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2019-04-03gnu: Add r-rbowtie2....* gnu/packages/bioconductor.scm (r-rbowtie2): New variable. Ricardo Wurmus
2019-04-03gnu: r-rcas: Add upstream name....* gnu/packages/bioinformatics.scm (r-rcas)[properties]: Add upstream name. Ricardo Wurmus
2019-04-03gnu: Add r-zfpkm....* gnu/packages/bioconductor.scm (r-zfpkm): New variable. Ricardo Wurmus
2019-04-03gnu: Add r-webbioc....* gnu/packages/bioconductor.scm (r-webbioc): New variable. Ricardo Wurmus
2019-04-03gnu: Add r-widgettools....* gnu/packages/bioconductor.scm (r-widgettools): New variable. Ricardo Wurmus
2019-04-03gnu: Add r-wiggleplotr....* gnu/packages/bioconductor.scm (r-wiggleplotr): New variable. Ricardo Wurmus
2019-04-03gnu: Add r-wrench....* gnu/packages/bioconductor.scm (r-wrench): New variable. Ricardo Wurmus
2019-04-03gnu: gnu-mate-icon-theme-faenza: Update to 1.20.0....* gnu/packages/mate.scm (gnu-mate-icon-theme-faenza): Update to 1.20.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-polkit: Update to 1.22.0....* gnu/packages/mate.scm (mate-polkit): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-system-monitor: Update to 1.22.0....* gnu/packages/mate.scm (mate-system-monitor): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: pluma: Update to 1.22.0....* gnu/packages/mate.scm (pluma): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: engrampa: Update to 1.22.0....* gnu/packages/mate.scm (engrampa): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: eom: Update to 1.22.0....* gnu/packages/mate.scm (eom): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-utils: Update to 1.22.0....* gnu/packages/mate.scm (mate-utils): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Guy fleury
2019-04-03gnu: mate-screensaver: Update to 1.22.0....* gnu/packages/mate.scm (mate-screensaver): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-netbook: Update to 1.22.0....* gnu/packages/mate.scm (mate-netbook): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: backgrounds: Update to 1.22.0....* gnu/packages/mate.scm (backgrounds): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-calc: Update to 1.22.0....* gnu/packages/mate.scm (mate-calc): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-user-guide: Update to 1.22.0....* gnu/packages/mate.scm (mate-user-guide): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-control-center: Update to 1.22.0....* gnu/packages/mate.scm (mate-control-center): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: caja-extensions: Update to 1.22.0....* gnu/packages/mate.scm (caja-extensions): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: atril: Update to 1.22.0....* gnu/packages/mate.scm (atril): Update to 1.22.0. [arguments]<#:configure-flags>: Remove pre-GTK3 option. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: marco: Update to 1.22.0....* gnu/packages/mate.scm (marco): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: caja: Update to 1.22.0....* gnu/packages/mate.scm (caja): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-media: Update to 1.22.0....* gnu/packages/mate.scm (mate-media): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-applets: Update to 1.22.0....* gnu/packages/mate.scm (mate-applets): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-panel: Update to 1.22.0....* gnu/packages/mate.scm (mate-panel): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-menus: Update to 1.22.0....* gnu/packages/mate.scm (mate-menus): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: libmatekbd: Update to 1.22.0....* gnu/packages/mate.scm (libmatekbd): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: libmatemixer: Update to 1.22.0....* gnu/packages/mate.scm (libmatemixer): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-settings-daemon: Update to 1.22.0....* gnu/packages/mate.scm (mate-settings-daemon): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-session-manager: Update to 1.22.0....* gnu/packages/mate.scm (mate-session-manager): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-terminal: Update to 1.22.0...* gnu/packages/mate.scm (mate-terminal): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: libmatewether: Update to 1.22.0....* gnu/packages/mate.scm (libmatewether): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-desktop: Update to 1.22.2....* gnu/packages/mate.scm (mate-desktop): Update to 1.22.0. [inputs]: Add iso-codes. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-themes: Update to 3.22.19....* gnu/packages/mate.scm (mate-themes): Update to 3.22.19. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-icon-theme: Update to 1.22.0....* gnu/packages/mate.scm (mate-icon-theme): Update to 1.20.3. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-03gnu: mate-common: Update to 1.22.0....* gnu/packages/mate.scm (mate-common): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> guy fleury iteriteka
2019-04-02gnu: Add brlaser....* gnu/packages/printers.scm (brlaser): New variable. Ricardo Wurmus
2019-04-02gnu: wxmaxima: Update to 19.03.1....* gnu/packages/maths.scm (wxmaxima): Update to 19.03.1. Kei Kebreau
2019-04-02gnu: livemedia-utils: Update to 2019.03.06....* gnu/packages/video.scm (livemedia-utils): Update to 2019-03-06. [source]: Remove snippet. Leo Famulari
2019-04-02gnu: Syncthing: Update to 1.1.1....* gnu/packages/syncthing.scm (syncthing): Update to 1.1.1. Leo Famulari
2019-04-02gnu: Go standard crypto library: Update to 0.0.0-3.b7391e9 [security fixes]....Fixes a vulnerability in 'golang.org/x/crypto/salsa20' where, if more than 256 GiB of keystream is generated, or if the counter otherwise grows greater than 32 bits, the amd64 implementation will first generate incorrect output, and then cycle back to previously generated keystream. https://go.googlesource.com/crypto/+/b7391e95e576cacdcdd422573063bc057239113d * gnu/packages/golang.scm (go-golang-org-x-crypto-bcrypt, go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2, go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20, go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish, go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ed25519, go-golang-org-x-crypto-ripemd160, go-golang-org-x-crypto-blake2s, go-golang-org-x-crypto-sha3, go-golang-org-x-crypto-ssh-terminal): Update to 0.0.0-3.b7391e9. (go-golang-org-x-crypto-blake2s)[propagated-inputs]: Add go-golang-org-x-sys-cpu. (go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2, go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20, go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish, go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ssh-terminal): Inherit from go-golang-org-x-crypto-bcrypt. Leo Famulari
2019-04-02gnu: Add go-golang-org-x-sys-cpu....* gnu/packages/golang.scm (go-golang-org-x-sys-cpu): New variable. Leo Famulari
2019-04-02environment: '-C' creates namespaces where the user is not root....* guix/scripts/environment.scm (launch-environment/container): Add UID and GID. Use them in PASSWD and GROUPS. Pass them as #:guest-uid and #:guest-gid to 'call-with-container'. * tests/guix-environment-container.sh: Test the inner UID. In '--user' test, replace hard-coded 0 with 1000. * doc/guix.texi (Invoking guix environment): Adjust accordingly. Ludovic Courtès
2019-04-02linux-container: Make the guest UID and GID a parameter....* gnu/build/linux-container.scm (initialize-user-namespace): Add #:guest-uid and #:guest-gid parameters and honor them. (run-container): Likewise. (call-with-container): Likewise. * tests/containers.scm ("call-with-container, user namespace, guest UID/GID"): New test. Ludovic Courtès
2019-04-02nls: Update 'de' translation of the manual.Ludovic Courtès
2019-04-02gnu: pigx-scrnaseq: Use older loompy....* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace python-loompy with python-loompy-for-pigx-scrnaseq. Ricardo Wurmus
2019-04-02gnu: Add python-loompy-for-pigx-scrnaseq....* gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): New variable. Ricardo Wurmus
2019-04-02gnu: pigx-chipseq: Update to 0.0.40....* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.40. Ricardo Wurmus