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2016-03-02tests: Disable grafts by default....Fixes <http://bugs.gnu.org/22872>. Reported by myglc2 <myglc2@gmail.com>. * test-env.in: Define and export 'GUIX_BUILD_OPTIONS'. * tests/guix-build.sh: When setting 'GUIX_BUILD_OPTIONS', make sure it contains '--no-grafts'. * tests/guix-package.sh: Likewise. * tests/guix-daemon.sh: Add (%graft? #f) in Scheme snippets. Ludovic Courtès
2016-03-02graph: Ignore 'GUIX_BUILD_OPTIONS'....Previously 'GUIX_BUILD_OPTIONS' would be honored, but 'guix graph' does not support the common build options. * guix/scripts/graph.scm (guix-graph): Use 'args-fold*' instead of 'parse-command-line'. Ludovic Courtès
2016-03-02guix build: Move '--no-grafts' to the common build options....* guix/scripts/build.scm (%options): Move --no-grafts to... (%standard-build-options): ... here. (show-help, show-build-options-help): Adjust accordingly. * guix/scripts/archive.scm (%default-options): Add 'graft?'. (guix-archive): Parametrize '%graft?'. * guix/scripts/environment.scm (%default-options): Add 'graft?'. (guix-environment): Parametrize '%graft?'. * guix/scripts/package.scm (%default-options): Add 'graft?'. (guix-package): Parametrize '%graft?'. * guix/scripts/system.scm (%default-options): Add 'graft?'. (guix-system): Parametrize 'graft?'. * doc/guix.texi (Additional Build Options): Move --no-grafts to... (Common Build Options): ... here. Ludovic Courtès
2016-03-02guix archive: Use 'with-store'....* guix/scripts/archive.scm (guix-archive): Use 'with-store' instead of an explicit 'open-connection'. Ludovic Courtès
2016-03-02gnu: openssl: Enable ssl2 at build time to ensure ABI compatible graft....Fixes <https://debbugs.gnu.org/22876> Reported by Christopher Allan Webber <cwebber@dustycloud.org>. * gnu/packages/tls.scm (openssl-1.0.2g)[arguments]: Override the inherited 'configure' phase to add "enable-ssl2" as an argument to ./config. Mark H Weaver
2016-03-01gnu: ilmbase: Fix typo in adding a patch....* gnu-system.am (dist_patch_DATA): Fix typo. 5e8276dcf4e3a05f69176dca816f00616e7f0593 Leo Famulari
2016-03-02gnu: xfce: Don't wrap 'startxfce4'....The necessary environment variables are set by 'etc/profile' now. * gnu/packages/xfce.scm (xfce)[build-system]: Use 'trivial-build-system'. [arguments]: Simplify. 宋文武
2016-03-01gnu: ilmbase: Add patch to fix build on i686....Fixes <http://bugs.gnu.org/22049>. * gnu/packages/patches/ilmbase-fix-tests.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/graphics.scm (ilmbase)[source]: Add patch. Leo Famulari
2016-03-01gnu: openssh: Update to 7.2p1....* gnu/packages/ssh.scm (openssh): Update to 7.2p1. Leo Famulari
2016-03-01gnu: libressl: Update to 2.2.6....* gnu/packages/tls.scm (libressl): Update to 2.2.6. Leo Famulari
2016-03-01gnu: parallel: Update to 20160222....* gnu/packages/parallel.scm (parallel): Update to 20160222. Leo Famulari
2016-03-01gnu: r-go-db: Bioconductor changed URL for data downloads....* gnu/packages/bioinformatics.scm (r-go-db)[source]: Update data URL. Pjotr Prins
2016-03-01gnu: r-iranges: Update to 2.4.8....* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.4.8. Pjotr Prins
2016-03-01gnu: r-s4vectors: Update to 0.8.11....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.8.11. Pjotr Prins
2016-03-01gnu: r-ggplot2: Update to 2.0.0....* gnu/packages/statistics.scm (r-ggplot2): Update to 2.0.0. Pjotr Prins
2016-03-01gnu: openssl: Replace with 1.0.2g [fixes CVE-2016-{0800,0705,0798,0797,0799,0......See <http://openssl.org/news/secadv/20160301.txt>. Also fixes <http://bugs.gnu.org/22831>. * gnu/packages/patches/openssl-c-rehash-in.patch: New file. * gnu/packages/tls.scm (openssl)[replacement]: New field. (openssl-1.0.2g): New variable. Ludovic Courtès
