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2019-11-27gnu: gcc-7: Update to 7.5.0.Efraim Flashner
* gnu/packages/gcc.scm (gcc-7): Update to 7.5.0.
2019-11-27gnu: bash: Update to patch level 11.Efraim Flashner
* gnu/packages/bash.scm (%patch-series-5.0): Add patches 8 through 11.
2019-11-27gnu: binutils: Update to 2.33.1.Efraim Flashner
* gnu/packages/base.scm (binutils): Update to 2.33.1.
2019-11-26gnu: gsl: Update to 2.6.Efraim Flashner
* gnu/packages/maths.scm (gsl): Update to 2.6. [source]: Remove patch. * gnu/packages/patches/gsl-test-i686.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-11-26gnu: libgcrypt: Update to 1.8.5.Efraim Flashner
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.8.5. [replacement]: Remove field. (libgcrypt-1.8.5): Remove variable.
2019-11-26gnu: bison: Update to 3.4.2.Efraim Flashner
* gnu/packages/bison.scm (bison): Update to 3.4.2.
2019-11-26gnu: libidn2: Update to 2.3.0.Efraim Flashner
* gnu/packages/libidn.scm (libidn2): Update to 2.3.0.
2019-11-16gnu: linux-libre: Remove cross-libc from CROSS_CPATH.Mathieu Othacehe
* gnu/packages/linux.scm (make-linux-libre*)[arguments]: Do not unset CROSS_CPATH completely, instead remove cross-libc from CROSS_CPATH in the same way that libc is removed from CPATH.
2019-11-16Merge remote-tracking branch master into core-updatesMathieu Othacehe
2019-11-15time-machine: Honor the standard build options.Ludovic Courtès
* guix/scripts/time-machine.scm (show-help): Call 'show-build-options-help'. (%options): Add %STANDARD-BUILD-OPTIONS. (%default-options): New variable. (parse-args): Pass (list %default-options) to 'parse-command-line' and remove #:build-options? parameter. (guix-time-machine): Call 'set-build-options-from-command-line' and wrap 'cached-channel-instance' call in 'with-status-verbosity'. * doc/guix.texi (Invoking guix time-machine): Mention common build options.
2019-11-15time-machine: Handle 'git-error' exceptions.Ludovic Courtès
* guix/scripts/pull.scm (with-git-error-handling): Export. * guix/scripts/time-machine.scm (guix-time-machine): Wrap body in 'with-git-error-handling'.
2019-11-15news: Add entry for "guix time-machine".Konrad Hinsen
* etc/news.scm: Add entry for 'guix time-machine'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-15inferior: 'cached-channel-instance' takes an open store connection.Konrad Hinsen
* guix/inferior.scm (cached-channel-instance): Take an explicit 'store' argument. (inferior-for-channels): Wrap call to 'cached-channel-instance' in 'with-store'. * guix/time-machine.scm (guix-time-machine): Wrap call to 'cached-channel-instance' in 'with-store'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-15Add 'guix time-machine'.Konrad Hinsen
* guix/scripts/time-machine.scm: New file. * Makefile.am: (MODULES): Add it. * guix/scripts/pull.scm (channel-list): Export. * guix/inferior.scm (cached-channel-instance): New procedure. (inferior-for-channels): Use it. * doc/guix.texi (Invoking guix time-machine): New section. (Channels): Cross-reference it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-15pull: Remove unused '--verbose' option.Ludovic Courtès
This option had been ignored since commit 0d39a3b98948314e135566b9315717695a9035ea (August 2018). * guix/scripts/pull.scm (show-help, %options): Remove "--verbose". (build-and-install): Remove #:verbose?, which was unused. (guix-pull): Adjust accordingly.
2019-11-15Revert "gnu: openmpi: Pass explicit "--with-*" configure flags."Ludovic Courtès
This reverts commit eaa52b5baa8fbb26a79890561d0c40344d1e1bf3, which would lead to build failures on systems other than x86_64-linux.
2019-11-15gnu: openmpi: Fix typo.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[inputs]: For UCX, check the supported systems of UCX, not PSM2.
2019-11-15gnu: tomb: Use system's sudo.Eric Bavier
* gnu/packages/crypto.scm (tomb)[arguments]: Disallow references to the "sudo" input. Remove it's path from the wrapper.
2019-11-15gnu: tomb: Add lsof input for "ps" and "slam".Eric Bavier
* gnu/packages/crypto.scm (tomb)[inputs]: Add lsof. [arguments]: Add it to the wrapper PATH.
