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2018-03-19build-system/meson: Use 'target-arm32?' for armhf-linux case....* guix/build-system/meson.scm (lower, meson-build): Replace armhf-linux detection with 'target-arm32?' macro. Efraim Flashner
2018-03-19gnu: pigx-bsseq: Update to 0.0.7....* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7. [inputs]: Add coreutils, sed, and grep. Ricardo Wurmus
2018-03-19gnu: bismark: Fix references to gunzip....* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to gunzip executable. [inputs]: Add gzip. Ricardo Wurmus
2018-03-19gnu: pigx-scrnaseq: Update to 0.0.3....* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.3. [inputs]: Add coreutils and perl. Ricardo Wurmus
2018-03-19patchelf: Use 'https' for source uri....* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri. Efraim Flashner
2018-03-19patchelf: Use 'https' for source uri....* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri. Efraim Flashner
2018-03-19gnu: patchelf: Update argument phase....* gnu/packages/elf.scm (patchelf)[arguments]: Use 'modify-phases' syntax. Replace 'system*' with 'invoke'. Efraim Flashner
2018-03-19gnu: patchelf: Use 'target-arm32?' for armhf-linux case....* gnu/packages/elf.scm (patchelf)[inputs]: Replace armhf-linux detection logic with 'target-arm32?' macro. [arguments]: Same. Efraim Flashner
2018-03-19gnu: python-paramiko: Update to 2.1.5....* gnu/packages/python-crypto.scm (python-paramiko, python2-paramiko): Update to 2.1.5. Leo Famulari
2018-03-19gnu: perl-net-ssleay: Update to 1.85....* gnu/packages/tls.scm (perl-net-ssleay): Update to 1.85. Tobias Geerinckx-Rice
2018-03-19gnu: perl-http-message: Update to 6.15....* gnu/packages/web.scm (perl-http-message): Update to 6.15. [source]: Update URI. [native-inputs]: Add perl-try-tiny. Tobias Geerinckx-Rice
2018-03-19gnu: r-minimal, r: Update to 3.4.4....There seem to be no dependency updates as far as I could find. * gnu/packages/statistics.scm (r-minimal): Update to 3.4.4. Tobias Geerinckx-Rice
2018-03-19gnu: python-pynacl: Update to 1.2.0....* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.2.0. [native-inputs]: Add python-hypothesis. Leo Famulari
2018-03-19gnu: pigx: Update to 0.0.2....* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.2. Ricardo Wurmus
2018-03-19gnu: r-rcas: Use ghc-pandoc-citeproc-with-pandoc-1....* gnu/packages/bioinformatics.scm (r-rcas)[inputs]: Replace ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: bash-completion: Update to 2.8....* gnu/packages/bash.scm (bash-completion): Update to 2.8. * gnu/packages/patches/bash-completion-directories.patch: Update context. Tobias Geerinckx-Rice
2018-03-19gnu: hdparm: Update to 9.55....* gnu/packages/linux.scm (hdparm): Update to 9.55. Tobias Geerinckx-Rice
2018-03-19gnu: libtirpc: Update to 1.0.3....* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.3. [source]: Remove patch. * gnu/packages/patches/libtirpc-missing-headers.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-03-19gnu: libtirpc: Always return #t from phases....* gnu/packages/onc-rpc.scm (libtirpc)[arguments]: End phase with #t. Tobias Geerinckx-Rice
2018-03-19gnu: perl-file-basedir: Update to 0.08....* gnu/packages/freedesktop.scm (perl-file-basedir): Update to 0.08. Tobias Geerinckx-Rice
2018-03-19gnu: enlightenment: Update to 0.22.2....* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.2. Tobias Geerinckx-Rice
2018-03-19gnu: python-oslo.utils: Update to 3.36.0....* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.36.0. Tobias Geerinckx-Rice
2018-03-19gnu: python-oslo.i18n: Update to 3.20.0....* gnu/packages/openstack.scm (python-oslo.i18n): Update to 3.20.0. Tobias Geerinckx-Rice
2018-03-19gnu: r-withr: Update to 2.1.2....* gnu/packages/statistics.scm (r-withr): Update to 2.1.2. Tobias Geerinckx-Rice
2018-03-19gnu: tilda: Update to 1.4.1....* gnu/packages/terminals.scm (tilda): Update to 1.4.1. [arguments]: Rename 'autogen phase to 'bootstrap. Clean up 'bootstrap phase. Efraim Flashner
2018-03-19gnu: pigx-chipseq: Update to 0.0.8....* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.8. [inputs]: Add python-magic, python-xlrd, and trim-galore. [arguments]: Disable tests. Ricardo Wurmus
