| Age | Commit message (Expand) | Author |
|---|
| 2021-12-05 | gnu: python-bwapy: Remove sanity-check....* gnu/packages/bioinformatics.scm (python-bwapy)[arguments]: Add phase
'relax-requirements to accept a slightly older version of wheel; remove the
'sanity-check phase.
| Ricardo Wurmus |
| 2021-12-05 | gnu: Remove python2-plastid....* gnu/packages/bioinformatics.scm (python2-plastid): Remove variable.
| Ricardo Wurmus |
| 2021-12-05 | gnu: Remove python2-twobitreader....* gnu/packages/bioinformatics.scm (python2-twobitreader): Remove variable.
| Ricardo Wurmus |
| 2021-12-05 | gnu: python-bbknn: Fix sanity-check phase....* gnu/packages/bioinformatics.scm (python-bbknn)[arguments]: Add phase
'do-not-fail-to-find-sklearn, which prevents the 'sanity-check phase from
failing.
| Ricardo Wurmus |
| 2021-12-05 | gnu: python-bbknn: Add missing input....* gnu/packages/bioinformatics.scm (python-bbknn)[propagated-inputs]: Add
python-scikit-learn.
| Ricardo Wurmus |
| 2021-12-05 | gnu: velvet: Add missing TeX package....* gnu/packages/bioinformatics.scm (velvet)[native-inputs]: Add
texlive-fonts-ec.
| Ricardo Wurmus |
| 2021-12-05 | gnu: velvet: Remove trailing #T....* gnu/packages/bioinformatics.scm (velvet)[arguments]: Remove trailing #T from
build phases.
| Ricardo Wurmus |
| 2021-12-05 | gnu: python-bwapy: Remove pre-built object files....* gnu/packages/bioinformatics.scm (python-bwapy)[source]: Remove all .o files
in a snippet.
| Ricardo Wurmus |
| 2021-12-05 | gnu: metabat: Remove trailing #T....* gnu/packages/bioinformatics.scm (metabat)[arguments]: Remove trailing #T
from build phases.
| Ricardo Wurmus |
| 2021-12-05 | gnu: clapack: Pass -fcommon to compiler....* gnu/packages/maths.scm (clapack)[arguments]: Set CFLAGS.
| Ricardo Wurmus |
| 2021-12-05 | gnu: clapack: Remove trailing #T....* gnu/packages/maths.scm (clapack)[arguments]: Remove trailing #T from build
phases.
| Ricardo Wurmus |
| 2021-12-05 | gnu: tla2tools: Remove remaining reference to %output....This is a follow-up to commit 7e6ee16d498f48b7bb74fefe5d3d67c62b5baa9d.
* gnu/packages/java.scm (tla2tools)[arguments]: Remove remaining reference to
%output.
| Ricardo Wurmus |
| 2021-12-05 | gnu: kraken2: Remove reference to %outputs....* gnu/packages/bioinformatics.scm (kraken2)[arguments]: Remove reference to
%outputs by using a gexp.
| Ricardo Wurmus |
| 2021-12-05 | gnu: methyldackel: Remove reference to %outputs....* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Remove reference
to %outputs by using a gexp.
| Ricardo Wurmus |
| 2021-12-05 | gnu: phast: Remove reference to %outputs....* gnu/packages/bioinformatics.scm (phast)[arguments]: Remove reference to
%outputs by using a gexp.
| Ricardo Wurmus |
| 2021-12-05 | gnu: libsbml: Remove references to %build-inputs....* gnu/packages/bioinformatics.scm (libsbml)[arguments]: Remove references to
%build-inputs by using a gexp.
| Ricardo Wurmus |
| 2021-12-05 | gnu: ataqv: Remove references to %outputs and %build-inputs....* gnu/packages/bioinformatics.scm (ataqv)[arguments]: Remove references to
%outputs and %build-inputs by using a gexp.
| Ricardo Wurmus |
| 2021-12-05 | gnu: adapterremoval: Remove reference to %outputs....* gnu/packages/bioinformatics.scm (adapterremoval)[arguments]: Remove
reference to %outputs by using a gexp.
| Ricardo Wurmus |
| 2021-12-05 | gnu: bbmap: Remove reference to %build-inputs....* gnu/packages/bioinformatics.scm (bbmap)[arguments]: Remove reference to
%build-inputs by using a gexp.