2019-11-15gnu: tomb: Update to 2.7.Eric Bavier
* gnu/packages/patches/tomb-fix-errors-on-open.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/crypto.scm (tomb): Update to 2.7. [source]: Use the patch.
2019-11-15gnu: CMake: Add version 3.15.5.Ivan Vilata-i-Balaguer
Add CMake version 3.15.5 but do not replace the existing version to avoid triggering the rebuild of all CMake-based packages. See <https://issues.guix.gnu.org/issue/38060>. * gnu/packages/cmake.scm (cmake-3.15.5): Add CMake 3.15.5. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-11-15gnu: ungoogled-chromium: Update to 78.0.3904.97-0.acaf163.Marius Bakke
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for Chromium 78. (%chromium-version): Set to 78.0.3904.97. (%ungoogled-revision): Set to acaf16383f264d8a2f24142ad054c9b4355771d3. (%debian-revision): Set to e43d74632091324774a5049668782dba7b09cf72. (%chromium-origin, %ungoogled-origin, %debian-origin): Update hashes. (gentoo-patches, %auxiliary-patches): Remove variables. (ungoogled-chromium-source): Adjust Debian patches for 78. Don't apply %AUXILIARY-PATCHES. (libvpx/chromium): New variable. (ungoogled-chromium)[arguments]: Add substitution for ICU headers. Adjust other substitutions for 78. Remove obsolete workaround. Increase ulimit in 'build' phase. Don't install '22x22' icon, which no longer exists. [inputs]: Change from LIBVPX to LIBVPX/CHROMIUM. [properties]: Remove HIDDEN?. (ungoogled-chromium-wayland)[inputs]: Don't remove inherited inputs. (ungoogled-chromium-is-deprecated, ungoogled-chromium-wayland-is-deprecated): Remove variables.
2019-11-15gnu: gn: Enable tests.Marius Bakke
* gnu/packages/build-tools.scm (gn)[arguments]: Remove #:tests?. Override 'check' phase.
2019-11-15gnu: gn: Update to 0.0-1666.6e5ba2e.Marius Bakke
* gnu/packages/build-tools.scm (gn): Update to 0.0-1666.6e5ba2e. [arguments]: Do not override LDFLAGS.
2019-11-15gnu: openmpi: Raise the priority of the PSM2 component.Ludovic Courtès
This allows us to get better performance by default on machines with OmniPath hardware. * gnu/packages/patches/openmpi-psm2-priority.patch: New file. * gnu/packages/mpi.scm (openmpi)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-15gnu: psm: Add "debug" output.Ludovic Courtès
* gnu/packages/linux.scm (psm)[outputs]: New field.
2019-11-15gnu: openmpi, slurm: Switch to hwloc 2.x.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[inputs]: Switch to HWLOC-2. * gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
2019-11-15gnu: hwloc: Update to 2.1.0.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-2.0): Rename to... (hwloc-2): ... this. Update to 2.1.0 (hwloc-2.0): Define as deprecated. * gnu/packages/opencl.scm (pocl)[inputs]: Adjust accordingly.
2019-11-15gnu: slurm: Build shared libraries only.Ludovic Courtès
* gnu/packages/parallel.scm (slurm)[arguments]: Pass "--disable-static".
2019-11-15gnu: slurm: Update to 19.05.3-2.Ludovic Courtès
* gnu/packages/parallel.scm (slurm): Update to 19.05.3-2. [source](snippet): Keep "contribs/mpi" and its reference in 'Makefile.am'. [inputs]: Remove OPENSSL. [arguments]: Remove "--with-ssl". Add 'install-libpmi' phase.
2019-11-15gnu: Add Intel MPI Benchmarks.Ludovic Courtès
* gnu/packages/mpi.scm (intel-mpi-benchmarks): New variable.
2019-11-15gnu: rdma-core: Update to 26.0.Ludovic Courtès
* gnu/packages/linux.scm (rdma-core): Update to 26.0. [arguments]: Add "-DRST2MAN_EXECUTABLE=..." to #:configure-flags. [native-inputs]: Add PYTHON-DOCUTILS.
2019-11-15gnu: rdma-core: Use the "write" ioctl mode.Ludovic Courtès
* gnu/packages/linux.scm (rdma-core)[arguments]: Add "-DIOCTL_MODE=write" to #:configure-flags.
