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2022-01-05gnu: r-ape: Update to 5.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-ape): Update to 5.6.
2022-01-05gnu: r-shadowtext: Update to 0.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-shadowtext): Update to 0.1.0.
2022-01-05gnu: r-ggpmisc: Update to 0.4.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.5.
2022-01-05gnu: r-ggpp: Update to 0.4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.3.
2022-01-05gnu: r-v8: Update to 4.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-v8): Update to 4.0.0.
2022-01-05gnu: r-rticles: Update to 0.22.Ricardo Wurmus
* gnu/packages/cran.scm (r-rticles): Update to 0.22.
2022-01-05gnu: r-datawizard: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-datawizard): Update to 0.2.2.
2022-01-05gnu: r-brio: Update to 1.1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-brio): Update to 1.1.3.
2022-01-05gnu: r-httpuv: Update to 1.6.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.4. * gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch: Adjust to version 1.6.4.
2022-01-05gnu: Add r-densestbayes.Ricardo Wurmus
* gnu/packages/cran.scm (r-densestbayes): New variable.
2022-01-05gnu: Add r-matrixextra.Ricardo Wurmus
* gnu/packages/cran.scm (r-matrixextra): New variable.
2022-01-05gnu: r-activedriverwgs: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.0.3.
2022-01-05gnu: r-activedriverwgs: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.2. [propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38, r-bsgenome-mmusculus-ucsc-mm9, and r-bsgenome-mmusculus-ucsc-mm10.
2022-01-05gnu: r-valr: Update to 0.6.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-valr): Move from here... * gnu/packages/bioconductor.scm (r-valr): ...to here. Update to 0.6.4. [propagated-inputs]: Add r-rtracklayer.
2022-01-05gnu: r-openssl: Use openssl instead of libressl.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl)[arguments]: Add phase to disable versioned linking. [inputs]: Replace libressl with openssl.
2022-01-05gnu: r-openssl: Update to 1.4.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.6.
2022-01-05guix/upstream: Let changed-inputs support the new input lists.Ricardo Wurmus
* guix/upstream.scm (changed-inputs): Add match clauses for new-style input lists.
2022-01-05tests: Add failing tests for changed-inputs on new style inputs.Ricardo Wurmus
* tests/upstream.scm ("changed-inputs returns changes to plain input list", "changed-inputs returns changes to all plain input lists"): New tests.
2022-01-05tests: Add tests for changed-inputs on old-style inputs.Ricardo Wurmus
All these tests pass, because they only test the old-style input alists with labels. * tests/upstream.scm ("changed-inputs returns no changes", "changed-inputs returns changes to labelled input list", "changed-inputs returns changes to all labelled input lists"): New tests.
2022-01-05gnu: musescore: Use new package style.Nicolas Goaziou
* gnu/packages/music.scm (musescore)[source]<snippet>: Remove trailing #T. [inputs]: Remove labels.
2022-01-05gnu: emacs-helm-cider: Update to 0.5.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-helm-cider): Update to 0.5.0.
2022-01-05gnu: emacs-emms: Update to 8.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 8.
2022-01-05gnu: python-django@2.2: Update hash.Marius Bakke
PyPI is serving a different tarball from the official home page, where this packager had downloaded it: <https://code.djangoproject.com/ticket/33411>. This is a follow-up to commit ad35d8c017fe5ddfb05341a90e171f36e9785526. * gnu/packages/django.scm (python-django-2.2)[source]: Update checksum.
2022-01-05gnu: python-django@2.2: Update to 2.2.26 [security fixes].Marius Bakke
This release fixes CVE-2021-45115, CVE-2021-45116, and CVE-2021-45452. * gnu/packages/django.scm (python-django-2.2): Update to 2.2.26.
2022-01-05gnu: python-django@3.2: Update to 3.2.11 [security fixes].Marius Bakke
This release fixes CVE-2021-45115, CVE-2021-45116, and CVE-2021-45452. * gnu/packages/django.scm (python-django-3.2): Update to 3.2.11.
2022-01-05gnu: python-django: Update to 4.0.1 [security fixes].Marius Bakke
This release fixes CVE-2021-45115, CVE-2021-45116, and CVE-2021-45452. * gnu/packages/django.scm (python-django-4.0): Update to 4.0.1.
2022-01-05gnu: uBlock Origin: Update to 1.40.4.Marius Bakke
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.40.4.
2022-01-05gnu: nmrpflash: Update to 0.9.16.Marius Bakke
* gnu/packages/admin.scm (nmrpflash): Update to 0.9.16.