| Ricardo Wurmus |
| 2021-12-05 | gnu: intervaltree: Remove reference to %outputs....* gnu/packages/bioinformatics.scm (intervaltree)[arguments]: Remove reference
to %outputs by using a gexp.
| Ricardo Wurmus |
| 2021-12-05 | gnu: biobambam2: Remove reference to %build-inputs....* gnu/packages/bioinformatics.scm (biobambam2)[arguments]: Remove reference to
%build-inputs by using a gexp.
| Ricardo Wurmus |
| 2021-12-05 | gnu: sjcount: Remove reference to %build-inputs....* gnu/packages/bioinformatics.scm (sjcount)[arguments]: Remove reference to
%build-inputs by using a gexp.
| Ricardo Wurmus |
| 2021-12-05 | gnu: sjcount: Remove trailing #T....* gnu/packages/bioinformatics.scm (sjcount)[arguments]: Remove trailing #T
from build phases.
| Ricardo Wurmus |
| 2021-12-05 | gnu: dropseq-tools: Remove reference to %build-inputs....* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Remove reference
to %build-inputs by using a gexp.
| Ricardo Wurmus |
| 2021-12-05 | gnu: dropseq-tools: Remove trailing #T....* gnu/packages/bioinformatics.scm (dropseq-tools)[arguments]: Remove
trailing #T from build phases...
[source]: ...and from the snippet.
| Ricardo Wurmus |
| 2021-12-05 | gnu: tbb: Update to 2021.4.0....* gnu/packages/tbb.scm (tbb): Update to 2021.4.0.
| Marius Bakke |
| 2021-12-05 | gnu: Adjust for python-build-system behavior change....Commit cb72f9a773e0931ee3758c851d96007ded034e4c changed the semantics of
SITE-PACKAGES, but did not adjust all callers.
* gnu/packages/bioinformatics.scm (python-pyvcf)[arguments]: Adjust for
missing trailing slash.
* gnu/packages/maths.scm (nomad-optimizer)[arguments]: Likewise.
* gnu/packages/patchutils.scm (patchwork)[arguments]: Likewise.
| Marius Bakke |
| 2021-12-05 | gnu: python-pyvcf: Fix bytecode compilation....* gnu/packages/bioinformatics.scm (python-pyvcf)[arguments]: Add phase to
patch sample script.
| Marius Bakke |
| 2021-12-05 | gnu: python-whisper: Update to 1.1.8....* gnu/packages/monitoring.scm (python-whisper): Update to 1.1.8.
| Marius Bakke |
| 2021-12-05 | gnu: python-mailman-hyperkitty: Update to 1.2.0....* gnu/packages/mail.scm (python-mailman-hyperkitty): Update to 1.2.0.
[source](patches): Remove.
| Marius Bakke |
| 2021-12-05 | gnu: python-hyperkitty: Update to 1.3.5....* gnu/packages/mail.scm (python-hyperkitty): Update to 1.3.5.
[arguments]: Add pythonpath in test invokation.
[propagated-inputs]: Add PYTHON-MISTUNE-NEXT. Change from PYTHON-DJANGO-2.2
to PYTHON-DJANGO.
[native-inputs]: Add PYTHON-LXML.
| Marius Bakke |
| 2021-12-05 | gnu: Add python-mistune-next....* gnu/packages/python-xyz.scm (python-mistune-next): New variable.
| Marius Bakke |
| 2021-12-05 | gnu: python-django-haystack: Update to 3.1.1....* gnu/packages/django.scm (python-django-haystack): Update to 3.1.1.
[arguments]: Adjust substitution.
| Marius Bakke |
| 2021-12-05 | gnu: python-alembic: Update to 1.7.5....* gnu/packages/databases.scm (python-alembic): Update to 1.7.5.
[propagated-inputs]: Remove PYTHON-IMPORTLIB-RESOURCES.
| Marius Bakke |
| 2021-12-05 | gnu: ganeti: Add the output directory on GUIX_PYTHONPATH....This is a follow-up to commit 1ed567c8721ec2810fdb70f1c6fc8396a705d503.
