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2022-03-29gnu: git-annex: Update to 10.20220322....* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20220322. [inputs]: Add ghc-http-client-restricted. Signed-off-by: Leo Famulari <leo@famulari.name> Kyle Meyer
2022-03-29gnu: Add ghc-http-client-restricted....* gnu/packages/haskell-web.scm (ghc-http-client-restricted): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Kyle Meyer
2022-03-29gnu: ghc-http-client-tls: Update to 0.3.6.1....* gnu/packages/haskell-web.scm (ghc-http-client-tls): Update to 0.3.6.1. Signed-off-by: Leo Famulari <leo@famulari.name> Kyle Meyer
2022-03-29gnu: ghc-http-client: Update to 0.7.11....* gnu/packages/haskell-web.scm (ghc-http-client): Update to 0.7.11. [inputs]: Add ghc-iproute. Signed-off-by: Leo Famulari <leo@famulari.name> Kyle Meyer
2022-03-29gnu: r-signac: Update to 1.6.0-2.458e647....* gnu/packages/bioinformatics.scm (r-signac): Update to 1.6.0-2.458e647. [propagated-inputs]: Remove r-annotationfilter, r-biocgenerics, r-biostrings, r-biovizbase, and r-ggbio; add r-qlcmatrix and r-tidyselect. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2022-03-29gnu: plink-ng: Update to 2.00a3-20220315....* gnu/packages/bioinformatics.scm (plink-ng): Update to 2.00a3-20220315. Ricardo Wurmus
2022-03-29gnu: Add r-cytobackbone....* gnu/packages/bioinformatics.scm (r-cytobackbone): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2022-03-29gnu: pigx-sars-cov2-ww: Update to 0.0.5....* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.5. [source]: Remove patch. [arguments]: Disable tests. * gnu/packages/patches/pigx-sars-cov2-ww-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Ricardo Wurmus
2022-03-29gnu: pigx-rnaseq: Update to 0.0.20....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.20. [source]: Remove patch. [inputs]: Add megadepth. * gnu/packages/patches/pigx-rnaseq-no-citeproc.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it. Ricardo Wurmus
2022-03-29gnu: kpeoplevcard: Use mirror URI....* gnu/packages/kde-pim.scm (kpeoplevcard)[source]: Use kde mirror URI. Efraim Flashner
2022-03-29gnu: pulseaudio-qt: Use mirror URI....* gnu/packages/kde-frameworks.scm (pulseaudio-qt)[source]: Use kde mirror URI. Efraim Flashner
2022-03-29download: Use https for main KDE source....* guix/download.scm (%mirrors)[kde]: Use https URIs for main KDE mirrors. * tests/lint.scm ("mirror-url: kde suggestion"): New test. Efraim Flashner
2022-03-29gnu: neovim: Update to 0.6.1....* gnu/packages/vim.scm (neovim): Update to 0.6.1. Build neovim with LuaJIT in the supported platforms. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Luis Henrique Gomes Higino
2022-03-29gnu: Add tree-sitter....* gnu/packages/text-editors.scm (tree-sitter): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Luis Henrique Gomes Higino
2022-03-29gnu: Add xfce4-dict....* gnu/packages/xfce.scm (xfce4-dict): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Feng Shu
2022-03-29gnu: poezio: Update to 0.13.2....* gnu/packages/messaging.scm (poezio): Update to 0.13.2. [arguments]: Remove trailing boolean and use new style. [inputs]: Remove unused python input. Signed-off-by: Ludovic Courtès <ludo@gnu.org> jgart
2022-03-29gnu: openmpi: Update to 4.1.2...* gnu/packages/mpi.scm (openmpi): Update to 4.1.2 Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philippe SWARTVAGHER
2022-03-29gnu: slurm: Install libpmi2....* gnu/packages/parallel.scm (slurm)[source](snippet): Let PMI2 through. [arguments]: In phase 'install-libpmi', install "contribs/pmi2". [license]: Add 'non-copyleft'. Ludovic Courtès
2022-03-29gnu: mercury: Remove trailing #T from phases and snippet....* gnu/packages/mercury.scm (mercury)[arguments]<#:phases>: Remove trailing #T. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> jgart