2016-03-01grafts: Graft recursively....Fixes <http://bugs.gnu.org/22139>. * guix/grafts.scm (graft-derivation): Rename to... (graft-derivation/shallow): ... this. (graft-origin-file-name, item->deriver, non-self-references) (cumulative-grafts, graft-derivation): New procedures * tests/grafts.scm ("graft-derivation, grafted item is a direct dependency"): Clarify title. Use 'grafted' instead of 'graft' to refer to the grafted derivation. ("graft-derivation, grafted item is an indirect dependency") ("graft-derivation, no dependencies on grafted output"): New tests. * guix/packages.scm (input-graft): Change to take a package instead of an input. (input-cross-graft): Likewise. (fold-bag-dependencies): New procedure. (bag-grafts): Rewrite in terms of 'fold-bag-dependencies'. * tests/packages.scm ("package-derivation, indirect grafts"): Comment out. * doc/guix.texi (Security Updates): Mention run-time dependencies and recursive grafting. Ludovic Courtès
2016-03-01gnu: tiled: Use 'modify-phases'....* gnu/packages/game-development.scm (tiled)[arguments]: Use 'modify-phases'. Efraim Flashner
2016-03-01gnu: tiled: Update to 0.15.1....* gnu/packages/game-development.scm (tiled): Update to 0.15.1. Efraim Flashner
2016-03-01gnu: Add PePr....* gnu/packages/bioinformatics.scm (pepr): New variable. Ricardo Wurmus
2016-03-01gnu: Add bwa-pssm....* gnu/packages/bioinformatics.scm (bwa-pssm): New variable. Ricardo Wurmus
2016-03-01gnu: Add gdsl....* gnu/packages/datastructures.scm (gdsl): New variable. Ricardo Wurmus
2016-03-01gnu: weechat: Move to irc.scm....* gnu/packages/weechat.scm (weechat): Move from here ... * gnu/packages/irc.scm (weechat): ... to here. * gnu/packages/weechat.scm: Delete file. * gnu-system.am (GNU_SYSTEM_MODULES): Remove weechat.scm. Efraim Flashner
2016-03-01gnu: irssi: Use 'modify-phases'....* gnu/packages/irc.scm (irssi)[arguments]: Use 'modify-phases'. Efraim Flashner
2016-03-01gnu: irssi: Move to irc.scm....* gnu/packages/irssi.scm (irssi): Move from here ... * gnu/packages/irc.scm (irssi): ... to here. * gnu/packages/irssi.scm: Delete file. * gnu-system.am (GNU_SYSTEM_MODULES): Remove irssi.scm. Efraim Flashner
2016-03-01gnu: Add quassel....* gnu/packages/irc.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Register it. Efraim Flashner
2016-03-01gnu: Add snorenotify....* gnu/packages/kde.scm (snorenotify): New variable. Efraim Flashner
2016-03-01gnu: Add qca....* gnu/packages/kde.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Register it. Efraim Flashner
2016-03-01gnu: Add oxygen-icons....* gnu/packages/kde-frameworks.scm (oxygen-icons): New variable. Efraim Flashner
2016-02-29gnu: Add desmume....* gnu/packages/games.scm (desmume): New variable. Manolis Ragkousis
2016-02-29gnu: curl: Use updated libssh2 [fixes CVE-2016-7087]....* gnu/packages/curl.scm (curl)[inputs]: Use libssh2. * gnu/packages/ssh.scm (libssh2-1.4): Remove variable. Mark H Weaver
2016-02-29gnu: Remove python2-pil....python2-pil is vulnerable to several security issues (CVE-2016-0740, CVE-2016-0775, and CVE-2016-2533). Fortunately, python2-pillow provides equivalent functionality, so this package can be cleanly removed. * gnu/packages/python.scm (python2-pil): Remove variable. Christopher Allan Webber
2016-02-29gnu: guile-for-guile-emacs: Use guile-2.0 search paths....* gnu/packages/guile.scm (guile-for-guile-emacs)[native-search-paths]: Use the same search paths as guile-2.0. Ricardo Wurmus
2016-02-28gnu: msmtp: Install msmtpq....* gnu/packages/mail.scm (msmtp)[arguments]: Install msmtpq scripts. Leo Famulari
2016-02-28gnu: git: Install symlinks instead of hard links....This reduces nar size by a factor of 10. Fixes <http://bugs.gnu.org/21949>. * gnu/packages/version-control.scm (git)[arguments]: Pass NO_INSTALL_HARDLINKS as #:make-flags. Ludovic Courtès
2016-02-28gnu: libwnck: Rename variable for GTK+ 2 variant....* gnu/packages/gnome.scm (libwnck-1): Rename this... (libwnck-2): ...to this. * gnu/packages/xfce.scm (xfce4-panel, xfce4-xkb-plugin, xfce4-session, xfwm4, xfdesktop)[inputs]: Adapt. Andreas Enge