2022-01-05gnu: lucene++: Use G-expressions.Tobias Geerinckx-Rice
* gnu/packages/rdf.scm (lucene++)[arguments]: Rewrite as G-expressions.
2022-01-05gnu: lucene++: Update to 3.0.8.Tobias Geerinckx-Rice
* gnu/packages/rdf.scm (lucene++): Update to 3.0.8. [source]: Add a nice snippet. [arguments]: Don't install the entire gtest suite. Add a custom 'check phase. [inputs]: Add zlib.
2022-01-05gnu: hangups: Update to 0.4.16.Tobias Geerinckx-Rice
* gnu/packages/messaging.scm (hangups): Update to 0.4.16. [propagated-inputs]: Upgrade python-protobuf-3.6 to python-protobuf.
2022-01-05gnu: amsynth: Use G-expressions.Tobias Geerinckx-Rice
* gnu/packages/music.scm (amsynth)[arguments]: Rewrite as G-expressions.
2022-01-05gnu: amsynth: Update to 1.12.3.Tobias Geerinckx-Rice
* gnu/packages/music.scm (amsynth): Update to 1.12.3.
2022-01-05gnu: moreutils: Use G-expressions.Tobias Geerinckx-Rice
* gnu/packages/moreutils.scm (moreutils)[arguments]: Rewrite as G-expressions.
2022-01-05gnu: moreutils: Update to 0.67.Tobias Geerinckx-Rice
* gnu/packages/moreutils.scm (moreutils): Update to 0.67.
2022-01-05gnu: nbd: Update to 3.23.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (nbd): Update to 3.23.
2022-01-05gnu: itcl: Use G-expressions.Tobias Geerinckx-Rice
* gnu/packages/tcl.scm (itcl)[arguments]: Rewrite as G-expressions.
2022-01-05gnu: itcl: Update to 4.2.2.Tobias Geerinckx-Rice
* gnu/packages/tcl.scm (itcl): Update to 4.2.2.
2022-01-05gnu: linuxdcpp: Reanimate.Tobias Geerinckx-Rice
* gnu/packages/direct-connect.scm (linuxdcpp)[source]: Add patch and snippet to fix build. * gnu/packages/patches/linuxdcpp-openssl-1.1.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2022-01-05gnu: rinutils: Respect #:tests?Tobias Geerinckx-Rice
* gnu/packages/games.scm (rinutils)[arguments]: Respect #:tests? in 'check.
2022-01-04guix hash: Allow '--exclude-vcs' option using 'git' serializer.zimoun
* guix/scripts/hash.scm (git-hash): Use '#:select?' with 'git-hash-directory'. * tests/guix-hash.sh: Adjust accordingly. Signed-off-by: Timothy Sample <samplet@ngyro.com>
2022-01-05gnu: Add fcrackzip.Ricardo Wurmus
* gnu/packages/compression.scm (fcrackzip): New variable.
2022-01-04gnu: emacs-goto-chg: Update to 1.7.4.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-goto-chg): Update to 1.7.4.
2022-01-04gnu: Add r-varhandle.Ricardo Wurmus
* gnu/packages/cran.scm (r-varhandle): New variable.
2022-01-04gnu: snap: Update to 7.0.3.Nicolas Goaziou
* gnu/packages/education.scm (snap): Update to 7.0.3.
2022-01-04gnu: r-archr: Update to 1.0.1-1.92ab814.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-archr): Update to 1.0.1-1.92ab814.
2022-01-04gnu: asymptote: Update to 2.74.Nicolas Goaziou
* gnu/packages/plotutils.scm (asymptote): Update to 2.74. [native-inputs]: Add autoconf, automake, boost, rapidjson, texlive-hyperref, texlive-latex-media9, texlive-latex-ocgx2. [inputs]: Add libtirpc. [arguments]<#:configure-flags>: Use gexps. <#:phases>: Fix more include statements. Add phase to prevent hard-coding tirpc include directory. Also force boostrapping. Remove trailing #T.
2022-01-04gnu: Add mbed-tools.Mathieu Othacehe
* gnu/packages/embedded.scm (mbed-tools): New variable.
2022-01-04gnu: Add python-pdoc3.Mathieu Othacehe
* gnu/packages/patches/python-pdoc3-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/local.mk (python-pdoc3): New variable.
2022-01-04gnu: stlink: Update the uri.Mathieu Othacehe
* gnu/packages/embedded.scm (stlink)[origin]: Update it.
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