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2021-03-15gnu: rust-proc-macro2-1: Adapt for new build system.Efraim Flashner
* gnu/packages/crates-io.scm (rust-proc-macro2-1)[inputs]: Add rust-unicode-xid-0.2.
2021-03-15gnu: rust-winapi-0.3: Adjust for new build system.Efraim Flashner
* gnu/packages/crates-io.scm (rust-winapi-0.3)[inputs]: Add rust-winapi-i686-pc-windows-gnu, rust-winapi-x86-64-pc-windows-gnu.
2021-03-15gnu: rust-pkg-config-0.3: Hardcode location of pkg-config.Efraim Flashner
* gnu/packages/crates-io.scm (rust-pkg-config-0.3)[arguments]: Add phase to hardcode location of pkg-config binary.
2021-03-15gnu: rust-pkg-config-0.3: Update to 0.3.19.Efraim Flashner
* gnu/packages/crates-io.scm (rust-pkg-config-0.3): Update to 0.3.19.
2021-03-15gnu: rust-wayland-sys-0.28: Adapt for new build system.Efraim Flashner
* gnu/packages/crates-graphics.scm (rust-wayland-sys-0.28)[arguments]: Don't skip build. Add phase to refer explicitly to wayland libraries. [inputs]: Add rust-dlib-0.4, rust-lazy-static-1, rust-libc-0.2, rust-pkg-config-0.3. [propagated-inputs]: Add wayland. (rust-wayland-sys-0.23): Adjust accordingly.
2021-03-15gnu: rust-quote-1: Update to 1.0.9.Efraim Flashner
* gnu/packages/crates-io.scm (rust-quote-1): Update to 1.0.9.
2021-03-15build-system/cargo: Don't clobber packaged crates while building.Efraim Flashner
This fixes an issue where two packages share a common dependent. * guix/build/cargo-build-system.scm (unpack-rust-crates): Only copy rust crates into the target directory if there isn't one already there with the same name.
2021-03-15gnu: r-variantannotation: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-variantannotation): Move from here... * gnu/packages/bioconductor.scm (r-variantannotation): ...to here.
2021-03-15gnu: r-edger: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-edger): Move from here... * gnu/packages/bioconductor.scm (r-edger): ...to here.
2021-03-15gnu: r-genomeinfodb: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Move from here... * gnu/packages/bioconductor.scm (r-genomeinfodb): ...to here.
2021-03-15gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Move from here... * gnu/packages/bioconductor.scm (r-genomeinfodbdata): ...to here. [source]: Use 'bioconductor-uri'.
2021-03-15gnu: r-iranges: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-iranges): Move from here... * gnu/packages/bioconductor.scm (r-iranges): ...to here.
2021-03-15gnu: r-s4vectors: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-s4vectors): Move from here... * gnu/packages/bioconductor.scm (r-s4vectors): ...to here.
2021-03-15gnu: r-bioccheck: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-bioccheck): Move from here... * gnu/packages/bioconductor.scm (r-bioccheck): ...to here.
2021-03-15gnu: r-grohmm: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-grohmm): Move from here... * gnu/packages/bioconductor.scm (r-grohmm): ...to here.
2021-03-15gnu: r-biocstyle: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-biocstyle): Move from here... * gnu/packages/bioconductor.scm (r-biocstyle): ...to here.
2021-03-15gnu: r-biocviews: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-biocviews): Move from here... * gnu/packages/bioconductor.scm (r-biocviews): ...to here.
2021-03-15gnu: r-rsqlite: Update to 2.2.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.4.
2021-03-15gnu: r-rcpparmadillo: Update to 0.10.2.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.2.2.0.
2021-03-15gnu: r-formatr: Update to 1.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-formatr): Update to 1.8. [native-inputs]: Add r-knitr.
2021-03-15gnu: r-survival: Update to 3.2-9.Ricardo Wurmus
* gnu/packages/statistics.scm (r-survival): Update to 3.2-9.
2021-03-15gnu: r-textshaping: Update to 0.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.2.
2021-03-15gnu: r-mlr3tuning: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.8.0.
2021-03-15gnu: r-bbotk: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-bbotk): Update to 0.3.1.
2021-03-15gnu: r-workflows: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-workflows): Update to 0.2.2. [propagated-inputs]: Add r-vctrs.
2021-03-15gnu: r-spatstat: Update to 2.0-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat): Update to 2.0-1. [propagated-inputs]: Remove r-abind, r-deldir, r-goftest, r-matrix, r-mgcv, r-nlme, r-polyclip, r-rpart, and r-tensor; add r-spatstat-core, r-spatstat-geom, and r-spatstat-linnet.
2021-03-15gnu: r-brms: Update to 2.15.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-brms): Update to 2.15.0.
2021-03-15gnu: r-forecast: Update to 8.14.Ricardo Wurmus
* gnu/packages/cran.scm (r-forecast): Update to 8.14.
2021-03-15gnu: r-lavaan: Update to 0.6-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-8.
2021-03-15gnu: r-parallelly: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-parallelly): Update to 1.24.0.
2021-03-15gnu: r-effectsize: Update to 0.4.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-effectsize): Update to 0.4.4.
2021-03-15gnu: r-magick: Update to 2.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-magick): Update to 2.7.0.
2021-03-15gnu: r-blockfest: Update to 2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-blockfest): Update to 2.0.
2021-03-15gnu: r-flextable: Update to 0.6.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-flextable): Update to 0.6.4.
2021-03-15gnu: r-maptools: Update to 1.1-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-maptools): Update to 1.1-1.
2021-03-15gnu: r-utf8: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-utf8): Update to 1.2.1. [native-inputs]: Add r-knitr.
2021-03-15gnu: r-xfun: Update to 0.22.Ricardo Wurmus
* gnu/packages/cran.scm (r-xfun): Update to 0.22.
2021-03-15gnu: r-ipred: Update to 0.9-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-ipred): Update to 0.9-11.
2021-03-15gnu: r-lava: Update to 1.6.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-lava): Update to 1.6.9.
2021-03-15gnu: r-rvest: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rvest): Update to 1.0.0. [propagated-inputs]: Add r-lifecycle, r-rlang, and r-tibble.
2021-03-15gnu: r-zoo: Update to 1.8-9.Ricardo Wurmus
* gnu/packages/cran.scm (r-zoo): Update to 1.8-9.
2021-03-15gnu: Add r-spatstat-linnet.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-linnet): New variable.
2021-03-15gnu: Add r-spatstat-core.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-core): New variable.
2021-03-15gnu: Add r-spatstat-geom.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-geom): New variable.
2021-03-15gnu: Add r-spatstat-sparse.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-sparse): New variable.
2021-03-15gnu: python-sphobjinv: Fix build.Léo Le Bouter
* gnu/packages/sphinx.scm (python-sphobjinv): [patches]: Remove. [propagated-inputs]: Add (uncomment) python-certifi.
2021-03-15gnu: libcroco/fixed: Make private.Léo Le Bouter
* gnu/packages/gnome.scm (libcroco/fixed): Use define instead of define-public.
2021-03-15gnu: cyrus-sasl/fixed: Make private.Léo Le Bouter
* gnu/packages/cyrus-sasl.scm (cyrus-sasl/fixed): Use define instead of define-public.
2021-03-15gnu: unzip/fixed: Make private.Léo Le Bouter
* gnu/packages/compression.scm (unzip/fixed): Use define instead of define-public.
2021-03-15gnu: poetry: Update to 1.1.5.Tanguy Le Carrour
* gnu/packages/python-xyz.scm (poetry): Update to 1.1.5. Signed-off-by: Christopher Baines <mail@cbaines.net>
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