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2019-05-06gnu: r-annotationforge: Update to 1.26.0....* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.26.0. Ricardo Wurmus
2019-05-06gnu: r-dexseq: Update to 1.30.0....* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.30.0. Ricardo Wurmus
2019-05-06gnu: r-deseq2: Update to 1.24.0....* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.24.0. Ricardo Wurmus
2019-05-06gnu: r-genefilter: Update to 1.66.0....* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.66.0. Ricardo Wurmus
2019-05-06gnu: r-preprocesscore: Update to 1.46.0....* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.46.0. Ricardo Wurmus
2019-05-06gnu: r-rgraphviz: Update to 2.28.0....* gnu/packages/graph.scm (r-rgraphviz): Update to 2.28.0. Ricardo Wurmus
2019-05-06gnu: r-units: Update to 0.6-3....* gnu/packages/cran.scm (r-units): Update to 0.6-3. Ricardo Wurmus
2019-05-06gnu: Add r-dqrng....* gnu/packages/cran.scm (r-dqrng): New variable. Ricardo Wurmus
2019-05-06gnu: Add r-sitmo....* gnu/packages/cran.scm (r-sitmo): New variable. Ricardo Wurmus
2019-05-06gnu: Add r-clue....* gnu/packages/cran.scm (r-clue): New variable. Ricardo Wurmus
2019-05-06gnu: Add r-batchtools....* gnu/packages/cran.scm (r-batchtools): New variable. Ricardo Wurmus
2019-05-06gnu: Add r-blme....* gnu/packages/cran.scm (r-blme): New variable. Ricardo Wurmus
2019-05-06gnu: Add r-scrime....* gnu/packages/cran.scm (r-scrime): New variable. Ricardo Wurmus
2019-05-06gnu: Add r-grimport2....* gnu/packages/cran.scm (r-grimport2): New variable. Ricardo Wurmus
2019-05-06gnu: Add r-rcpphnsw....* gnu/packages/cran.scm (r-rcpphnsw): New variable. Ricardo Wurmus
2019-05-06gnu: Add r-biocsingular....* gnu/packages/bioconductor.scm (r-biocsingular): New variable. Ricardo Wurmus
2019-05-06gnu: Add r-base64url....* gnu/packages/cran.scm (r-base64url): New variable. Ricardo Wurmus
2019-05-06guix: Update to Bioconductor 3.9....* guix/build-system/r.scm (bioconductor-uri): Use 3.9 archive URL. * guix/import/cran.scm (%bioconductor-version): Update to 3.9. Ricardo Wurmus
2019-05-05doc: Fix typo....* doc/guix.texi (VM): Add missing dot. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel
2019-05-05doc: Fix typo....* doc/guix.texi (xfce-desktop-service-type): Fix sentence. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel
2019-05-05doc: Fix typo....* doc/guix.texi (page-log@files-configuration@CUPS): "Page log" instead of "access log". Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel
2019-05-05doc: Fix typos....* doc/guix.texi (set-xorg-configuration): Add missing @code tag. (error-log@files-configuration@CUPS): "Error log" instead of "access log". Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel
2019-05-05doc: Fix typo....* doc/guix.texi (rsync-service-type): Add missing sentence. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel
2019-05-05doc: Fix typo....* doc/guix.texi (openntpd-configuration): Fix spelling issues. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel
2019-05-05doc: Fix typos....* doc/guix.texi (rakudo-build-system, libvirt-configuration, pam-krb5): Missing period between sentences. (gnu services vpn): Fix server spelling. (agetty-configuration): Add missing subject in the sentence. (udev-service): Fix markup for Scheme procedures. ({gnome,xfce,mate}-desktop-service): Add missing colon after default. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel
2019-05-05installer: Fix typo....* gnu/installer/newt/menu.scm (run-menu-page): Add missing space after period. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Miguel
2019-05-05Correct email and license info for Brendan Tildesley....* gnu/packages/audio.scm: Correct email and license info. * gnu/packages/ebook.scm: Correct email and license info. * gnu/packages/fonts.scm: Correct email and license info. * gnu/packages/freedesktop.scm: Correct email and license info. * gnu/packages/gnome.scm: Correct email and license info. * gnu/packages/linux.scm: Correct email and license info. * gnu/packages/lxde.scm: Correct email and license info. * gnu/packages/python-web.scm: Correct email and license info. * gnu/packages/python-xyz.scm: Correct email and license info. * gnu/packages/python.scm: Correct email and license info. * gnu/packages/video.scm: Correct email and license info. * gnu/packages/web.scm: Correct email and license info. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Update to 3.42.0....* gnu/packages/ebook.scm (calibre): Update to 3.42.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Danny Milosavljevic
2019-05-05gnu: calibre: Shorten long line....* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]: Shorten long line. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Install man pages....* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[install-man-pages]: New phase. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Delete various junk from source....* gnu/packages/ebook.scm (calibre)[source](snippet): Delete various junk from source. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Remove libxrender as an input....* gnu/packages/ebook.scm (calibre)[inputs]: Remove libxrender. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Unbundle python2-odfpy....* gnu/packages/ebook.scm (calibre)[snippet]: Remove all of src/odf. [inputs]: Add python2-odfpy. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Remove some comments....* gnu/packages/ebook.scm (calibre): There is no unrar in Guix currently, and pdftohtml is in poppler, so we can remove this comment. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Enable tests....* gnu/packages/ebook.scm (calibre): Enable tests. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Disable sqlite test....* gnu/packages/patches/calibre-remove-test-sqlite.patch: New file. * gnu/packages/ebook.scm (calibre)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Disable Qt test....* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Disable Qt test. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Disable bs4 test....* gnu/packages/patches/calibre-remove-test-bs4.patch: New file. * gnu/packages/ebook.scm (calibre)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Use "linux.py" to install desktop files....* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Modify. [install-mimetypes]: Remove. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: Add python-soupsieve, python2-soupsieve....* gnu/packages/python-xyz.scm (python-soupsieve): New variable. (python2-soupsieve): New variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Disable tests that require networking....* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[configure]: Modify. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Remove unrar test....* gnu/packages/patches/calibre-remove-test-unrar.patch: New file. * gnu/packages/ebook.scm (calibre)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: python-regex, python2-regex: Update to 2019.04.14....* gnu/packages/python.scm (python-regex, python2-regex): Update to 2019.04.14. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Add python2-html2text as an input....* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-html2text. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: Add python-html2text, python2-html2text....* gnu/packages/python-web.scm (python-html2text): New variable. (python2-html2text): New variable. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Move font unbundling to after check phase....* gnu/packages/ebook.scm (calibre)[snippet]: Modify. [native-inputs]: Remove font-liberation. [inputs]: Add font-liberation. [arguments]<#:phases>[install-font-liberation]: Delete phase. [unbundle-font-liberation]: New phase. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Add missing dependencies as indicated by tests....* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-html5lib, python2-psutil. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Build rapydscript....* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]: Modify. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Use system mathjax....* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>[build-extra]: New phase. [inputs]: Add js-mathjax. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley
2019-05-05gnu: calibre: Update to 3.41.3....* gnu/packages/ebook.scm (calibre): Update to 3.41.3. [inputs]: Replace python2-cssutils by python2-css-parser. [snippet]: Modify. * gnu/packages/patches/calibre-use-packaged-feedparser.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Brendan Tildesley