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2016-01-15gnu: Add python-wsgi-intercept....* gnu/packages/python.scm (python-wsgi-intercept): New variable. Leo Famulari
2016-01-15gnu: Add python-pytest-localserver....* gnu/packages/python.scm (python-pytest-localserver): New variable. Leo Famulari
2016-01-15gnu: Add python-pytest-cache....* gnu/packages/python.scm (python-pytest-cache): New variable. Leo Famulari
2016-01-15gnu: Add python-execnet....* gnu/packages/python.scm (python-execnet): New variable. Leo Famulari
2016-01-15gnu: Add python-apipkg....* gnu/packages/python.scm (python-apipkg): New variable. Leo Famulari
2016-01-15gnu: Add python-click-log....* gnu/packages/python.scm (python-click-log): New variable. Leo Famulari
2016-01-15gnu: Add python-click-threading....* gnu/packages/python.scm (python-click-threading): New variable. Leo Famulari
2016-01-15gnu: Add python-requests-toolbelt....* gnu/packages/python.scm (python-requests-toolbelt): New variable. Leo Famulari
2016-01-15gnu: Add python-atomicwrites....* gnu/packages/python.scm (python-atomicwrites): New variable. Leo Famulari
2016-01-15gnu: glade: Update to 3.18.5....* gnu/packages/gnome.scm (glade): Update to 3.18.5. [arguments]: Disable tests; add "fix-docbook" phase. [inputs]: Replace "gtk+-2" with "gtk+". [native-inputs]: Add "itstool", "libxslt", "docbook-xml", "docbook-xsl"; replace "python" with "python-2". Ricardo Wurmus
2016-01-15gnu: openssh: Update to 7.1p2....* gnu/packages/ssh.scm (openssh): Update to 7.1p2. Mark H Weaver
2016-01-15Revert "gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778]."...This reverts commit 6d139e53b596ca154800d154b37fcd22741c629c. Mark H Weaver
2016-01-14gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778]....* gnu/packages/ssh.scm (openssh): Update to 7.1p2. Mark H Weaver
2016-01-14gnu: Add docker-compose....* gnu/packages/docker.scm (docker-compose): New variable. David Thompson
2016-01-14gnu: Add python-dockerpty....* gnu/packages/docker.scm (python-dockerpty): New variable. David Thompson
2016-01-14gnu: Add python-docker-py....* gnu/packages/docker.scm: New file. * Makefile.am (GNU_SYSTEM_MODULES): Add it. David Thompson
2016-01-14gnu: Add python-websocket-client....* gnu/packages/python.scm (python-websocket-client): New variable. David Thompson
2016-01-14gnu: Add python-texttable....* gnu/packages/python.scm (python-texttable, python2-texttable): New variables. David Thompson
2016-01-14gnu: Update python-jsonschema to 2.5.1....* gnu/packages/python.scm (python-jsonschema): Update to 2.5.1. [inputs]: Add python-vcversioner. David Thompson
2016-01-14gnu: Add python-vcversioner....* gnu/packages/python.scm (python-vcversioner, python2-vcversioner): New variables. David Thompson
2016-01-14gnu: Add version 2.7 variant of python-requests....* gnu/packages/python.scm (python-requests-2.7): New variable. David Thompson
2016-01-14gnu: r-go-db: Add missing input....* gnu/packages/bioinformatics.scm (r-go-db)[propagated-inputs]: Add "r-annotationdbi". Ricardo Wurmus
2016-01-14gnu: r-sparsem: Add missing "gfortran" input....* gnu/packages/statistics.scm (r-sparsem)[inputs]: Add "gfortran". Ricardo Wurmus
2016-01-14gnu: bowtie: Update to 2.2.6....* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6. [source]: Remove patch; do not set CC and CPP variables. [inputs]: Add "tbb". [arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom "install" phase. * gnu/packages/patches/bowtie-fix-makefile.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove patch file. Ricardo Wurmus
2016-01-14gnu: gnupg: Add TOFU support....* gnu/packages/gnupg.scm (gnupg)[inputs]: Add sqlite. Efraim Flashner
2016-01-14import: gem: Beautify description field....* guix/import/gem.scm (gem->guix-package): Use 'beautify-description'. Ben Woodcroft
2016-01-14import: cran: Move beautify-description to utils module....* guix/import/cran.scm (beautify-description): Move from here... * guix/import/utils.scm: ... to here. Ben Woodcroft
2016-01-14emacs: Fix heading face in "Package Info"....Reported by Ludovic Courtès <ludo@gnu.org> on #guix. This fixes a regression introduced in commit 7171d824. 'insert-text-button' procedure does not allow to override a button face, so a specialized button type should be used instead. * emacs/guix-ui-package.el (guix-package-heading): New button type. (guix-package-info-insert-heading): Use it. Alex Kost
2016-01-14gnu: orfm: Update to 0.5.3....* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3. [native-inputs]: Add inputs required for tests. [description]: Add commas. Ben Woodcroft
2016-01-14gnu: Add ruby-bio-commandeer....* gnu/packages/ruby.scm (ruby-bio-commandeer): New variable. Ben Woodcroft
2016-01-14gnu: Add ruby-systemu....* gnu/packages/ruby.scm (ruby-systemu): New variable. Ben Woodcroft