2022-03-29gnu: python-livereload: Update to 2.6.3....* gnu/packages/python-web.scm (python-livereload): Update to 2.6.3. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> jgart
2022-03-29gnu: solfege: Remove trailing booleans....* gnu/packages/music.scm (solfege): Remove trailing booleans. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> jgart
2022-03-29gnu: python-port-for: Remove trailing boolean....* gnu/packages/python-web.scm (python-port-for)[arguments]: Remove trailing boolean from lambda function. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> jgart
2022-03-29gnu: dnsmasq: Fix cross-compilation....* gnu/packages/dns.scm (dnsmasq)[arguments]: Use PKG-CONFIG-FOR-TARGET. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Brian Kubisiak
2022-03-28gnu: munge: Fix cross-compiling....* gnu/packages/admin.scm (munge)[arguments]: Add configure-flag to set path to libgcrypt prefix. Add configure flags when cross-compiling to assume support for pipes. Efraim Flashner
2022-03-28gnu: freeipmi: Fix cross-compiling....* gnu/packages/freeipmi.scm (freeipmi)[arguments]: Assume support for /dev/random and /dev/urandom when cross compiling. Efraim Flashner
2022-03-28gnu: sdsl-lite: Adjust inputs....* gnu/packages/datastructures.scm (sdsl-lite)[native-inputs]: Move libdivsufsort from here ... [propagated-inputs]: ... to here. Efraim Flashner
2022-03-28gnu: rdma-core: Fix cross-compiling....* gnu/packages/linux.scm (rdma-core)[arguments]: Add configure-flag when cross-compiling to find pkg-config. Efraim Flashner
2022-03-28gnu: ansible: Use GUIX_PYTHONPATH in the search path specification....* gnu/packages/admin.scm (ansible)[native-search-paths]: Use GUIX_PYTHONPATH. Maxim Cournoyer
2022-03-28gnu: openboardview: Do not recursively clone source....This is a follow up to commit ad85ca09777052426e801788032beb7592f0f21a. * gnu/packages/electronics.scm (openboardview) [source]<git-reference>: Delete the recursive? field. Maxim Cournoyer
2022-03-28gnu: Add r-cycombine....* gnu/packages/bioconductor.scm (r-cycombine): New variable. Mădălin Ionel Patrașcu
2022-03-28gnu: Add r-homologene....* gnu/packages/cran.scm (r-homologene): New variable. Ricardo Wurmus
2022-03-28gnu: zig: Remove unneeded patch....* gnu/packages/zig.scm (zig)[source]: Remove one patch. * gnu/packages/patches/zig-disable-libc-note-test.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2022-03-28gnu: gitolite: Add bash-minimal....* gnu/packages/version-control.scm (gitolite)[arguments]: Remove trailing #t. [inputs]: Add bash-minimal. Efraim Flashner
2022-03-28gnu: gitolite: Don't hardcode path to svnserve....* gnu/packages/version-control.scm (gitolite)[arguments]: Adjust custom 'patch-source phase to search for svnserve in $PATH. Efraim Flashner
2022-03-27gnu: Go: Update to 1.17.8 [security fixes]....Go 1.17.8 (released 2022-03-03) includes a security fix to the regexp/syntax package[0], as well as bug fixes to the compiler, runtime, the go command, and the crypto/x509 and net packages. See the Go 1.17.8 milestone[1] on the upstream issue tracker for details. [0] CVE-2022-24921 and https://go.dev/issue/51112. [1] https://github.com/golang/go/issues?q=milestone%3AGo1.17.8+label%3ACherryPickApproved * gnu/packages/golang.scm (go-1.17): Update to 1.17.8. Signed-off-by: Leo Famulari <leo@famulari.name> Pier-Hugues Pellerin
2022-03-27gnu: Go 1.16: Update to 1.16.15 [security fixes]....Go 1.16.15 (released 2022-03-03) includes a security fix to the regexp/syntax package[0], as well as bug fixes to the compiler, runtime, the go command, and the net package. See the Go 1.16.15 milestone[1] on the upstream issue tracker for details. [0] CVE-2022-24921 and https://go.dev/issue/51112. [2] https://github.com/golang/go/issues?q=milestone%3AGo1.16.15+label%3ACherryPickApproved * gnu/packages/golang.scm (go-1.16): Update to 1.16.15. Signed-off-by: Leo Famulari <leo@famulari.name> Pier-Hugues Pellerin
