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2020-09-15authenticate: Encode strings as ISO-8859-1.Ludovic Courtès
Fixes <https://bugs.gnu.org/43421>. * guix/scripts/authenticate.scm (read-command): Decode strings as ISO-8859-1, not UTF-8. (guix-authenticate)[send-reply]: Encode strings as ISO-8859-1, not UTF-8. * tests/guix-authenticate.sh: Add test.
2020-09-15services: bitlbee: Support libpurple plugins.Ludovic Courtès
* gnu/services/messaging.scm (bitlbee-shepherd-service): Pass PURPLE_PLUGIN_PATH as #:environment-variables.
2020-09-15gnu: sbcl-trivial-clipboard: Update to 20200904.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-trivial-clipboard): Update to 20200904.
2020-09-15gnu: waybar: Fix build.Efraim Flashner
Reported by bdju. * gnu/packages/pretty-print.scm (fmt-6): New variable. * gnu/packages/wm.scm (waybar)[inputs]: Replace fmt with fmt-6.
2020-09-15gnu: emacs-org: Update to 9.4.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.4. (emacs-org-contrib): Update to 20200914.
2020-09-15gnu: roffit: Adjust install phase.Efraim Flashner
* gnu/packages/groff.scm (roffit)[arguments]: Remove make-flags. Remove custom 'pre-install phase. Replace 'install phase to also install manpage.
2020-09-15gnu: roffit: Wrap binary.Efraim Flashner
Fixes <https://debbugs.gnu.org/43306>. * gnu/packages/groff.scm (roffit)[arguments]: Add 'wrap-binary phase to help find perl libraries.
2020-09-15gnu: bsequencer: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/music.scm (bsequencer): Update to 1.8.0.
2020-09-15services: docker: Fix service definition.Oleg Pykhalov
This commit follows a404716d411cf7cd49ff02e3100f0bbf6622d6d5. * gnu/services/docker.scm (docker-configuration)[docker-cli]: New record field. (docker-service-type): Use this. * doc/guix.texi (Miscellaneous Services)[Docker Service]: Document this.
2020-09-14gnu: kdenlive: Change source URL to follow permanent redirection.Prafulla Giri
* gnu/packages/kde.scm (kdenlive)[source]: Change url to follow permanent redirection. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-14gnu: kde: kdenlive: Make breeze theme available at runtime.Prafulla Giri
* gnu/packages/kde.scm (kdenlive): [inputs]: Add breeze. [arguments]: In wrap-program phase, add XDG_DATA_DIRS to include the 'share' sub-directory of the package breeze. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-14gnu: Add ripmime.Sébastien Lerique
* gnu/packages/mail.scm (ripmime): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-14gnu: guix: Update to 846403e.Ludovic Courtès
* gnu/packages/package-management.scm (guix): Update to 846403e.
2020-09-14services: docker: Fix service definition.Efraim Flashner
This is a follow-up to 8422a67dc16af4dd5eb82180463aa7a0b362d5b9. * gnu/services/docker.scm (docker-service-type): Use a composed list for packages in profile-service-type.
2020-09-14gnu: maven-compiler-plugin: Don't use unstable tarball.Efraim Flashner
* gnu/packages/maven.scm (maven-compiler-plugin)[source]: Download using git-fetch.
2020-09-14gnu: maven-resources-plugin: Don't use unstable tarball.Efraim Flashner
* gnu/packages/maven.scm (maven-resources-plugin)[source]: Download using git-fetch.
2020-09-14gnu: maven-jar-plugin: Don't use unstable tarball.Efraim Flashner
* gnu/packages/maven.scm (maven-jar-plugin)[source]: Download using git-fetch.
2020-09-14gnu: java-hdrhistogram: Don't use unstable tarball.Efraim Flashner
* gnu/packages/java.scm (java-hdrhistogram)[source]: Download using git-fetch. [arguments]: Add phase to make source writable.
2020-09-14gnu: r-wgcna: Move to (gnu packages bioconductor).Ricardo Wurmus
This is a follow-up to commit 6e0ab26f31cd2bb7e5d88719d3d458df68c1963e. * gnu/packages/cran.scm (r-wgcna): Move from here... * gnu/packages/bioconductor.scm (r-wgcna): ...to here.
