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2020-03-13gnu: salmon: Adjust for C_INCLUDE_PATH changes.•••* gnu/packages/bioinformatics.scm (salmon)[arguments]: Append Eigen headers to C_INCLUDE_PATH instead of CPATH. Marius Bakke
2020-03-13gnu: OpenLDAP: Remove unused input.•••* gnu/packages/openldap.scm (openldap)[inputs]: Remove ICU4C. Marius Bakke
2020-03-13gnu: jemalloc: Install scripts to separate output.•••* gnu/packages/jemalloc.scm (jemalloc)[outputs]: New field. Marius Bakke
2020-03-13gnu: ncurses: Prevent binutils reference.•••This fixes a regression introduces in 717c433c46e8e9fc77b796e485092e2cccee336a where ncurses would needlessly depend on binutils on runtime. * gnu/packages/ncurses.scm (ncurses)[arguments]: Add "cf_cv_ld_searchpath" in #:configure-flags. Marius Bakke
2020-03-10gnu: Remove guile@2.2.6.•••* gnu/packages/patches/guile-finalization-crash.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/guile.scm (guile-2.2)[source](patches): Remove 'guile-finalization-crash.patch'. (guile-2.2.7): Remove variable. (guile-2.2/bug-fix): Point to GUILE-2.2. * gnu/packages/admin.scm (shepherd)[native-inputs, inputs]: Use GUILE-2.2 instead of GUILE-2.2.7. Marius Bakke
2020-03-10Merge branch 'master' into core-updatesMarius Bakke
2020-03-10doc: Use HTTPS for external links.•••* doc/contributing.texi (14.1 Building from Git, 14.3 The Perfect Setup, 14.4.1 Software Freedom, 14.4.4 Synopses and Descriptions, 14.5.4 Formatting Code): Use HTTPS for @uref{}s and @url{}s that support it. * doc/fdl-1.3.texi (Appendix A GNU Free Documentation License): Use HTTPS for @uref{}s and @url{}s that support it. * doc/guix.texi (6.3 Build Systems, 8.8.4 Networking Services, 8.8.8 Sound Services, 8.8.16 Web Services, 8.11 Name Service Switch, 12.2 Preparing to Use the Bootstrap Binaries); Use HTTPS for @uref{}s and @url{}s that support it. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Vitaliy Shatrov
2020-03-10gnu: mercurial: Enable more tests.•••* gnu/packages/version-control.scm (mercurial)[arguments]: Add phase 'patch-tests'. Do not remove patched tests in the 'check' phase. Marius Bakke
2020-03-10gnu: guix: Update to 0984481.•••* gnu/packages/package-management.scm (guix): Update to 0984481. Ludovic Courtès
2020-03-10gnu: icecat: Update to 68.6.0-guix0-preview1 [security fixes].•••Includes fixes for CVE-2019-20503, CVE-2020-6805, CVE-2020-6806, CVE-2020-6807, CVE-2020-6811, CVE-2020-6812, and CVE-2020-6814. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. * gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version. Mark H Weaver
2020-03-10vm: Compute UUIDs truly deterministically.•••This is a followup to 1540075c790dfaeff52c93392f2fc63b9e23b77e. The mistake had no effect on prior Guile versions but it's visible since Guile 3.0.1 and the fix for <https://bugs.gnu.org/39634>. * gnu/system/vm.scm (operating-system-uuid): Hash a list of 'file-system-digest' values, not the 'file-system-type' procedure. Ludovic Courtès
2020-03-10gnu: guile-next: Update to 3.0.1 with bug-fix for crash.•••* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1 with "guile-3.0-crash.patch". * gnu/packages/patches/guile-3.0-crash.patch: New file. * gnu/local.mk (dist_patch_DATA): Use it. Ludovic Courtès
2020-03-10gnu: emacs-xr: Update to 1.18.•••* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.18. Nicolas Goaziou
2020-03-10gnu: Add r-ppcor.•••* gnu/packages/cran.scm (r-ppcor): New variable. Ricardo Wurmus
2020-03-10gnu: python: Fix cross-compilation.•••This is a follow-up of 89da127035737bdf922bc566970c5506c2e01b00. * gnu/packages/patches/python-3-search-paths.patch: Use CROSS_C_INCLUDE_PATH instead of CROSS_CPATH. Mathieu Othacehe
2020-03-10gnu: monero-gui: Update to 0.15.0.4.•••* gnu/packages/finance.scm (monero-gui): Update to 0.15.0.4. Guillaume Le Vaillant
2020-03-10gnu: monero: Update to 0.15.0.5.•••* gnu/packages/finance.scm (monero): Update to 0.15.0.5. Guillaume Le Vaillant
2020-03-10gnu: mars: Fix home page.•••* gnu/packages/games.scm (mars)[home-page]: Use working domain & HTTPS. Tobias Geerinckx-Rice
2020-03-10gnu: ode: Use HTTPS home page.•••* gnu/packages/game-development.scm (ode)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-10gnu: xmobar: Use HTTPS home page.•••* gnu/packages/wm.scm (xmobar)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-10gnu: gitolite: Use HTTPS home page.•••* gnu/packages/version-control.scm (gitolite)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-10gnu: font-dosis: Use archive.org'd URIs.•••* gnu/packages/fonts.scm (font-dosis)[source, home-page]: Use snapshots. Tobias Geerinckx-Rice
2020-03-10gnu: python-virtualenv: Propagate inputs.•••* gnu/packages/python-xyz.scm (python-virtualenv)[inputs]: Make… [propagated-inputs]: …this. Tobias Geerinckx-Rice
