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2018-04-21gnu: r-selectr: Update to 0.4-1....* gnu/packages/cran.scm (r-selectr): Update to 0.4-1. [propagated-inputs]: Add r-r6. Ricardo Wurmus
2018-04-21gnu: r-scran: Update to 1.6.9....* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.9. Ricardo Wurmus
2018-04-21gnu: r-hitc: Update to 1.22.1....* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.22.1. Ricardo Wurmus
2018-04-21gnu: r-ldblock: Update to 1.8.1....* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.8.1. Ricardo Wurmus
2018-04-21gnu: r-erma: Update to 0.10.1....* gnu/packages/bioinformatics.scm (r-erma): Update to 0.10.1. Ricardo Wurmus
2018-04-21gnu: r-gprofiler: Update to 0.6.6....* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.6. Ricardo Wurmus
2018-04-21gnu: r-ggbio: Update to 1.26.1....* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.26.1. Ricardo Wurmus
2018-04-21gnu: r-genomicalignments: Update to 1.14.2....* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.2. Ricardo Wurmus
2018-04-21gnu: r-dexseq: Update to 1.24.4....* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.4. Ricardo Wurmus
2018-04-21gnu: r-vegan: Update to 2.5-1....* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-1. [propagated-inputs]: Add r-knitr. Ricardo Wurmus
2018-04-21gnu: r-mapproj: Update to 1.2.6....* gnu/packages/geo.scm (r-mapproj): Update to 1.2.6. Ricardo Wurmus
2018-04-21gnu: r-maps: Update to 3.3.0....* gnu/packages/geo.scm (r-maps): Update to 3.3.0. Ricardo Wurmus
2018-04-21gnu: r-igraph: Update to 1.2.1....* gnu/packages/graph.scm (r-igraph): Update to 1.2.1. [inputs]: Add glpk and zlib. [propagated-inputs]: Remove r-irlba. Ricardo Wurmus
2018-04-21gnu: r-subplex: Update to 1.5-4....* gnu/packages/maths.scm (r-subplex): Update to 1.5-4. Ricardo Wurmus
2018-04-21gnu: r-shinydashboard: Update to 0.7.0....* gnu/packages/web.scm (r-shinydashboard): Update to 0.7.0. Ricardo Wurmus
2018-04-21gnu: r-htmlwidgets: Update to 1.2....* gnu/packages/web.scm (r-htmlwidgets): Update to 1.2. Ricardo Wurmus
2018-04-21gnu: r-lme4: Update to 1.1-17....* gnu/packages/statistics.scm (r-lme4): Update to 1.1-17. Ricardo Wurmus
2018-04-21gnu: r-futile-options: Update to 1.0.1....* gnu/packages/statistics.scm (r-futile-options): Update to 1.0.1. Ricardo Wurmus
2018-04-21gnu: r-xml: Update to ....* gnu/packages/statistics.scm (r-xml): Update to . Ricardo Wurmus
2018-04-21gnu: r-rsqlite: Update to 2.1.0....* gnu/packages/statistics.scm (r-rsqlite): Update to 2.1.0. Ricardo Wurmus
2018-04-21gnu: r-survival: Update to 2.42-3....* gnu/packages/statistics.scm (r-survival): Update to 2.42-3. Ricardo Wurmus
2018-04-21gnu: r-nlme: Update to 3.1-137....* gnu/packages/statistics.scm (r-nlme): Update to 3.1-137. Ricardo Wurmus
2018-04-21gnu: r-cluster: Update to 2.0.7-1....* gnu/packages/statistics.scm (r-cluster): Update to 2.0.7-1. Ricardo Wurmus
2018-04-21gnu: r-minimal: Update to 3.4.4....* gnu/packages/statistics.scm (r-minimal): Update to 3.4.4. Ricardo Wurmus
2018-04-21gnu: spindle: Limit supported systems....* gnu/packages/admin.scm (spindle)[supported-system]: New field. Efraim Flashner
2018-04-21gnu: freefall: Fix compilation error....* gnu/packages/linux.scm (freefall)[arguments]: Add make-flag to set CC=gcc. Efraim Flashner
2018-04-21gnu: python-onetimepass: Make python-six a propagated input....* gnu/packages/python.scm (python-onetimepass)[inputs]: Move python-six from here... [propagated-inputs]: ...to here. Tomáš Čech
2018-04-21gnu: go-github-com-vitrun-qart-qr: Remove duplicate 'description' field....* gnu/packages/syncthing.scm (go-github-com-vitrun-qart-qr)[description]: Remove duplicate 'description' field. Mark H Weaver
2018-04-21gnu: uget: Remove duplicate 'native-inputs' field....* gnu/packages/bittorrent.scm (uget)[native-inputs]: Remove duplicate field initializer. Mark H Weaver
2018-04-21gnu: linux-libre@4.9: Update to 4.9.95....* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.95. Mark H Weaver
2018-04-21gnu: Add osc.... * gnu/packages/build-tools.scm (osc): New variable. Tomáš Čech
2018-04-21gnu: Add python-m2crypto, python2-m2crypto....* gnu/packages/python-crypto.scm (python-m2crypto): New variable. (python2-m2crypto): New variable. Tomáš Čech