* gnu/packages/virtualization.scm (ganeti)[arguments]: Adjust wrap phase to
include Ganetis own site-packages on $GUIX_PYTHONPATH.
| Marius Bakke |
| 2021-12-05 | gnu: python-webassets: Patch for Python 3.9....* gnu/packages/python-web.scm (python-webassets)[arguments]: Add
substitution.
| Marius Bakke |
| 2021-12-05 | gnu: python-django-mailman3: Update to 1.3.7....* gnu/packages/mail.scm (python-django-mailman3): Update to 1.3.7.
| Marius Bakke |
| 2021-12-05 | gnu: python-mailmanclient: Update to 3.3.3....* gnu/packages/mail.scm (python-mailmanclient): Update to 3.3.3.
| Marius Bakke |
| 2021-12-05 | gnu: python-django-url-filter: Adjust phase order....* gnu/packages/django.scm (python-django-url-filter)[arguments]: Move
substitution to after the unpack phase, so that it does not end up in the egg
info.
| Marius Bakke |
| 2021-12-05 | gnu: python-django-netfields: Propagate psycopg2....* gnu/packages/django.scm (python-django-netfields)[propagated-inputs]: Add
PYTHON-PSYCOPG2.
| Marius Bakke |
| 2021-12-05 | gnu: python-django-logging-json: Disable sanity check....* gnu/packages/django.scm (python-django-logging-json)[arguments]: Add
#:phases.
| Marius Bakke |
| 2021-12-05 | gnu: python-django-appconf: Fix tests....* gnu/packages/django.scm (python-django-appconf): Invoke django-admin with
custom pythonpath.
| Marius Bakke |
| 2021-12-05 | gnu: python-django-pipeline: Fix tests....* gnu/packages/django.scm (python-django-pipeline): Provide pythonpath to
django-admin.
| Marius Bakke |
| 2021-12-05 | gnu: python-django-sortedm2m: Fix tests....This is a follow-up to commit 283d5ac97f2f7663b788bd2fc3b9a27a3d82c7d5.
* gnu/packages/django.scm (python-django-sortedm2m): Invoke django-admin with
pythonpath and test settings.
| Marius Bakke |
| 2021-12-05 | gnu: python-django-contact-form: Update to 1.9....* gnu/packages/django.scm (python-django-contact-form): Update to 1.9.
| Marius Bakke |
| 2021-12-05 | gnu: python-django-jinja: Update to 2.9.1....* gnu/packages/django.scm (python-django-jinja): Update to 2.9.1.
| Marius Bakke |
| 2021-12-05 | gnu: python-django-haystack: Disable sanity check....* gnu/packages/django.scm (python-django-haystack)[arguments]: Delete one
phase. While at it, remove trailing #t's.
| Marius Bakke |
| 2021-12-05 | gnu: python-fakeredis: Update to 1.7.0....* gnu/packages/databases.scm (python-fakeredis): Update to 1.7.0.
| Marius Bakke |
| 2021-12-05 | gnu: Django packages propagate Django, after all....This reverts commit d7922f488b658b1adb5aff09f04a9bed0221aee1. Mainly to
placate the new 'sanity-check' phase, and because --with-input and friends
makes it easy to override.
* gnu/packages/django.scm (python-django-extensions,
python-django-simple-math-captcha, python-django-taggit,
python-easy-thumbnails, python-django-haystack, python-django-allauth,
python-django-debug-toolbar, python-django-debug-toolbar-alchemy,
python-django-assets, python-django-jinja, python-django-picklefield,
python-django-bulk-update, python-django-contact-form,
python-django-contrib-comments, python-django-pipeline, python-django-redis,
python-django-rq, python-django-q, python-django-sortedm2m,
python-django-appconf, python-django-statici18n, python-djangorestframework,
python-django-sekizai, python-django-crispy-forms,
python-django-override-storage, python-django-auth-ldap,
python-django-logging-json, python-django-netfields,
python-django-url-filter)[propagated-inputs]: Add PYTHON-DJANGO.
[native-inputs]: Remove it.
| Marius Bakke |
| 2021-12-05 | gnu: evolution: Build with libsoup 2....* gnu/packages/gnome.scm (evolution) [phase adjust-webkitgtk-version]: Remove
it.
[inputs]: Depend on webkitgtk-with-libsoup2 instead of webkitgtk.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Vivien Kraus |
