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2020-06-11Merge branch 'master' into stagingMarius Bakke
2020-06-11gnu: Add exercism and dependencies....* gnu/packages/education.scm (exercism): New variable. * gnu/packages/patches/exercism-disable-self-update.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/golang.scm (go-github-com-spf13-afero) (go-github-com-spf13-cast) (go-github-com-spf13-cobra) (go-github-com-spf13-jwalterweatherman) (go-github-com-spf13-viper) (go-github-com-fsnotify-fsnotify) (go-github-com-magiconair-properties) (go-github-com-pelletier-go-toml) (go-github-com-subosito-gotenv) (go-gopkg-in-ini-v1) (go-github-com-mitchellh-mapstructure): New variables. Jakub Kądziołka
2020-06-11gnu: linux-libre: Update to 5.4.46....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.46. (linux-libre-5.4-pristine-source): Update hash. Mark H Weaver
2020-06-11gnu: linux-libre@5.7: Update to 5.7.2....* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.128. (linux-libre-5.7-pristine-source): Update hash. Mark H Weaver
2020-06-11gnu: linux-libre@5.6: Remove....Users of linux-libre-5.6 should migrate to version 5.7. * gnu/packages/linux.scm (deblob-scripts-5.6, linux-libre-5.6-version) (linux-libre-5.6-pristine-source, linux-libre-5.6-source) (linux-libre-headers-5.6, linux-libre-arm-generic-5.6) (linux-libre-arm64-generic-5.6): Remove variables. Mark H Weaver
2020-06-11gnu: linux-libre@4.19: Update to 4.19.128....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.128. (linux-libre-4.19-pristine-source): Update hash. Mark H Weaver
2020-06-11gnu: linux-libre@4.14: Update to 4.14.184....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.184. (linux-libre-4.14-pristine-source): Update hash. Mark H Weaver
2020-06-11gnu: linux-libre@4.9: Update to 4.9.227....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.227. (linux-libre-4.9-pristine-source): Update hash. Mark H Weaver
2020-06-11gnu: linux-libre@4.4: Update to 4.4.227....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.227. (linux-libre-4.4-pristine-source): Update hash. Mark H Weaver
2020-06-11gnu: adns: Update to 1.6.0....* gnu/packages/adns.scm (adns): Update to 1.6.0. [source]: Use https. [native-inputs]: Add m4. Efraim Flashner
2020-06-11gnu: subversion: Update to 1.14.0....* gnu/packages/version-control.scm (subversion): Update to 1.14.0. [source]: Update source URI. Efraim Flashner
2020-06-11gnu: nghttp2: Replace with version 1.41 [fixes CVE-2020-11080]....* gnu/packages/web.scm (nghttp2-1.41): New variable. (nghttp2)[replacement]: New field. Ludovic Courtès
2020-06-11packages: 'package-grafts' returns grafts for all the relevant outputs....Fixes <https://bugs.gnu.org/41796>. Reported by Jakub Kądziołka <kuba@kadziolka.net>. * guix/packages.scm (input-graft): Add 'output' parameter and honor it. Add OUTPUT to the cache key. (input-cross-graft): Likewise. (fold-bag-dependencies): Operate on inputs instead of nodes. Turn VISITED into a vhash instead of a set. Pass PROC HEAD and OUTPUT instead of just HEAD. (bag-grafts): Adjust accordingly. * tests/packages.scm ("package-grafts, dependency on several outputs"): New test. Ludovic Courtès
2020-06-11gnu: r-with-tests, r-minimal: Update to 4.0.1....* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.1. Ricardo Wurmus
2020-06-11gnu: r-brms: Update to 2.13.0....* gnu/packages/cran.scm (r-brms): Update to 2.13.0. Ricardo Wurmus
2020-06-11gnu: r-crochet: Update to 2.3.0....* gnu/packages/cran.scm (r-crochet): Update to 2.3.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-11gnu: r-openmx: Update to 2.17.4....* gnu/packages/cran.scm (r-openmx): Update to 2.17.4. Ricardo Wurmus
2020-06-11gnu: r-stanheaders: Update to 2.21.0-5....* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-5. [propagated-inputs]: Add r-rcppeigen and r-rcppparallel. Ricardo Wurmus
2020-06-11gnu: r-semtools: Update to 0.5-3....* gnu/packages/cran.scm (r-semtools): Update to 0.5-3. Ricardo Wurmus