2016-01-13hydra: Add missing phase and inputs for 'make dist' job....* build-aux/hydra/guix.scm (tarball-package): Inherit from 'guix-devel' rather than 'guix'. Pass #:phases to 'dist-package'. Ludovic Courtès
2016-01-13build-system/gnu: 'dist-package' can be passed the phases....* guix/build-system/gnu.scm (dist-package): Add #:phases parameter and honor it. Ludovic Courtès
2016-01-13monad-repl: Close connection when leaving the monad REPL....* guix/monad-repl.scm (store-monad-language): Add 'store' parameter and use it. Remove call to 'open-connection'. (enter-store-monad): Use 'with-store' and pass the store to 'store-monad-language. Ludovic Courtès
2016-01-13gnu: julia: Update to 0.4.3....* gnu/packages/julia.scm (julia): Update to 0.4.3. (libuv-julia): Update to 07730c4bd595. Ricardo Wurmus
2016-01-13emacs: Move loading packages to "guix-emacs.el"....* emacs/guix-init.el: Move the code for auto-loading Emacs packages to... (guix-package-enable-at-startup): Move to... * emacs/guix-emacs.el (guix-package-enable-at-startup): ... here. Alex Kost
2016-01-13emacs: Make "guix-emacs.el" independent...."guix-emacs.el" may be used just for "instructing" Emacs where to find Emacs packages installed with Guix, so it should have as few dependencies as possible. See <http://lists.gnu.org/archive/html/guix-devel/2016-01/msg00022.html>. * emacs/guix-emacs.el: Require 'guix-profiles' optionally. (guix-emacs-load-autoloads): Use 'guix-profile-prompt' only if it is available. Alex Kost
2016-01-13emacs: Complete --file in 'guix build' popup....* emacs/guix-command.el (guix-command-improve-build-argument): Use 'guix-read-file-name' to complete --file option. Alex Kost
2016-01-13emacs: Add missing shell completions....* emacs/guix-pcomplete.el (guix-pcomplete-complete-option-arg): Complete file name for '--install-from-file' option of 'guix package' command, and for '--file' and '--with-source' options of 'guix build' command. Alex Kost
2016-01-13gnu: isc-dhcp: Update to 4.3.3-P1 [fixes CVE-2015-8605]....* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3-P1. Mark H Weaver
2016-01-13gnu: samtools: Update to 1.3....* gnu/packages/bioinformatics.scm (samtools): Update to 1.3. [arguments]: Enable tests for all architectures; set ncurses in configure-flags instead of make-flags; simplify "patch-tests" phase; restore "configure" phase. Ricardo Wurmus
2016-01-13build: Use 127 as the Linux hash-bang limit....Reported by taylanbayirli@gmail.com (Taylan Ulrich Bayırlı/Kammer). * m4/guix.m4 (LINUX_HASH_BANG_LIMIT): Set to 127. Ludovic Courtès
2016-01-13gnu: skribilo: Update to 0.9.3....* gnu/packages/skribilo.scm (skribilo): Update to 0.9.3. [native-inputs]: New field. Ludovic Courtès
2016-01-12doc: Fix typo in "Build Systems"....* doc/guix.texi (Build Systems): Remove extra 's'. Leo Famulari
2016-01-12gnu: boost: Update to 1.60.0....* gnu/packages/boost.scm (boost): Update to 1.60.0. [source]: Remove patch. * gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch * gnu-system.am (dist_patch_DATA): Remove patch. Also fix dependent packages: * gnu/packages/patches/csound-header-ordering.patch: New patch. * gnu/packages/audio.scm (csound)[source]: Use it. [arguments]: Add 'set-flags phase. * gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch. * gnu/packages/libreoffice.scm (libcmis)[source]: Use it. (libreoffice)[arguments]: Add LDFLAGS to #:configure-flags. (librevenge)[inputs]: Move boost from here... [propogated-inputs]: to here. [arguments]: Add LDFLAGS to #:configure-flags. * gnu/packages/patches/openimageio-boost-1.60.patch: New patch. * gnu/packages/graphics.scm (openimageio): Use it. * gnu-system.am (dist_patch_DATA): Add patches. Eric Bavier
2016-01-12gnu: boost: Use modify-phases....* gnu/packages/boost.scm (boost)[arguments]: Use modify-phases. Eric Bavier
2016-01-12build: 'make check' errors out if file name limits would be hit....* Makefile.am (SCM_TESTS, SH_TESTS, TESTS, AM_TESTS_ENVIRONMENT) (SCM_LOG_COMPILER, SH_LOG_COMPILER, AM_SCM_LOG_FLAGS) (AM_SH_LOG_FLAGS): Move within 'if CAN_RUN_TESTS'. (check-local) [!CAN_RUN_TESTS]: New target. * daemon.am (AM_TESTS_ENVIRONMENT, TESTS): Ditto. * m4/guix.m4 (GUIX_CHECK_FILE_NAME_LIMITS): Add parameter and set it. Ludovic Courtès
2016-01-12build: Warn against long hash bang lines for tests....* m4/guix.m4 (GUIX_TEST_HASH_BANG_LENGTH): New macro. (GUIX_CHECK_FILE_NAME_LIMITS): Use it. Warn against long hash bang lines in tests. Ludovic Courtès
2016-01-12doc: Show bootstrapping at the package level....* doc/images/bootstrap-packages.dot: New file. * doc.am (DOT_FILES): Add it. * doc/guix.texi (Bootstrapping): Show 'guix graph' commands. Includes 'images/bootstrap-packages' and comment it. Ludovic Courtès
2016-01-12gnu: sudo: Add fix for CVE-2015-5602....* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/admin.scm (sudo)[source]: Add patch. Mark H Weaver
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