| Age | Commit message (Expand) | Author |
|---|
| 2017-03-17 | build/cargo-build-system: Make cargo-build-system install working packages....* guix/build/cargo-build-system.scm (configure): Remove proprietary
dependencies. Add rust dependencies and configure Cargo to find them.
(build): Also build libraries, not just applications.
(file-sha256): New variable.
(generate-checksums): New variable. Export it.
(touch): New variable.
(install): Generate checksums so Cargo accepts the package.
| Danny Milosavljevic |
| 2017-03-17 | build-system/cargo (cargo-build): Add cargo-build-flags, remove configure-flags....* guix/build-system/cargo.scm (cargo-build): Add cargo-build-flags,
remove configure-flags.
| Danny Milosavljevic |
| 2017-03-17 | gnu: cargo: Use upstream cargo....* gnu/packages/rust.scm (cargo): Use upstream cargo.
| Danny Milosavljevic |
| 2017-03-17 | gnu: rust: Update to 1.15.0....* gnu/packages/rust.scm (%rust-bootstrap-binaries-version): Update to 1.14.0.
(%rust-bootstrap-binaries): Update to 1.14.0.
(rustc): Update to 1.15.0.
[arguments]: Pass "--disable-rustbuild" to configure.
| Danny Milosavljevic |
| 2017-03-17 | gnu: libpng-apng: Remove unnecessary call to libtool....* gnu/packages/image.scm (libpng-apng)[phases]: Remove it.
| Kei Kebreau |
| 2017-03-17 | gnu: Add libpng-apng....* gnu/packages/image.scm (libpng-apng): New variable.
Co-authored-by: Kei Kebreau <kei@openmailbox.org>
| ng0 |
| 2017-03-17 | gnu: Add ocaml-mcl....* gnu/packages/machine-learning.scm (ocaml-mcl): New variable.
| Ben Woodcroft |
| 2017-03-17 | gnu: Add ocaml-gsl....* gnu/packages/maths.scm (ocaml-gsl): New variable.
| Ben Woodcroft |
| 2017-03-17 | gnu: Add ocaml-csv....* gnu/packages/ocaml.scm (ocaml-csv): New variable.
| Ben Woodcroft |
| 2017-03-17 | gnu: Add ocaml-sqlite3....* gnu/packages/ocaml.scm (ocaml-sqlite3): New variable.
| Ben Woodcroft |
| 2017-03-17 | gnu: snakemake: Update to 3.11.2....* gnu/packages/python.scm (snakemake): Update to 3.11.2.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-minimal: Fix remaining reproducibility problems....Fixes <https://bugs.gnu.org/25598>.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r: Rename to r-minimal....* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-with-recommended-packages....* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r: Do not build recommended packages....* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-survival: Move to set of recommended R packages....* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-spatial....* gnu/packages/statistics.scm (r-spatial): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-rpart: Move to the set of recommended packages....* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-nnet: Move to set of recommended R packages....* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-mgcv: Move to set of recommended R packages....* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-nlme....* gnu/packages/statistics.scm (r-nlme): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-matrix: Move to set of recommended R packages....* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-lattice: Move to other recommended R packages....* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-kernsmooth....* gnu/packages/statistics.scm (r-kernsmooth): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-foreign....* gnu/packages/statistics.scm (r-foreign): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-codetools....* gnu/packages/statistics.scm (r-codetools): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-cluster....* gnu/packages/statistics.scm (r-cluster): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-class....* gnu/packages/statistics.scm (r-class): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-mass....* gnu/packages/statistics.scm (r-mass): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-boot....* gnu/packages/statistics.scm (r-boot): New variable.
| Ricardo Wurmus |
| 2017-03-17 | doc: Really document 'guix pack --format'....* doc/guix.texi (Invoking guix pack): Properly document --format.
| Ludovic Courtès |
| 2017-03-17 | gnu: youtube-dl: Update to 2017.03.16....* gnu/packages/video.scm (youtube-dl): Update to 2017.03.16.
| Tobias Geerinckx-Rice |
| 2017-03-16 | gnu: asciidoc: Use local docbook-xml package....* gnu/packages/documentation.scm (asciidoc)[inputs]: Add docbook-xml.
