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2019-09-16import/cran: Export %bioconductor-version....* guix/import/cran.scm (%bioconductor-version): Export it. Ricardo Wurmus
2019-09-16gnu: evolution: Wrap with required path variables....Fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36896>. * gnu/packages/gnome.scm (evolution)[arguments]: Add a ‘wrap-program’ phase. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Martin Becze
2019-09-16gnu: Add cl-prevalence....* gnu/packages/lisp.scm (cl-prevalence, sbcl-cl-prevalence, ecl-cl-prevalence): New variables. Pierre Neidhardt
2019-09-16gnu: Add s-sysdeps....* gnu/packages/lisp.scm (sbcl-s-sysdeps, cl-s-sysdeps, ecl-s-sysdeps): New variables. Pierre Neidhardt
2019-09-16gnu: Add herbstluftwm....* gnu/packages/wm.scm (herbstluftwm): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Kyle Andrews
2019-09-16gnu: emacs-dumb-jump: Update to 0.5.3....* gnu/packages/emacs-xyz.scm (emacs-dumb-jump): Update to 0.5.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brian Leung
2019-09-16gnu: git-annex: Update to 7.20190912....* gnu/packages/haskell-apps.scm (git-annex): Update 7.20190912. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer
2019-09-16gnu: git-annex: Build with MagicMime support....git-annex has a mechanism for configuring whether a file is added to the annex or stored in git. Building with MagicMime support makes it possible to condition the behavior on a file's MIME type. * gnu/packages/haskell-apps.scm (git-annex)[inputs]: Add ghc-magic. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer
2019-09-16gnu: Add ghc-magic....* gnu/packages/haskell-xyz.scm (ghc-magic): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer
2019-09-16gnu: git-annex: Update license....* gnu/packages/haskell-apps.scm (git-annex)[license]: Update main license to AGPLv3+ and include other licenses mentioned in the package's COPYRIGHT file. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kyle Meyer
2019-09-16pack: Provide a meaningful "repository name" for Docker....Previously, images produced by 'guix pack -f docker' would always show up as "profile" in the output of 'docker images'. With this change, 'docker images' shows a name constructed from the packages found in the image--e.g., "bash-coreutils-grep-sed". * guix/docker.scm (canonicalize-repository-name): New procedure. (generate-tag): Remove. (manifest): Add optional 'tag' parameter and honor it. (repositories): Likewise. (build-docker-image): Add #:repository parameter and pass it to 'manifest' and 'repositories'. * guix/scripts/pack.scm (docker-image)[build]: Compute 'tag' and pass it as #:repository to 'build-docker-image'. Ludovic Courtès
2019-09-16pack: Add packages in the order in which they appear on the command line....* guix/scripts/pack.scm (guix-pack)[manifest-from-args](packages): Reverse order of packages taken from OPTS. Ludovic Courtès
2019-09-16services: certbot: Add --manual-public-ip-logging-ok for manual challenges...* gnu/services/certbot.scm (certbot-command): Add --manual-public-ip-logging-ok flag to the certbot command when doing a manual challenge. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Carlo Zancanaro
2019-09-16gnu: retroarch: Update to 1.7.8.4....* gnu/packages/emulators.scm (retroarch): Update to 1.7.8.4. Rutger Helling
2019-09-16gnu: mgba: Update to 0.7.3....* gnu/packages/emulators.scm (mgba): Update to 0.7.3. Rutger Helling
2019-09-15gnu: Add r-variancepartition....* gnu/packages/bioconductor.scm (r-variancepartition): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-wavetiling....* gnu/packages/bioconductor.scm (r-wavetiling): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-genomegraphs....* gnu/packages/bioconductor.scm (r-genomegraphs): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-oligo....* gnu/packages/bioconductor.scm (r-oligo): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-affxparser....* gnu/packages/bioconductor.scm (r-affxparser): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-variantfiltering....* gnu/packages/bioconductor.scm (r-variantfiltering): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-shinythemes....* gnu/packages/cran.scm (r-shinythemes): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-shinytree....* gnu/packages/cran.scm (r-shinytree): New variable. Ricardo Wurmus
2019-09-15gnu: Add js-requirejs....* gnu/packages/javascript.scm (js-requirejs): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-reqon....* gnu/packages/bioconductor.scm (r-reqon): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-seqbias....* gnu/packages/bioconductor.scm (r-seqbias): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-affycoretools....* gnu/packages/bioconductor.scm (r-affycoretools): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-oligoclasses....* gnu/packages/bioconductor.scm (r-oligoclasses): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-reportingtools....* gnu/packages/bioconductor.scm (r-reportingtools): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-pfam-db....* gnu/packages/bioconductor.scm (r-pfam-db): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-affycontam....* gnu/packages/bioconductor.scm (r-affycontam): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-affycompatible....* gnu/packages/bioconductor.scm (r-affycompatible): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-affycomp....* gnu/packages/bioconductor.scm (r-affycomp): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-affydata....* gnu/packages/bioconductor.scm (r-affydata): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-timeseriesexperiment....* gnu/packages/bioconductor.scm (r-timeseriesexperiment): New variable. Ricardo Wurmus
2019-09-15gnu: Add r-wavcluster....* gnu/packages/bioconductor.scm (r-wavcluster): New variable. Ricardo Wurmus
2019-09-15gnu: r-spam: Update to 2.3-0....* gnu/packages/cran.scm (r-spam): Update to 2.3-0. Ricardo Wurmus
2019-09-15gnu: r-feather: Update to 0.3.5....* gnu/packages/cran.scm (r-feather): Update to 0.3.5. Ricardo Wurmus
2019-09-15gnu: emacs-zerodark-theme: Update to 4.6....* gnu/packages/emacs-xyz.scm (emacs-zerodark-theme): Update to 4.6. [source]: Update to new source uri. Giacomo Leidi
2019-09-15gnu: Add yubico-pam....* gnu/packages/authentication.scm (yubico-pam): New variable. Ricardo Wurmus
2019-09-14gnu: r-delayedmatrixstats: Update to 1.6.1....* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.6.1. Ricardo Wurmus
2019-09-14gnu: r-rhdf5lib: Update to 1.6.1....* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.6.1. Ricardo Wurmus
2019-09-14gnu: r-rtracklayer: Update to 1.44.4....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.4. Ricardo Wurmus
2019-09-14gnu: r-genomicranges: Update to 1.36.1....* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.36.1. Ricardo Wurmus
2019-09-14gnu: r-s4vectors: Update to 0.22.1....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.22.1. Ricardo Wurmus
2019-09-14gnu: r-mixomics: Update to 6.8.4....* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.4. Ricardo Wurmus
2019-09-14gnu: r-gtrellis: Update to 1.16.1....* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.1. Ricardo Wurmus
2019-09-14gnu: r-regioner: Update to 1.16.4....* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.4. Ricardo Wurmus
2019-09-14gnu: Add emacs-elixir-mode....* gnu/packages/emacs-xyz.scm (emacs-elixir-mode): New variable. Björn Höfling
2019-09-14gnu: wine-staging: Update to 4.16....* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.16. * gnu/packages/wine.scm (wine-staging): Update to 4.16. Rutger Helling
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