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2020-06-22gnu: r-biomart: Update to 2.44.1....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.44.1. Ricardo Wurmus
2020-06-22gnu: r-genomeinfodb: Update to 1.24.2....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.24.2. Ricardo Wurmus
2020-06-22gnu: r-gdsfmt: Update to 1.24.1....* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.1. Ricardo Wurmus
2020-06-22gnu: r-cicero: Update to 1.6.1....* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.1. [propagated-inputs]: Add r-stringi. Ricardo Wurmus
2020-06-22gnu: r-cytoml: Update to 2.0.5....* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.5. [propagated-inputs]: Add r-xml2. Ricardo Wurmus
2020-06-22gnu: r-wiggleplotr: Update to 1.12.1....* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.1. Ricardo Wurmus
2020-06-22gnu: r-regioner: Update to 1.20.1....* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.1. Ricardo Wurmus
2020-06-22gnu: Add r-rlinsolve....* gnu/packages/cran.scm (r-rlinsolve): New variable. Ricardo Wurmus
2020-06-22gnu: cuirass: Update to 0.0.1-33-61cc56f6....* gnu/packages/ci.scm (cuirass): Update to 0.0.1-33-61cc56f6. Mathieu Othacehe
2020-06-22gnu: xl2tpd: Fix typo....* gnu/packages/vpn.scm (xl2tpd)[arguments]: Turn "-DPPD" into "-DPPPD". Mathieu Othacehe
2020-06-22gnu: express: Update to 1.5.3....* gnu/packages/bioinformatics.scm (express): Update to 1.5.3. [source]: Fetch from Github. [arguments]: Add phase "remove-update-check". Ricardo Wurmus
2020-06-22gnu: youtube-dl: Update to 2020.06.16....* gnu/packages/video.scm (youtube-dl): Update to 2020.06.16. Tobias Geerinckx-Rice
2020-06-22gnu: vmpk: Update home page....gnu/packages/music.scm (vmpk)[home-page]: Update TLD and use HTTPS. Tobias Geerinckx-Rice
2020-06-22gnu: bison-3.6: Don't change the name of the package....This is a follow-up to commit 512d23c65d82bb874ca1fb3c12095b1cec8bbfca. * gnu/packages/bison (bison-3.6)[name]: Remove the overridden value. Jakub Kądziołka
2020-06-21gnu: linux-libre@4.14: Update to 4.14.185....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.185. (linux-libre-4.14-pristine-source): Update hash. Mark H Weaver
2020-06-21gnu: linux-libre@4.9: Update to 4.9.228....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.228. (linux-libre-4.9-pristine-source): Update hash. Mark H Weaver
2020-06-21gnu: linux-libre@4.4: Update to 4.4.228....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.228. (linux-libre-4.4-pristine-source): Update hash. Mark H Weaver
2020-06-21gnu: Add r-boruta....* gnu/packages/statistics.scm (r-boruta): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Peter Lo
2020-06-22gnu: xmoto: Update to 0.6.1....* gnu/packages/games.scm (xmoto): Update to 0.6.1. [arguments]: Remove phase installing man pages, now properly handled by the installation script. Nicolas Goaziou
2020-06-21gnu: emacs-relint: Update to 1.18....* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.18. Nicolas Goaziou
2020-06-21gnu: guile: Add 3.0.3....* gnu/packages/guile.scm (guile-3.0.3): New variable. Ludovic Courtès
2020-06-21gnu: Add seahorse-adventures....* gnu/packages/games.scm (seahorse-adventures): New variable. Nicolas Goaziou
2020-06-21gnu: Add font-mplus-testflight....* gnu/packages/fonts.scm (font-mplus-testflight): New variable. Julien Lepiller
2020-06-21gnu: k3b: Update to 20.04.2....* gnu/packages/kde-multimedia.scm (k3b): Update to 20.04.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timotej Lazar
2020-06-21gnu: k3b: Note the runtime dependency on udisks-service....* gnu/packages/kde-multimedia.scm (k3b)[description]: Note that udisks-service should be enabled. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timotej Lazar
2020-06-21gnu: k3b: Add inputs for libraries loaded at runtime....Patch the source to load these from absolute paths. Actual loading is done by the Qt library, so we cannot use k3b’s runpath. * gnu/packages/kde-multimedia.scm (k3b)[inputs]: Add libcdio-paranoia and libdvdcss. [arguments]<#:phases>[set-absolute-library-paths]: New phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timotej Lazar
2020-06-21gnu: k3b: Add inputs for external programs....* gnu/packages/kde-multimedia.scm (k3b)[inputs]: Add cdrdao, dvd+rw-tools, libburn and sox. [arguments]<#:phases>[wrap-path]: New phase to wrap the binary with paths to the above. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timotej Lazar
2020-06-21gnu: Add cdrdao....* gnu/packages/cdrom.scm (cdrdao): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timotej Lazar
2020-06-21channels: 'authenticate-channel' doesn't check relation with intro commit....Fixes <https://bugs.gnu.org/41908>. Reported by Jan Nieuwenhuizen <janneke@gnu.org>. The relation check imposed an extra restriction that was unnecessary: it's enough to authenticate the set difference between the closure of START-COMMIT and that of END-COMMIT. Any attempt to jump to an unrelated commit would lead to the authentication failure of one commit on the way. * guix/channels.scm (authenticate-channel): Remove extra 'commit-relation' check when (null? commits). Ludovic Courtès