2020-06-11gnu: r-sem: Update to 3.1-11....* gnu/packages/cran.scm (r-sem): Update to 3.1-11. Ricardo Wurmus
2020-06-11gnu: r-emplik: Update to 1.1-1....* gnu/packages/cran.scm (r-emplik): Update to 1.1-1. Ricardo Wurmus
2020-06-11gnu: r-rsvg: Update to 2.1....* gnu/packages/cran.scm (r-rsvg): Update to 2.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-11gnu: r-actuar: Update to 3.0-0....* gnu/packages/cran.scm (r-actuar): Update to 3.0-0. Ricardo Wurmus
2020-06-11gnu: r-gdina: Update to 2.8.0....* gnu/packages/cran.scm (r-gdina): Update to 2.8.0. Ricardo Wurmus
2020-06-11gnu: r-seewave: Update to 2.1.6....* gnu/packages/cran.scm (r-seewave): Update to 2.1.6. [inputs]: Add libsndfile. Ricardo Wurmus
2020-06-11gnu: r-elasticnet: Update to 1.3....* gnu/packages/cran.scm (r-elasticnet): Update to 1.3. Ricardo Wurmus
2020-06-11gnu: r-showtext: Update to 0.8-1....* gnu/packages/cran.scm (r-showtext): Update to 0.8-1. Ricardo Wurmus
2020-06-11gnu: r-showtextdb: Update to 3.0....* gnu/packages/cran.scm (r-showtextdb): Update to 3.0. Ricardo Wurmus
2020-06-11gnu: r-abcrlda: Update to 1.0.3....* gnu/packages/cran.scm (r-abcrlda): Update to 1.0.3. Ricardo Wurmus
2020-06-11gnu: r-rgdal: Update to 1.5-10....* gnu/packages/cran.scm (r-rgdal): Update to 1.5-10. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-11gnu: r-parameters: Update to 0.8.0....* gnu/packages/cran.scm (r-parameters): Update to 0.8.0. Ricardo Wurmus
2020-06-11gnu: r-systemfonts: Update to 0.2.3....* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.3. Ricardo Wurmus
2020-06-11gnu: r-rhpcblasctl: Update to 0.20-137....* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-137. Ricardo Wurmus
2020-06-11gnu: r-ggraph: Update to 2.0.3....* gnu/packages/cran.scm (r-ggraph): Update to 2.0.3. Ricardo Wurmus
2020-06-11gnu: r-europepmc: Update to 0.4....* gnu/packages/cran.scm (r-europepmc): Update to 0.4. [propagated-inputs]: Add r-rlang, r-tibble, and r-tidyr. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-11gnu: r-msigdbr: Update to 7.1.1....* gnu/packages/cran.scm (r-msigdbr): Update to 7.1.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-11gnu: r-bookdown: Update to 0.19....* gnu/packages/cran.scm (r-bookdown): Update to 0.19. Ricardo Wurmus
2020-06-11gnu: r-rms: Update to 6.0-0....* gnu/packages/cran.scm (r-rms): Update to 6.0-0. [propagated-inputs]: Add r-cluster, r-digest, and r-mass. Ricardo Wurmus
2020-06-11gnu: r-polspline: Update to 1.1.19....* gnu/packages/cran.scm (r-polspline): Update to 1.1.19. Ricardo Wurmus
2020-06-11gnu: r-lemon: Update to 0.4.5....* gnu/packages/cran.scm (r-lemon): Update to 0.4.5. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-11gnu: r-picante: Update to 1.8.2....* gnu/packages/cran.scm (r-picante): Update to 1.8.2. Ricardo Wurmus
2020-06-11gnu: r-lavaan: Update to 0.6-6....* gnu/packages/cran.scm (r-lavaan): Update to 0.6-6. Ricardo Wurmus
2020-06-11gnu: r-cmprsk: Update to 2.2-10....* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-10. Ricardo Wurmus
2020-06-11gnu: r-gmp: Update to 0.6-0....* gnu/packages/cran.scm (r-gmp): Update to 0.6-0. Ricardo Wurmus
2020-06-11gnu: r-bigrquery: Update to 1.3.1....* gnu/packages/cran.scm (r-bigrquery): Update to 1.3.1. Ricardo Wurmus
2020-06-11gnu: r-iso: Update to 0.0-18.1....* gnu/packages/cran.scm (r-iso): Update to 0.0-18.1. Ricardo Wurmus
2020-06-11gnu: r-sjplot: Update to 2.8.4....* gnu/packages/cran.scm (r-sjplot): Update to 2.8.4. Ricardo Wurmus
2020-06-11gnu: r-effectsize: Update to 0.3.1....* gnu/packages/cran.scm (r-effectsize): Update to 0.3.1. Ricardo Wurmus
2020-06-11gnu: r-bayesplot: Update to 1.7.2....* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.2. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-11gnu: r-emmeans: Update to 1.4.7....* gnu/packages/cran.scm (r-emmeans): Update to 1.4.7. Ricardo Wurmus
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