2018-03-19gnu: pigx-scrnaseq: Use pandoc-1....* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: pigx-bsseq: Use pandoc-1....* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: pigx-chipseq: Use pandoc-1....* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: pigx-rnaseq: Use pandoc-1....* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: Add ghc-pandoc-citeproc-with-pandoc-1....* gnu/packages/haskell.scm (ghc-pandoc-citeproc-with-pandoc-1): New variable. Ricardo Wurmus
2018-03-18gnu: font-dejavu: Return #t from all phases....* gnu/packages/fonts.scm (font-dejavu)[arguments]: Return #t from the 'install-conf' phase. Mark H Weaver
2018-03-18gnu: qpdf: Return #t from all phases....* gnu/packages/pdf.scm (qpdf)[arguments]: Return #t from 'patch-paths' phase. Mark H Weaver
2018-03-18gnu: guile-gdbm-ffi: Add support for gdbm-1.14....* gnu/packages/patches/guile-gdbm-ffi-support-gdbm-1.14.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-gdbm-ffi)[inputs]: Move above arguments. Add the patch, and the 'patch' program. [propagated-inputs]: Move above arguments. [arguments]: In the builder, add code to apply the patch. Mark H Weaver
2018-03-18gnu: guile-gdbm-ffi: Use 'invoke'....* gnu/packages/guile.scm (guile-gdbm-ffi)[arguments]: Use 'invoke' instead of 'system*'. Mark H Weaver
2018-03-18gnu: cups: Return #t from all phases....* gnu/packages/cups.scm (cups, cups-minimal): Return #t from all phases. Mark H Weaver
2018-03-19Merge branch 'master' into stagingMarius Bakke
2018-03-18git-download: Fix recursive checkouts....* guix/git-download.scm (git-fetch)<build>: Fix match on INPUTS, which may contain package outputs. Eric Bavier
2018-03-19gnu: Add r-abbyyr....* gnu/packages/cran.scm (r-abbyyr): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Vijayalakshmi Vedantham
2018-03-18glob: Add an extra glob pattern compilation stage....* guix/glob.scm (compile-glob-pattern): Rename to... (string->sglob): ... this. (compile-sglob, string->compiled-sglob): New procedures. (glob-match?): Replace '?, 'range, and 'set with a single clause. * tests/glob.scm (test-compile-glob-pattern): Rename to... (test-string->sglob): ... this. Adjust accordingly. (test-glob-match): Use 'string->compiled-sglob' instead of 'compile-glob-pattern'. * gnu/build/linux-modules.scm (read-module-aliases): Use 'string->compiled-sglob' instead of 'compile-glob-pattern'. Ludovic Courtès
2018-03-18glob: Support square brackets in patterns....* guix/glob.scm (wildcard-indices): Remove. (parse-bracket): New procedure. (compile-glob-pattern): Rewrite. Support square brackets for sets and ranges. (glob-match?): Support sets and ranges. * tests/glob.scm (test-compile-glob-pattern) (test-glob-match): New macros. Use them to rewrite the existing tests, and add new tests. Ludovic Courtès
2018-03-18linux-modules: 'load-linux-module*' honors BLACK-LIST in recursive calls....* gnu/build/linux-modules.scm (load-linux-module*): Pass BLACK-LIST in recursive call. Ludovic Courtès
2018-03-18linux-modules: Add 'current-kernel-directory'....* gnu/build/linux-modules.scm (current-kernel-directory): New procedure. (current-alias-file): Use it. Ludovic Courtès
2018-03-18vm: Display a backtrace upon error by default....* gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass #:on-error to 'base-initrd'. Ludovic Courtès
2018-03-18tests: elpa: Don't actually download files....* tests/elpa.scm (eval-test-with-elpa): Mock 'url-fetch'. Ludovic Courtès
2018-03-18import: elpa: Return 'license:gpl3+ for ELPA only....Fixes <https://bugs.gnu.org/30836>. Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>. * guix/import/elpa.scm (elpa-package->sexp): Add LICENSE parameter and honor it. (elpa->guix-package): Pass 'license:gpl3+ only when REPO is 'gnu. Ludovic Courtès
2018-03-18import: elpa: Adjust test for HTTPS URLs....This is a followup to 44dd3d579db3aa467e41d0b431029e46cae8e12d. * tests/elpa.scm (eval-test-with-elpa): Use https. Ludovic Courtès
2018-03-18gnu: youtube-dl: Update to 2018.03.14....* gnu/packages/video.scm (youtube-dl): Update to 2018.03.14. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Sohom Bhattacharjee
2018-03-18gnu: wayland: Disable failing tests....* gnu/packages/freedesktop.scm (wayland)[arguments]: Disable tests that fail in the build environment. Ricardo Wurmus
2018-03-18gnu: shotwell: Update to 0.28.0....* gnu/packages/gnome.scm (shotwell): Update to 0.28.0. Christopher Baines
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