2020-09-14gnu: r-fithic: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-fithic): Move from here... * gnu/packages/bioconductor.scm (r-fithic): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14gnu: r-hitc: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-hitc): Move from here... * gnu/packages/bioconductor.scm (r-hitc): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14gnu: r-hdf5array: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-hdf5array): Move from here... * gnu/packages/bioconductor.scm (r-hdf5array): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14gnu: r-rhdf5lib: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Move from here... * gnu/packages/bioconductor.scm (r-rhdf5lib): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14gnu: r-beachmat: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-beachmat): Move from here... * gnu/packages/bioconductor.scm (r-beachmat): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14gnu: r-singlecellexperiment: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Move from here... * gnu/packages/bioconductor.scm (r-singlecellexperiment): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14gnu: r-scater: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-scater): Move from here... * gnu/packages/bioconductor.scm (r-scater): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14gnu: r-scran: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-scran): Move from here... * gnu/packages/bioconductor.scm (r-scran): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Move from here... * gnu/packages/bioconductor.scm (r-delayedmatrixstats): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14gnu: r-rgraphviz: Move to (gnu packages bioconductor).zimoun
* gnu/packages/graph.scm (r-rgraphviz): Move from here... * gnu/packages/bioconductor.scm (r-rgraphviz): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14gnu: r-preprocesscore: Move to (gnu packages bioconductor).zimoun
* gnu/packages/statistics.scm (r-preprocesscore): Move from here... * gnu/packages/bioconductor.scm (r-preprocesscore): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14gnu: r-fourcseq: Move to (gnu packages bioconductor).zimoun
* gnu/packages/cran.scm (r-fourcseq): Move from here... * gnu/packages/bioconductor.scm (r-fourcseq): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-09-14gnu: r-rgraphviz: Build reproducibly.Ricardo Wurmus
Fixes <https://bugs.gnu.org/43398>. * gnu/packages/graph.scm (r-rgraphviz)[arguments]: Add phase "make-reproducible".
2020-09-14gnu: r-quantreg: Update to 5.67.Ricardo Wurmus
* gnu/packages/statistics.scm (r-quantreg): Update to 5.67.
2020-09-14gnu: r-cowplot: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.0. [native-inputs]: Add r-knitr.
2020-09-14gnu: r-rcpparmadillo: Update to 0.9.900.3.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.3.0.
2020-09-14gnu: r-ggdendro: Update to 0.1.22.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.22.
2020-09-14gnu: r-stringi: Update to 1.5.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-stringi): Update to 1.5.3.
2020-09-14gnu: r-mass: Update to 7.3-53.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mass): Update to 7.3-53.
2020-09-14gnu: r-diversitree: Update to 0.9-14.Ricardo Wurmus
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-14.
2020-09-14gnu: r-seurat: Update to 3.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-seurat): Update to 3.2.1. [propagated-inputs]: Remove r-ape; add r-matrixstats.
2020-09-14gnu: r-rfast: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rfast): Update to 2.0.1.
2020-09-14gnu: r-scatterpie: Update to 0.1.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.5.
2020-09-14gnu: r-forecast: Update to 8.13.Ricardo Wurmus
* gnu/packages/cran.scm (r-forecast): Update to 8.13.
2020-09-14gnu: r-gamlss: Update to 5.2-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gamlss): Update to 5.2-0.
2020-09-14gnu: r-parameters: Update to 0.8.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.8.5.
2020-09-14gnu: r-systemfonts: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.1.
2020-09-14gnu: r-dalex: Update to 2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-dalex): Update to 2.0.
2020-09-14gnu: r-sf: Update to 0.9-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-sf): Update to 0.9-6.
2020-09-14gnu: r-deldir: Update to 0.1-29.Ricardo Wurmus
* gnu/packages/cran.scm (r-deldir): Update to 0.1-29.
2020-09-14gnu: r-shinyjs: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinyjs): Update to 2.0.0. [native-inputs]: Add r-knitr.
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