patch hook shebangs
only temporarily for tests.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| Kyle Meyer |
| 2019-08-08 | gnu: emacs-helpful: Update to 0.17....* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.17.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| Brian Leung |
| 2019-08-08 | gnu: ruby-pg: Update to 1.1.4....* gnu/packages/ruby.scm (ruby-pg): Update to 1.1.4.
[inputs]: Change from POSTGRESQL-9.6 to POSTGRESQL.
| Marius Bakke |
| 2019-08-08 | gnu: exempi: Update home page....* gnu/packages/freedesktop.scm (exempi)[home-page]: Update to current.
| Marius Bakke |
| 2019-08-08 | gnu: postgresql@9: Update to 9.6.15 [fixes CVE-2019-10208]....* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.15.
| Marius Bakke |
| 2019-08-08 | gnu: postgresql@11: Update to 11.5 [fixes CVE-2019-10208, CVE-2019-10209]....* gnu/packages/databases.scm (postgresql-11): Update to 11.5.
| Marius Bakke |
| 2019-08-08 | gnu: exempi: Update to 2.5.1....* gnu/packages/freedesktop.scm (exempi): Update to 2.5.1.
| Marius Bakke |
| 2019-08-08 | gnu: LibRaw: Update to 0.19.4....* gnu/packages/photo.scm (libraw): Update to 0.19.4.
| Marius Bakke |
| 2019-08-08 | gnu: r-modelr: Update to 0.1.5....* gnu/packages/cran.scm (r-modelr): Update to 0.1.5.
[propagated-inputs]: Remove r-lazyeval; add r-rlang.
| Ricardo Wurmus |
| 2019-08-08 | gnu: r-quantreg: Update to 5.51....* gnu/packages/statistics.scm (r-quantreg): Update to 5.51.
| Ricardo Wurmus |
| 2019-08-08 | gnu: r-knitr: Update to 1.24....* gnu/packages/statistics.scm (r-knitr): Update to 1.24.
| Ricardo Wurmus |
| 2019-08-08 | gnu: r-markdown: Update to 1.1....* gnu/packages/statistics.scm (r-markdown): Update to 1.1.
[propagated-inputs]: Add r-xfun.
| Ricardo Wurmus |
| 2019-08-08 | gnu: r-ggsignif: Update to 0.6.0....* gnu/packages/cran.scm (r-ggsignif): Update to 0.6.0.
| Ricardo Wurmus |
| 2019-08-08 | gnu: r-hdf5array: Update to 1.12.2....* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.12.2.
| Ricardo Wurmus |
| 2019-08-08 | gnu: r-biocparallel: Update to 1.18.1....* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.18.1.
| Ricardo Wurmus |
| 2019-08-08 | gnu: ToME4: Disable parallel build....* gnu/packages/games.scm (tome4)[arguments]: Add <#:parallel-build?>.
| Marius Bakke |
| 2019-08-08 | Revert "gnu: Add vcflib."...This reverts commit 194e45f90addf5f9bd3e7e2de1dd50b3071f053b.
This commit does not have a good commit message, and it breaks master
| Efraim Flashner |
| 2019-08-08 | Revert "gnu: Add freebayes."...This reverts commit 173e046950e153477a6aaa0f4860d8f080df6843.
| Efraim Flashner |
| 2019-08-08 | gnu: Add freebayes....* gnu/packages/bioinformatics.scm (freebayes): New variable.
| Pierre Neidhardt |
| 2019-08-08 | gnu: Add vcflib....* gnu/packages/bioinformatics.scm (vcflib): New variable.
| Pierre Neidhardt |
| 2019-08-08 | gnu: Add fastahack....* gnu/packages/bioinformatics.scm (fastahack): New variable.
| Pierre Neidhardt |
| 2019-08-08 | gnu: Add fsom....* gnu/packages/bioinformatics.scm (fsom): New variable.
| Pierre Neidhardt |
| 2019-08-08 | gnu: Add multichoose....* gnu/packages/bioinformatics.scm (multichoose): New variable.
| Pierre Neidhardt |
| 2019-08-08 | gnu: Add smithwaterman....* gnu/packages/bioinformatics.scm (smithwaterman): New variable.
| Pierre Neidhardt |
| 2019-08-08 | gnu: Add tabixpp....* gnu/packages/bioinformatics.scm (tabixpp): New variable.
| Pierre Neidhardt |
| 2019-08-08 | gnu: Add network-manager-openconnect....* gnu/packages/gnome.scm (network-manager-openconnect): New variable.
| Efraim Flashner |
| 2019-08-07 | gnu: ghc-trifecta: Disable tests....* gnu/packages/haskell.scm (ghc-trifecta)[arguments]: Disable tests.
| Robert Vollmert |
| 2019-08-07 | gnu: ghc-yaml: Disable tests....* gnu/packages/haskell.scm (ghc-yaml)[arguments]: Disable tests.
| Robert Vollmert |
| 2019-08-07 | gnu: ghc-libmpd-haskell: Disable tests....* gnu/packages/haskell.scm (ghc-libmpd-haskell)[arguments]: Disable
tests.
| Robert Vollmert |
| 2019-08-07 | gnu: Remove ghc-packedstring....The package has no reverse dependencies and is deprecated upstream.
* gnu/packages/haskell.scm (ghc-packedstring): Remove variable.
| Robert Vollmert |
| 2019-08-07 | gnu: Remove ghc-haddock-test....The package doesn't build, has no reverse dependencies, and is
deprecated upstream.
* gnu/packages/haskell.scm (ghc-haddock-test): Remove variable.
| Robert Vollmert |
| 2019-08-07 | gnu: Remove ghc-regex-tdfa-rc....The package doesn't build, has no reverse dependencies, and is deprecated
upstream.
* gnu/packages/haskell.scm (ghc-regex-tdfa-rc): Remove variable.
| Robert Vollmert |
| 2019-08-07 | gnu: Add ghc-snap-server....* gnu/packages/haskell-web.scm (ghc-snap-server): New variable.
| Robert Vollmert |
| 2019-08-07 | gnu: Add ghc-snap-core....* gnu/packages/haskell-web.scm (ghc-snap-core): New variable.
| Robert Vollmert |
| 2019-08-07 | gnu: Add ghc-http-streams....* gnu/packages/haskell-web.scm (ghc-http-streams): New variable.
| Robert Vollmert |
| 2019-08-07 | gnu: Add ghc-http-common....* gnu/packages/haskell-web.scm (ghc-http-common): New variable.
| Robert Vollmert |
| 2019-08-07 | gnu: Add ghc-openssl-streams....* gnu/packages/haskell-crypto.scm (ghc-openssl-streams): New variable.
| Robert Vollmert |
| 2019-08-07 | gnu: Add ghc-hsopenssl....* gnu/packages/haskell-crypto.scm (ghc-hsopenssl): New variable.
| Robert Vollmert |
