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2016-08-03gnu: Add discrover....* gnu/packages/bioinformatics.scm (discrover): New variable. Ricardo Wurmus
2016-08-03Rename references to (gnu packages tcsh)....* gnu/packages/algebra.scm, gnu/packages/boost.scm, gnu/packages/maths.scm, gnu/packages/tex.scm, gnu/packages/vim.scm: Change broken references to module (gnu packages tcsh) to (gnu packages shells). ng0
2016-08-03gnu: fxtract: Restrict to x86_64-linux....* gnu/packages/bioinformatics.scm (fxtract)[supported-systems]: Restrict to x86_64-linux. Ben Woodcroft
2016-08-03gnu: python-bz2file: Disable tests....* gnu/packages/python.scm (python-bz2file)[arguments]: Disable tests. (python2-bz2file)[arguments]: New field. Ben Woodcroft
2016-08-03gnu: zsh: Move to shells.scm....* gnu/packages/zsh.scm (zsh): Move from here ... * gnu/packages/shells.scm (zsh): ... to here. * gnu/packages/zsh.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove zsh.scm. Tobias Geerinckx-Rice
2016-08-03gnu: tcsh: Move to shells.scm....* gnu/packages/tcsh.scm (tcsh): Move from here ... * gnu/packages/shells.scm (tcsh): ... to here. * gnu/packages/tcsh.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove tcsh.scm. Tobias Geerinckx-Rice
2016-08-03gnu: rc: Move to shells.scm....* gnu/packages/rc.scm (rc): Move from here ... * gnu/packages/shells.scm (rc): ... to here. * gnu/packages/rc.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove rc.scm. Tobias Geerinckx-Rice
2016-08-03gnu: fish: Move to shells.scm....* gnu/packages/fish.scm (fish): Move from here ... * gnu/packages/shells.scm (fish): ... to here. * gnu/packages/fish.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Remove fish.scm. Tobias Geerinckx-Rice
2016-08-03gnu: Add dash....* gnu/packages/shells.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Register it. Tobias Geerinckx-Rice
2016-08-03Update NEWS.Ludovic Courtès
2016-08-03mapped-devices: raid-device-mapping: Avoid non-top-level 'use-modules'....Fixes <http://bugs.gnu.org/24135>. Reported by myglc2 <myglc2@gmail.com>. * gnu/system/mapped-devices.scm (open-raid-device): Avoid non-top-level 'use-modules' form. Ludovic Courtès
2016-08-02guix system: Fix the Shepherd error handling fix....This is a followup to aa1e73a996ad170fecac848f203528aeb3d2173e. * guix/scripts/system.scm (with-shepherd-error-handling): Return two values when an exception is caught. Ludovic Courtès
2016-08-02build: Add missing procps patch to the distribution....The patch was added to gnu/local.mk in d46123aade7bc5226004eb46ee1084dc84f2b30a and inadvertently removed in a subsequent merge. * gnu/local.mk (dist_patch_DATA): Add procps-non-linux.patch. Ludovic Courtès
2016-08-02guix system: Properly report Shepherd errors when upgrading services....Fixes regression introduced in 8bf92e3904cb656d4c2160fc8befebaf21a65492. Reported by myglc2 <myglc2@gmail.com> in <http://bugs.gnu.org/24135>. * guix/scripts/system.scm (with-shepherd-error-handling): Rename 'body' to 'mbody'. Expand to a monadic procedure that runs MBODY. Ludovic Courtès
2016-08-02doc: Clarify distinction between "service" and "Shepherd service"....* doc/guix.texi (Services): Distinguish "service" and "Shepherd service". Add xref to "Shepherd Services". Ludovic Courtès
2016-08-02doc: Fix typo....* doc/guix.texi (Locales): Add missing 'of'. Ludovic Courtès
2016-08-02gnu: python-atomicwrites: Update to 1.1.0....* gnu/packages/python.scm (python-atomicwrites, python2-atomicwrites): Update to 1.1.0. Leo Famulari
2016-08-02gnu: Add Seren....* gnu/packages/telephony.scm (seren): New variable. Signed-off-by: Alex Kost <alezost@gmail.com> Francesco Frassinelli
2016-08-02gnu: Add Elixir....* gnu/packages/elixir.scm: New file. * gnu/packages/patches/elixir-disable-failing-tests.patch: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add module. (dist_patch_DATA): Add patch. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Pjotr Prins
2016-08-02gnu: libressl: Update to 2.4.2....* gnu/packages/tls.scm (libressl): Update to 2.4.2. Leo Famulari
2016-08-02system: Define 'GUIX_LOCPATH' to work around 'glibc' package defect....Our 'glibc' package currently ignores /run/current-system/locale, although the intent is to look for locales in that directory. * gnu/packages/base.scm (glibc/linux): Add comment about /run/current-system/locale being ignored. * gnu/system.scm (operating-system-environment-variables): Add 'GUIX_LOCPATH'. * gnu/tests/base.scm (run-basic-test): Add "locale" test. Ludovic Courtès
2016-08-02tests: Make sure threads use separate output ports....* tests/publish.scm (with-separate-output-ports): New macro. <top level>: Use it when spawning new thread. ("/*.narinfo with compression"): Likewise. Ludovic Courtès
2016-08-02tests: Work around Guile bug with unbuffered custom binary input ports....Reported by Chris Marusich <cmmarusich@gmail.com> at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=24060#19> * tests/publish.scm (http-get-port): Remove 'setvbuf' call for the response port. Ludovic Courtès