2020-06-21git-authenticate: Ignore authenticated commit cache when it's not #o600....* guix/git-authenticate.scm (previously-authenticated-commits): Stat PORT; return the empty list if it's no #o600 and change it to #o600. Ludovic Courtès
2020-06-21gnu: add convmv....* gnu/packages/convmv.scm: New file. * gnu/local.mk: Add it to build. Signed-off-by: Julien Lepiller <julien@lepiller.eu> Leo Prikler
2020-06-21gnu: Add font-fontna-yasashisa-antique....gnu/packages/fonts.scm (font-fontna-yasashisa-antique): New variable. Julien Lepiller
2020-06-21services: childhurd: Support more than one instance....* gnu/services/virtualization.scm (<hurd-vm-configuration>)[options]: Remove "--hda" option. [id,net-options]: New fields. (hurd-vm-net-options): New procedure. Parameterize port forwarding with ID. * gnu/services/virtualization.scm (hurd-vm-shepherd-service): Use them. Parameterize provision with ID, if set. Hardcode "--hda" option for image. * doc/guix.texi (Virtualization Services): Document new fields. Update for hardcoding of "--hda". Jan (janneke) Nieuwenhuizen
2020-06-21gnu: Add poke....* gnu/packages/engineering.scm (poke): New variable. * gnu/packages/bison.scm (bison-3.6): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> B. Wilson
2020-06-21gnu: git-annex: Update to 8.20200617....* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20200617. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Kyle Meyer
2020-06-21gnu: emacs-hy-mode: Update to 1.0.4....* gnu/packages/emacs-xyz.scm (emacs-hy-mode): Update to 1.0.4. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Vinicius Monego
2020-06-21system: Add 'sg' and 'newgrp' to %SETUID-PROGRAMS....* gnu/system.scm (%setuid-programs): Add 'sg' and 'newgrp'. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Brice Waegeneire
2020-06-21gnu: xmoto: Unbundle ODE and libccd....* gnu/packages/games.scm (xmoto): Unbundle ODE and libccd. [inputs]: Add ode. Nicolas Goaziou
2020-06-21gnu: xmoto: Update to 0.6.0-0-f7ca787....* gnu/packages/games.scm (xmoto): Update to 0.6.0-0-f7ca787. [source]: Remove patches. [arguments]: Remove make-flags keyword. * gnu/packages/patches/xmoto-remove-glext.patch: * gnu/packages/patches/xmoto-reproducible.patch: * gnu/packages/patches/xmoto-utf8.patch: Delete files. * gnu/local.mk: Register previous deletions. Nicolas Goaziou
2020-06-21gnu: emacs-hyperbole: Use inputs instead of propagated inputs....* gnu/packages/emacs-xyz.scm (emacs-hyperbole)[arguments]: Replace domainname with dnsdomainname, not hostname. [propagated-inputs]: move to... [inputs]: ...this. Nicolas Goaziou
2020-06-21gnu: emacs-magit: Update to 0746bf1b....* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 0746bf1b. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Pierre Langlois
2020-06-20gnu: emacs-hyperbole: Update to 7.0.6....* gnu/packages/emacs-xyz.scm (emacs-hyperbole): Update to 7.0.6. [source]: Use GNU ELPA URL. Remove some patches. [arguments]: Add phase. * gnu/packages/patches/emacs-hyperbole-do-not-check-dir.patch: Delete file. * gnu/packages/patches/emacs-hyperbole-domainname.patch: Delete file. * gnu/local.mk: Register sole patch. Nicolas Goaziou
2020-06-20gnu: gnutls: Pass #:tests? unconditionally....* gnu/packages/tls.scm (gnutls)[arguments]: Add #:tests? unconditionally. Ludovic Courtès
2020-06-20gnu: gnutls: Leave #:disallowed-references empty for GNU/Hurd....Partly fixes <https://bugs.gnu.org/41775>. This is a followup to a9bcc6474667d6699500f03d69f9c8212a50d711. * gnu/packages/tls.scm (gnutls)[arguments]: Let #:disallowed-references empty when 'hurd-target?' returns true. Ludovic Courtès
2020-06-20build-system/gnu: Cross builds properly handle #:allowed-references & co....Fixes <https://bugs.gnu.org/41775>. * guix/build-system/gnu.scm (gnu-cross-build)[canonicalize-reference]: Pass TARGET and SYSTEM to 'package-cross-derivation'. Ludovic Courtès
2020-06-20gnu: Mutt: Update to 1.14.4....* gnu/packages/mail.scm (mutt): Update to 1.14.4. Leo Famulari
2020-06-20gnu: Add emacs-hyperbole....* gnu/packages/emacs-xyz.scm (emacs-hyperbole): Add at 7.0.3 Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net> LaFreniere, Joseph
2020-06-20gnu: Add hashcash....* gnu/packages/networking.scm (hashcash): New variable. Jakub Kądziołka
2020-06-20news: Add 'fr' translation....* etc/news.scm: Add French translation. Ludovic Courtès
2020-06-20tests: Skip tests that requires gpg when gpg is unavailable....Partly fixes <https://bugs.gnu.org/41932>. Reported by Simen Endsjø <simendsjo@gmail.com>. * tests/git-authenticate.scm ("signed commits, SHA1 signature"): Use 'gpg+git-available?' in skip guard. Ludovic Courtès
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