2022-03-27gnu: mcomix: Install messages....* gnu/packages/image-viewer.scm (mcomix)[install-data]: Also install messages subdirectory. Liliana Marie Prikler
2022-03-26gnu: linux-libre: Add linux-libre 5.17....* gnu/packages/linux.scm (linux-libre-5.17-version, linux-libre-5.17-gnu-revision, deblob-scripts-5.17, linux-libre-5.17-pristine-source, linux-libre-5.17-source, linux-libre-headers-5.17, linux-libre-5.17): New variables. * gnu/packages/aux-files/linux-libre/5.17-arm.conf, gnu/packages/aux-files/linux-libre/5.17-arm64.conf, gnu/packages/aux-files/linux-libre/5.17-i686.conf, gnu/packages/aux-files/linux-libre/5.17-x86_64.conf: New files. * Makefile.am (AUX_FILES): Add them. Leo Famulari
2022-03-26gnu: Borg: Update to 1.2.0....* gnu/packages/backup.scm (borg): Update to 1.2.0. [source]: Adjust the list of Cython files to rebuild. Remove an obsolete substitution. Delete the bundled xxhash. Blake2 is no longer bundled. [native-inputs]: Add python-dateutil. [inputs]: Add xxhash. Add python-msgpack-1.2. Remove libb2. [arguments]: Export BORG_LIBXXHASH_PREFIX to ensure the build script can find xxhash. Adjust the list of skipped tests and make the custom 'check' phase honor tests?. Install some more documentation. Leo Famulari
2022-03-26gnu: Add python-msgpack-1.0.2....* gnu/packages/python-xyz.scm (python-msgpack-1.0.2): New variable. Leo Famulari
2022-03-26gnu: mcomix: Wrap missing paths....* gnu/packages/image-viewers.scm (mcomix)[inputs]: Add gtk+. [arguments]<#:imported-modules,#:modules>: New arguments. <#:phases>: Add ‘glib-or-gtk-wrap’ and ‘gi-wrap’. Liliana Marie Prikler
2022-03-26gnu: mcomix: Update to 2.0.1....* gnu/packages/image-viewers.scm (mcomix): Update to 2.0.1. [source]: Use sourceforge once again. [inputs]: Add ‘python’. [arguments]: Convert to a list of G-Expressions. <#:tests?>: Drop. <#:phases>: Rename ‘configure’ to ‘patch-sources’. Also fix an assertion error in "mcomix/image_tools.py". No longer replace ‘build’ or ‘install’. Add ‘install-data’ phase after ‘install’. Use (this-package-input) to refer to the python input. Liliana Marie Prikler
2022-03-26gnu: Add xfdashboard....* gnu/packages/xfce.scm (xfdashboard): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Feng Shu
2022-03-25services: xorg: Remove xf86-input-synaptics from %default-xorg-modules....Fixes <https://issues.guix.gnu.org/35450>. This driver isn't intended to be installed by default as it takes precedence over the recommended xf86-input-libinput. * gnu/services/xorg.scm (%default-xorg-modules): Remove xf86-input-synaptics. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> SeerLite
2022-03-25gnu: nftables: Enable json output....* gnu/packages/linux.scm (nftables)[inputs]: Add jansson. Signed-off-by: Ludovic Courtès <ludo@gnu.org> fesoj000
2022-03-25gnu: nftables: Enable build of manpages....* gnu/packages/linux.scm (nftables)[native-inputs]: Add docbook2x. Signed-off-by: Ludovic Courtès <ludo@gnu.org> fesoj000
2022-03-25gnu: Add gigolo....* gnu/packages/xfce.scm (gigolo): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Feng Shu
2022-03-25gnu: Add curlie....* gnu/packages/curl.scm (curlie): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Imran Iqbal
2022-03-25gnu: akku: Update to 1.1.0....* gnu/packages/package-management.scm (akku): Update to 1.1.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> raingloom
2022-03-25gnu: hwloc: Update to 2.7.1....* gnu/packages/mpi.scm (hwloc-2): Update to 2.7.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philippe SWARTVAGHER
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