2016-08-02gnu: Add perl-log-any-adapter-log4perl....* gnu/packages/perl.scm (perl-log-any-adapter-log4perl): New variable. Alex Sassmannshausen
2016-08-02gnu: Add perl-log-log4perl....* gnu/packages/perl.scm (perl-log-log4perl): New variable. Alex Sassmannshausen
2016-08-02gnu: Add perl-log-any....* gnu/packages/perl.scm (perl-log-any): New variable. Alex Sassmannshausen
2016-08-02gnu: Add emacs-visual-fill-column....* gnu/packages/emacs.scm (emacs-visual-fill-column): New variable. Ricardo Wurmus
2016-08-02gnu: ccl: Update to 1.11....* gnu/packages/lisp.scm (ccl): Update to 1.11. Signed-off-by: 宋文武 <iyzsong@gmail.com> Christopher W. Carpenter
2016-08-02gnu: r-variantannotation: Update to 1.18.6....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.6. Ricardo Wurmus
2016-08-02gnu: r-genomationdata: Update to 1.4.2....* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.4.2. Ricardo Wurmus
2016-08-02gnu: kde-frameworks: Fix version numbers....Fixes a regression introduced in d26e2b9f306a1170d46f7c860c81840d9d600161. * gnu/packages/kde-frameworks.scm (kwindowsystem, oxygen-icons): Set to "5.21.0". Ludovic Courtès
2016-08-02gnu: extra-cmake-modules: Add proper 'version'....Fixes a regression introduced in d26e2b9f306a1170d46f7c860c81840d9d600161. * gnu/packages/kde-frameworks.scm (extra-cmake-modules)[version]: Set to "5.21.0". Ludovic Courtès
2016-08-02doc: Add "Installing GuixSD in a VM" node....* doc/guix.texi (Installing GuixSD in a VM): New node. (USB Stick Installation): Refer to it. (System Installation): Mention "GuixSD". Co-authored-by: Ludovic Courtès <ludo@gnu.org> Vincent Legoll
2016-08-02mapped-devices: Bail out when RAID sources don't show up....* gnu/system/mapped-devices.scm (open-raid-device): Bail out after 20 loop iterations. Ludovic Courtès
2016-08-02mapped-devices: Make RAID device opening message clearer....* gnu/system/mapped-devices.scm (open-raid-device): Rename 'source' to 'sources'. Make 'waiting' message more informative. (close-raid-device): Rename 'source' to 'sources'. Ludovic Courtès
2016-08-02mapped-devices: Do not always use (gnu build file-systems)....Fixes <http://bugs.gnu.org/24129>. Reported by myglc2 <myglc2@gmail.com>. * gnu/system/mapped-devices.scm (device-mapping-service-type): Remove 'modules' field from 'shepherd-service' form. (open-luks-device): Add 'use-modules' form. Ludovic Courtès
2016-08-02gnu: kde-frameworks: Remove kde-frameworks-version....* gnu/packages/kde-frameworks (kde-frameworks-version): Delete variable. (kwindowsystem)[version]: Replace kde-frameworks-version with version string. (oxygen-icons)[version]: Replace kde-frameworks-version with version string. David Craven
2016-08-02lint: 'inputs-should-be-native' checks for extra-cmake-modules and qttools....* guix/scripts/lint.scm (check-inputs-should-be-native): Warn when extra-cmake-modules or qttools isn't a native-input. David Craven
2016-08-02gnu-maintenance: Add KDE updater....* guix/gnu-maintenance.scm (kde-package?, latest-kde-release): New private functions. (%kde-updater): New public variable. * guix/scripts/refresh.scm (list-updaters): Add %kde-updater. * doc/guix.texi (Invoking guix refresh): Mention the new updater. David Craven
2016-08-02download: Add KDE mirrors....* guix/download.scm (%mirrors)[kde]: Add kde mirrors. David Craven
2016-08-02gnu: network-manager: Propagate GLIB....* gnu/packages/gnome.scm (network-manager)[propagated-inputs]: Add glib. David Craven
2016-08-02gnu: powwow: Use HTTPS download....* gnu/packages/games.scm (powwow)[source]: Use HTTPS URL. Andreas Enge
2016-08-01gnu: vdirsyncer: Update to 0.11.3....* gnu/packages/dav.scm (vdirsyncer): Update to 0.11.3. Leo Famulari
2016-08-01gnu: Add supertux....* gnu/packages/games.scm (supertux): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> nee
2016-08-01gnu: htop: Update to 2.0.2....* gnu/packages/admin.scm (htop): Update to 2.0.2. Leo Famulari
2016-08-01Merge branch 'core-updates'Ludovic Courtès
2016-08-01gnu: openssh: Update to 7.3p1....* gnu/packages/ssh.scm (openssh): Update to 7.3p1. [source]: Remove patches. * gnu/packages/patches/openssh-CVE-2015-8325.patch, gnu/packages/patches/openssh-CVE-2016-6210-1.patch, gnu/packages/patches/openssh-CVE-2016-6210-2.patch, gnu/packages/patches/openssh-CVE-2016-6210-3.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Mark H Weaver
2016-08-01gnu: red-eclipse: Replace string with version number variable....* gnu/packages/games.scm (red-eclipse)[phases]: Replace it. Kei Kebreau
2016-08-01publish: Do not compress already-compressed files....* guix/scripts/publish.scm (narinfo-string): Force %NO-COMPRESSION when STORE-PATH matches 'compressed-file?'. * guix/utils.scm (compressed-file?): New procedure. * tests/publish.scm ("/*.narinfo for a compressed file"): New test. Ludovic Courtès
2016-08-01gnu: red-eclipse: Add example server configuration file to config...directory. * gnu/packages/games.scm (red-eclipse)[phases]: Add server configuration file. Kei Kebreau
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