2019-11-15gnu: openmpi: Pass explicit "--with-*" configure flags.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-ucx", "--with-psm", and "--with-psm2".
2019-11-15gnu: ucx: Do not install static libraries.Ludovic Courtès
* gnu/packages/fabric-management.scm (ucx)[arguments]: Pass "--disable-static".
2019-11-15gnu: ucx: Enable InfiniBand support through Verbs.Ludovic Courtès
Until now, InfiniBand support was missing, as reported by "ucx_info -d" on a machine with InfiniBand networking. * gnu/packages/fabric-management.scm (ucx)[arguments]: Build with "--with-verbs".
2019-11-15scripts: system: Add --target option.Mathieu Othacehe
* guix/scripts/system.scm (%options): Add target option, (%default-options): ditto, (process-action): Rename existing target variable to target-file and pass new target variable to run-with-store procedure.
2019-11-15system: vm: Support cross-compilation.Mathieu Othacehe
* gnu/system.scm (system-linux-image-file-name): Add support for cross-built systems. Remove system argument that was ignored, (operating-system-kernel-file): adapt by removing ignored os argument. * gnu/system/vm.scm (expression->derivation-in-linux-vm): Add target argument and turn inputs into native-inputs. Pass target to qemu-command and gexp->derivation calls. (iso9660-image): Add target argument and pass it to expression->derivation-in-linux-vm. Remove qemu from inputs as it is not necessary. (qemu-image): Add target argument, also remove qemu from inputs. Pass target argument to expression->derivation-in-linux-vm call.
2019-11-15system: vm: Add arm64 support.Mathieu Othacehe
* gnu/build/vm.scm (load-in-linux-vm): Add target-arm64? argument and use it to pass correct arguments to qemu. * gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass the new target-arm64? argument added above. Do not add ESP partition on all ARM targets. Do not pass grub-efi package to initialize-hard-disk on ARM targets.
2019-11-15build: vm: Fix arm32 support.Mathieu Othacehe
* gnu/build/vm.scm (load-in-linux-vm): Disable qemu highmem support on ARM32 systems.
2019-11-15utils: Use target-aarch64? and target-arm? helpers.Mathieu Othacehe
* guix/utils.scm (target-aarch64?, target-arm?): New exported procedures.
2019-11-15gnu: cmake: Fix cross-compilation.Pierre-Moana Levesque
* gnu/packages/cmake.scm (cmake-minimal)[inputs]: Move all inputs to ... [native-inputs]: ... here, except for ncurses.
2019-11-15gnu: crda: Fix cross-compilationPierre-Moana Levesque
* gnu/packages/linux.scm (crda)[arguments]: Patch Makefile to use cross pkg-config when cross-compiling. Also search for wireless-regdb in both native-inputs and inputs. Set CC variable to cross-compiler when cross-compiling.
2019-11-15gnu: libnl: Move python outputs to separate packages.Mathieu Othacehe
Cross compiling python extensions is currently broken. To allow libnl cross compilation, move its python2 and python3 outputs to separate packages. * gnu/packages/linux.scm (libnl)[outputs]: Remove python2 and python3 and replace by ... (libnl-python-package): ... this new procedure, (libnl-python2, libnl-python3): new variables.
2019-11-15gnu: guile-sqlite3: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/patches/guile-sqlite3-fix-cross-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-sqlite3)[source]: Apply previous patch, [native-inputs]: add guile.
2019-11-15gnu: guile-gcrypt: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/gnupg.scm (guile-gcrypt) [native-inputs]: Add guile, [arguments]: add libgcrypt-config to PATH when cross-compiling.
2019-11-15gnu: doxygen: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/documentation.scm (doxygen)[arguments]: Force cmake to use iconv.h from cross-libc.
2019-11-15gnu: git: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/version-control.scm (git-cross-configure-flags): New variable, (git)[arguments]: add it to configure-flags. Also add cross curl-config script to PATH. (git-minimal): Add previous variable to configure-flags.
2019-11-15gnu: swig: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/swig.scm (swig)[inputs]: Add pcre that is needed when cross-compiling.
2019-11-15gnu: openldap: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/openldap.scm (openldap)[inputs]: Move groff from here to ... [native-inputs]: ... here. Also add bdb and automake. [arguments]: Add cross-compilation specific configure-flags. Do not strip when cross-compiling. Add a new fix-configure phase to update outdated config.sub and config.guess. Add a fix-cross-gcc phase to set CC variable to cross-compiler name when cross-compiling.
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