[arguments]: Add 'make-local-docbook-xml' phase.
| Kei Kebreau |
| 2017-03-17 | gnu: Add knot....* gnu/packages/dns.scm (knot): New variable.
| Tobias Geerinckx-Rice |
| 2017-03-17 | gnu: Add liburcu....* gnu/packages/datastructures.scm (liburcu): New variable.
| Tobias Geerinckx-Rice |
| 2017-03-17 | gnu: dns: Fix typo and use @dfn in descriptions....* gnu/packages/dns.scm (bind)[description]: Use @dfn to expand acronyms.
(yadifa)[description]: Likewise, and fix a typo.
| Tobias Geerinckx-Rice |
| 2017-03-16 | gnu: linux-libre: Update to 4.10.3....* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.3.
(%linux-libre-hash): Update hash.
| Leo Famulari |
| 2017-03-16 | gnu: linux-libre@4.4: Update to 4.4.54....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.54.
| Leo Famulari |
| 2017-03-16 | gnu: linux-libre@4.9: Update to 4.9.15....* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.15.
| Leo Famulari |
| 2017-03-16 | gnu: qemu: Fix CVE-2017-{2620,2630}....* gnu/packages/patches/qemu-CVE-2017-2620.patch,
gnu/packages/patches/qemu-CVE-2017-2630.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/qemu.scm (qemu)[source]: Use them.
| Leo Famulari |
| 2017-03-16 | gnu: virglrenderer: Fix CVE-2017-6386....* gnu/packages/patches/virglrenderer-CVE-2017-6386.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/spice.scm (virglrenderer)[source]: Use it.
| Leo Famulari |
| 2017-03-16 | doc: Reorganize categories....* doc/guix.texi: Move "guix build" to the "Software Development"
category; add "guix pack".
| Ludovic Courtès |
| 2017-03-16 | doc: Mention 'guix pack' reproducibility....* doc/guix.texi (Invoking guix pack): Mention reproducibility.
| Ludovic Courtès |
| 2017-03-16 | pack: Allow for "-S /opt/foo="....Reported by Andy Wingo.
* guix/scripts/pack.scm (%options): Use 'string-split' instead of
'string-tokenize'.
| Ludovic Courtès |
| 2017-03-16 | pack: Honor symlinks in the Docker back-end....* guix/docker.scm (symlink-source, topmost-component): New procedures.
(build-docker-image): Add #:symlinks parameter and honor it. Remove
hard-coded /bin symlink.
* guix/scripts/pack.scm (docker-image): Pass #:symlinks to
'build-docker-image'.
| Ludovic Courtès |
| 2017-03-16 | docker: Build images in a reproducible fashion....* guix/docker.scm (%tar-determinism-options): New variable.
(build-docker-image): Use it on the two 'tar' invocations.
| Ludovic Courtès |
| 2017-03-16 | pack: Use a fixed timestamp in Docker images....* guix/docker.scm (build-docker-image): Add #:creation-time parameter.
Use SRFI-19 'date->string' instead of 'strftime' et al.
* guix/scripts/pack.scm (docker-image)[build]: Pass #:creation-time to
'build-docker-image'.
| Ludovic Courtès |
| 2017-03-16 | pack: Add '--format' option and Docker output support....* guix/docker.scm: Remove dependency on (guix store) and (guix utils).
Use (guix build store-copy). Load (json) lazily.
(build-docker-image): Remove #:system. Add #:closure, #:compressor, and
'image' parameters. Use 'uname' to determine the architecture. Remove
use of 'call-with-temporary-directory'. Use 'read-reference-graph' to
compute ITEMS. Honor #:compressor.
* guix/scripts/pack.scm (docker-image): New procedure.
(%default-options): Add 'format'.
(%formats): New variable.
(%options, show-help): Add '--format'.
(guix-pack): Honor '--format'.
* guix/scripts/archive.scm: Remove '--format' option. This reverts
commits 1545a012cb7cd78e25ed99ecee26df457be590e9,
01445711db6771cea6122859c3f717f130359f55, and
03476a23ff2d4175b7d3c808726178f764359bec.
* doc/guix.texi (Invoking guix pack): Document '--format'.
(Invoking guix archive): Remove documentation of '--format'.
| Ludovic Courtès |
| 2017-03-16 | pack: Honor command-line options related to the store....* guix/scripts/pack.scm (guix-pack): Call
'set-build-options-from-command-line'.
| Ludovic Courtès |
| 2017-03-16 | memoization: Micro-optimize code produced by 'define-cache-procedure'....* guix/memoization.scm (%nothing): Remove.
(define-cache-procedure): Make '%nothing' a local variable, with a
literal list.
| Ludovic Courtès |