2016-02-28gnu: xrandr: Update to 1.5.0....* gnu/packages/xorg.scm (xrandr): Update to 1.5.0. Efraim Flashner
2016-02-28gnu: libqmi: Update to 1.12.8....* gnu/packages/freedesktop.scm (libqmi): Update to 1.12.8. Efraim Flashner
2016-02-28gnu: wayland: Update to 1.10.0....* gnu/packages/freedesktop.scm (wayland): Update to 1.10.0. [arguments]: Disable parallel tests. Efraim Flashner
2016-02-28gnu: libinput: Update to 1.2.0....* gnu/packages/freedesktop.scm (libinput): Update to 1.2.0. Efraim Flashner
2016-02-28gnu: python-tornado: Update to 4.3....* gnu/packages/python.scm (python-tornado): Update to 4.3. [native-inputs]: Add python-backports-abc. (python2-tornado)[inputs]: Add python2-singledispatch. Efraim Flashner
2016-02-28gnu: Add python-backports-abc....* gnu/packages/python.scm (python-backports-abc): New variable. Efraim Flashner
2016-02-27gnu: bitlbee: Update to 3.4.1....* gnu/packages/patches/bitlbee-configure-doc-fix.patch: Delete file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/messaging.scm (bitlbee): Update to 3.4.1. [source]: Remove patch. Mark H Weaver
2016-02-27grafts: Consider all the outputs in the graft mapping....Before that, outputs of a derivation could be left referring to the ungrafted version of the derivation. * guix/grafts.scm (graft-derivation)[outputs]: Change to a list of name/file pairs. * guix/grafts.scm (graft-derivation)[build]: Add 'old-outputs' variable and use it when computing 'mapping'. Use 'mapping' directly. * tests/grafts.scm ("graft-derivation, multiple outputs"): New test. Ludovic Courtès
2016-02-27grafts: Slight simplification....* guix/grafts.scm (graft-derivation)[output-names]: Use 'derivation-output-names'. Ludovic Courtès
2016-02-27grafts: Make sure files are not created world-writable....* guix/build/graft.scm (rewrite-directory): Add 'umask' call. Ludovic Courtès
2016-02-27gnu: btrfs-progs: Update to 4.4.1....* gnu/packages/linux.scm (btrfs-progs): Update to 4.4.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Tobias Geerinckx-Rice
2016-02-27gnu: scribus: Update to 1.5.1....* gnu/packages/scribus.scm (scribus): Update to 1.5.1. [source]: Remove patch. * gnu/packages/patches/scribus-qobject.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. Ricardo Wurmus
2016-02-27gnu: arandr: Add "xrandr" to inputs....* gnu/packages/xdisorg.scm (arandr)[inputs]: Add "xrandr". [arguments]: Add build phase "make-xrandr-available" to ensure "xrandr" executable is found at runtime. Ricardo Wurmus
2016-02-27gnu: Fix misplaced commas (unquote)....Fix many occurrences of comma (unquote) being placed immediately after the previous list item, e.g. ("ncurses", ncurses) in the inputs. * gnu/packages/base.scm (patch, gnu-make), gnu/packages/bioinformatics.scm (hmmer), gnu/packages/bittorrent.scm (aria2), gnu/packages/compression.scm (pbzip2), gnu/packages/databases.scm (recutils), gnu/packages/fonts.scm (font-terminus), gnu/packages/freedesktop.scm (xdg-utils, elogind), gnu/packages/games.scm (gnujump), gnu/packages/gnome.scm (libidl, gnumeric, eog, gedit), gnu/packages/gnunet.scm (gnunet), gnu/packages/gnuzilla.scm (mozjs, nspr), gnu/packages/gtk.scm (gtksourceview, gdk-pixbuf), gnu/packages/lua.scm (lua), gnu/packages/openstack.scm (python-swiftclient), gnu/packages/perl.scm (perl-json-any), gnu/packages/polkit.scm (polkit-qt), gnu/packages/python.scm (wrap-python3, python-oauthlib) (python-mccabe-0.2.1, python-contextlib2, python2-rauth), gnu/packages/qt.scm (qtkeychain), gnu/packages/ruby.scm (ruby-nokogiri), gnu/packages/screen.scm (screen), gnu/packages/ssh.scm (libssh), gnu/packages/video.scm (ffmpeg, mplayer), gnu/packages/vim.scm (vim), gnu/packages/xdisorg.scm (redshift), gnu/packages/xfce.scm (xfce4-panel, xfce4-settings), gnu/packages/xnee.scm (xnee), gnu/packages/xorg.scm (font-adobe100dpi, font-adobe75dpi), gnu/packages/zsh.scm (zsh): Fix misplaced commas (unquote). Mark H Weaver
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