2020-03-10gnu: guile3.0-guix: Fix cross-compilation.•••* gnu/packages/package-management.scm (guile3.0-guix)[native-inputs]: Remove all Guile 2.X libraries and replace them by their 3.0 counterpart. Mathieu Othacehe
2020-03-10gnu: git-annex: Update to 8.20200309.•••* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20200309. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Kyle Meyer
2020-03-10gnu: mumble: Disable statistic gathering by default.•••Fixes <https://bugs.gnu.org/25201> * gnu/packages/telephone.scm (mumble)[arguments]: Add phase to disable statistic gathering by default. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Michael Rohleder
2020-03-10gnu: r-sparselda: Use HTTPS home page.•••* gnu/packages/cran.scm (r-sparselda)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-10gnu: r-spams: Use HTTPS home page.•••Well, it currently redirects back to HTTP… * gnu/packages/statistics.scm (r-spams)[home-page]: Use ‘HTTPS’. Tobias Geerinckx-Rice
2020-03-10gnu: r-fda: Use HTTPS home page.•••* gnu/packages/cran.scm (r-fda)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-10gnu: r-mcmc: Use HTTPS home page.•••* gnu/packages/cran.scm (r-mcmc)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-10gnu: r-varselrf: Update home page.•••* gnu/packages/cran.scm (r-varselrf)[home-page]: Follow (HTTPS) redirection. Tobias Geerinckx-Rice
2020-03-10gnu: r-knitr: Update home page.•••* gnu/packages/statistics.scm (r-knitr)[home-page]: Follow (HTTPS) redirection. Tobias Geerinckx-Rice
2020-03-10gnu: r-ouch: Use HTTPS home page.•••* gnu/packages/cran.scm (r-ouch)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-10gnu: libinput: Note libinput-minimal inheritance.•••* gnu/packages/freedesktop.scm (libinput): Add a warning comment. Tobias Geerinckx-Rice
2020-03-09gnu: csvkit: Update to 1.0.5.•••* gnu/packages/wireservice.scm (csvkit): Update to 1.0.5. [source]: Remove upstreamed patch. * gnu/packages/patches/csvkit-fix-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2020-03-09gnu: slang: Use HTTPS home page.•••* gnu/packages/slang.scm (slang)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-09gnu: polipo: Use HTTPS home page.•••* gnu/packages/web.scm (polipo)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-09gnu: iperf: Use HTTPS home page.•••* gnu/packages/networking.scm (iperf)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-09gnu: xdotool: Use HTTPS home page.•••* gnu/packages/xdisorg.scm (xdotool)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-09gnu: compface: Update home page.•••* gnu/packages/mail.scm (compface)[home-page]: Follow (HTTPS) redirection. Tobias Geerinckx-Rice
2020-03-09gnu: compface: Don't use NAME in source URI.•••* gnu/packages/mail.scm (compface)[source]: Hard-code NAME. Tobias Geerinckx-Rice
2020-03-09gnu: Use HTTPS for rstudio.github.io home pages.•••* gnu/packages/cran.scm (r-shinydashboard, r-shinythemes, r-dt) [home-page]: Use HTTPS. Tobias Geerinckx-Rice
2020-03-09git-authenticate: Add roelj's new key.•••This is a followup to cc51c03ff867d4633505354819c6d88af88bf919. * build-aux/git-authenticate.scm (%committers): Add roelj's new key. Ludovic Courtès
2020-03-09tests: getmail: Provide a pre-initialized user account password.•••* gnu/tests/mail.scm (%getmail-os): Rewrite so that the "alice" account has a password. (run-getmail-test)[test]("set password for alice"): Remove. This would not work since commit 8b9cad01e9619f53dc5a65892ca6a09ca5de3447 since 'passwd' would no longer be in $PATH. Ludovic Courtès
2020-03-09tests: docker-system: Increase memory requirement.•••The system image would no longer fit in memory, starting from commit 8c7eb58453870f380a077c7cfd8dafa97bb8e13f. * gnu/tests/docker.scm (run-docker-system-test): Set 'memory-size' to 3500. Ludovic Courtès
2020-03-09tests: zabbix: Set 'PATH' before running the scripts.•••This is a followup to 8b9cad01e9619f53dc5a65892ca6a09ca5de3447. * gnu/tests/monitoring.scm (run-zabbix-server-test)[test]: Set 'PATH' in MARIONETTE. Ludovic Courtès
2020-03-09gnu: Add rr.•••* gnu/packages/debug.scm (rr): New variable. Ludovic Courtès
2020-03-09Revert "gnu: libinput: Update to 1.15.3."•••This reverts commit 1fad0b8674cf97a7e102e98ab31fcebe07ae9515. It rebuilds the world through libinput-minimal. Tobias Geerinckx-Rice
2020-03-09gnu: python-sphinxcontrib-websupport: Update to 1.2.0.•••* gnu/packages/sphinx.scm (python-sphinxcontrib-websupport): Update to 1.2.0. Tobias Geerinckx-Rice
2020-03-09gnu: python-sphinxcontrib-serializinghtml: Update to 1.1.4.•••* gnu/packages/sphinx.scm (python-sphinxcontrib-serializinghtml): Update to 1.1.4. Tobias Geerinckx-Rice