2018-04-21gnu: Add python2-urlgrabber....* gnu/packages/python-web (python2-urlgrabber): New variable. Tomáš Čech
2018-04-21gnu: Add python-onetimepass....* gnu/packages/python.scm (python-onetimepass): New variable. Tomáš Čech
2018-04-21gnu: perl: Hack the replacement perl to think it is version 5.26.1....Fixes <https://bugs.gnu.org/31216>. This is a followup to commits 217b8c2e061a5b637e198f1ed9960d4abe2b0a46, 44b98b00026e62766620dbc4330a305282d61069, and 35fbe194c3da264859a5addc661b9fbc2dc8ecc7. Complications arise when grafting perl unless the version of the replacement perl matches that of the original. So, here we add 'perl/fixed', which is built from the perl-5.26.2 source but hacked to believe it is version 5.26.1. * gnu/packages/perl.scm (perl)[replacement]: Use perl/fixed, not perl-5.26.2. (perl-5.26.2): Remove compatibility symlinks. (perl/fixed): New variable. Mark H Weaver
2018-04-20gnu: perl: Add more compatibility symlinks to the replacement perl....Fixes <https://bugs.gnu.org/31216>. Reported by Julien Lepiller <julien@lepiller.eu>. * gnu/packages/perl.scm (perl-5.26.2)[arguments]: Rename the 'workaround-grafting-version-bug' phase to 'install-compatibility-symlinks'. Install symlinks in $out/lib/perl5/site_perl/5.26.1 and $out/bin/perl5.26.1, in addition to $out/lib/perl5/5.26.1. Simplify the code a bit. Mark H Weaver
2018-04-21gnu: texlive-bin: Patch texlua shebangs....* gnu/packages/tex.scm (texlive-bin)[arguments]: Patch texlua shebangs in postint phase. Arun Isaac
2018-04-21gnu: texlive-bin: Use ghostscript executable "gs" in ps2eps....* gnu/packages/tex.scm (texlive-bin)[arguments]: Add fix-unix-detection phase. Replace system* with invoke in postint phase. Arun Isaac
2018-04-20gnu: emacs-org, emacs-org-contrib: Update version....* gnu/packages/emacs.scm (emacs-org): Update to 9.1.10. (emacs-org-contrib): Update to 20180416. Nicolas Goaziou
2018-04-20gnu: emacs-sx: Fix byte compilation....The package would fail building when attempting to create a cache directory. This has been fixed upstream but not in a tagged release. * gnu/packages/emacs.scm (emacs-sx): Update to latest git version. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Maxim Cournoyer
2018-04-20gnu: emacs-esxml: Fix byte compilation....* gnu/packages/emacs.scm (emacs-esxml)[arguments]: Add fix-sources phase. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Maxim Cournoyer
2018-04-20gnu: Add emacs-kv....* gnu/packages/emacs.scm (emacs-kv): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Maxim Cournoyer
2018-04-20gnu: lvm2: Enable pkg-config files generation....* gnu/packages/linux.scm (lvm2)[arguments]: Enable pkg-config files generation via configure flag. Tomáš Čech
2018-04-20gnu: Add go-golang-org-x-crypto-ssh-terminal....* gnu/packages/golang.scm (go-golang-org-x-crypto-ssh-terminal): New variable. Tomáš Čech
2018-04-20gnu: emacs-realgud: Update to 1.4.5....* gnu/packages/emacs.scm (emacs-realgud): Update to 1.4.5. Arun Isaac
2018-04-20gnu: emacs-realgud: Fix autogen.sh after EMACSLOADPATH is set....* gnu/packages/emacs.scm (emacs-realgud)[arguments]: Move the fix-autogen-script phase to after the set-emacs-load-path phase. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Maxim Cournoyer
2018-04-19gnu: linux-libre: Update to 4.16.3....* gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.3. (%linux-libre-hash): Update hash. Mark H Weaver
2018-04-19gnu: linux-libre@4.14: Update to 4.14.35....* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.35. (%linux-libre-4.14-hash): Update hash. Mark H Weaver
2018-04-20gnu: emacs-deferred: Enable tests....* gnu/packages/emacs.scm (emacs-deferred)[arguments]: Add fix-makefile phase. Set #:test-command, and enable tests. [native-inputs]: Add emacs-ert-expectations, emacs-undercover and ert-runner. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Maxim Cournoyer
2018-04-20gnu: emacs-memoize: Update to 1.1....* gnu/packages/emacs.scm (emacs-memoize): Update to 1.1. Re-indent. [source]: Switch to release tarball. [arguments]: Remove "-l" "memoize.el" from #:test-command. Arun Isaac
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