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2018-03-20gnu: gmp-ecm: Update to 7.0.4....* gnu/packages/algebra.scm (gmp-ecm): Update to 7.0.4. [source]: Use predictable URI. Tobias Geerinckx-Rice
2018-03-20gnu: r-spams: Use predictable source URI....* gnu/packages/statistics.scm (r-spams)[source]: Use predictable URI. Tobias Geerinckx-Rice
2018-03-20gnu: pigx-chipseq: Update to 0.0.9....* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.9. [inputs]: Add coreutils and grep. Ricardo Wurmus
2018-03-20gnu: Add python-logwrap....* gnu/packages/python.scm (python-logwrap): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Vijayalakshmi
2018-03-20gnu: python-ptyprocess: Update source URL....* gnu/packages/python.scm (python-ptyprocess)[origin](source): Update URL. Oleg Pykhalov
2018-03-20gnu: rofi: Update source hash....The tarball was updated in-place with a bugfix; see <https://github.com/DaveDavenport/rofi/issues/782>. * gnu/packages/xdisorg.scm (rofi)[source](sha256): Adjust hash. [arguments]: Remove phase 'add-missing-configuration-files'. Marius Bakke
2018-03-20Correct name and Email for ng0....* .mailmap: Correct name and Email for ng0. * Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish gnu/packages/accessibility.scm, gnu/packages/admin.scm, gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/cinnamon.scm, gnu/packages/compression.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/emacs.scm, gnu/packages/enlightenment.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile.scm, gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm, gnu/packages/libcanberra.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm, gnu/packages/ncurses.scm, gnu/packages/networking.scm, gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm, gnu/packages/perl-check.scm, gnu/packages/perl.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm, gnu/packages/telephony.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm, gnu/services/desktop.scm, gnu/services/version-control.scm, gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Likewise. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> ng0
2018-03-20gnu: ruby-sanitize: Update to 4.6.3....This fixes CVE-2018-3740. * gnu/packages/ruby.scm (ruby-sanitize): Update to 4.6.3. Kei Kebreau
2018-03-20gnu: cdogs-sdl: Update to commit bab20313....Fixes <https://bugs.gnu.org/30623>. * gnu/packages/games.scm (cdogs-sdl): Update to commit bab2031369b9ea2dbeb7eedbde10a43dd8ca83db. [source]: Use git-fetch. 宋文武
2018-03-20gnu: Add r-dyn....* gnu/packages/cran.scm (r-dyn): New variable. Sahithi Yarlagadda
2018-03-20gnu: pigx-bsseq: Update to 0.0.8....* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.8. Ricardo Wurmus
2018-03-20Merge branch 'staging'Marius Bakke
2018-03-20gnu: pigx-rnaseq: Update to 0.0.3....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.3. [inputs]: Add gzip. Ricardo Wurmus
2018-03-20gnu: dnsmasq: Fix description typos....* gnu/packages/dns.scm (dnsmasq)[description]: Fix some typos. Tobias Geerinckx-Rice
2018-03-20gnu: dnsmasq: Update to 2.79....* gnu/packages/dns.scm (dnsmasq): Update to 2.79. Tobias Geerinckx-Rice
2018-03-20gnu: certbot: Update to 0.22.1....* gnu/packages/tls.scm (python-acme, certbot): Update to 0.22.1. Marius Bakke
2018-03-20gnu: python-cryptography: Update to 2.2....* gnu/packages/python-crypto.scm (python-cryptography-vectors, python-cryptography): Update to 2.2. Marius Bakke
2018-03-20gnu: imlib2: Update to 1.5.1....* gnu/packages/image.scm (imlib2): Update to 1.5.1. Marius Bakke
2018-03-20gnu: imagemagick: Update to 6.9.9-39....* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-39. Marius Bakke
2018-03-20gnu: zziplib: Correct license....* gnu/packages/compression.scm (zziplib)[license]: Add MPL1.1. Marius Bakke
2018-03-20gnu: zziplib: Update to 0.13.69....* gnu/packages/compression.scm (zziplib): Update to 0.13.69. [home-page]: Use new GitHub home. [source](uri): Adjust accordingly. [arguments]: Remove. Marius Bakke
2018-03-20gnu: rofi: Update to 1.5.1....* gnu/packages/xdisorg.scm (rofi): Update to 1.5.1. Marius Bakke
2018-03-20Revert "Revert "gnu: patchelf: Update argument phase.""...This change only affects armhf, which doesn't use PatchELF. My bad! This reverts commit b1d096f869ed53b84486855d73c7e9070fdf3ae2. Marius Bakke
2018-03-20Revert "build-system/meson: Use 'target-arm32?' for armhf-linux case."...This requires adding (guix utils) to the build inputs, and causes too many rebuilds for now. This reverts commit 24a2e9172a2d8970d57865c6130f2184385183a3. Marius Bakke
2018-03-20Revert "gnu: patchelf: Update argument phase."...It causes too many rebuilds this late in the 'staging' cycle. This reverts commit c1d1cd817c7ab8d99e962e286c207943765a8e8f. Marius Bakke
2018-03-19gnu: uwsgi: Update to 2.0.17 [fixes CVE-2018-7490]....* gnu/packages/web.scm (uwsgi): Update to 2.0.17. [source]: Use HTTPS URL. Leo Famulari
2018-03-19gnu: mcron: Update to 1.1 and deprecate "mcron2"....* gnu/packages/guile.scm (mcron): Update to 1.1. [native-inputs]: Add TZDATA-FOR-TESTS. [arguments]: New field. (mcron2): Define using 'deprecated-package'. * gnu/services/mcron.scm: Replace 'mcron2' with 'mcron'. * doc/guix.texi (Scheduled Job Execution): Likewise. * gnu/tests/base.scm (%mcron-os): Remove comment about mcron2. Ludovic Courtès
2018-03-19gnu: linux-libre: Update to 4.15.11....* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.11. (%linux-libre-hash): Update hash. Mark H Weaver
2018-03-19gnu: linux-libre@4.14: Update to 4.14.28....* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.28. (%linux-libre-4.14-hash): Update hash. Mark H Weaver
2018-03-19gnu: linux-libre@4.9: Update to 4.9.88....* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.88. Mark H Weaver
2018-03-19gnu: linux-libre@4.4: Update to 4.4.122....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.122. Mark H Weaver
2018-03-19gnu: weechat: Update to 2.1....* gnu/packages/irc.scm (weechat): Update to 2.1. Tobias Geerinckx-Rice
2018-03-19gnu: perl-xml-compile-soap: Update to 3.24....* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.24. Tobias Geerinckx-Rice
2018-03-19gnu: perl-xml-simple: Update to 2.25....* gnu/packages/xml.scm (perl-xml-simple): Update to 2.25. Tobias Geerinckx-Rice
2018-03-19gnu: perl-math-random-secure: Fix typo....* gnu/packages/crypto.scm (perl-math-random-secure)[description]: Fix the spelling of ‘millennia’. Tobias Geerinckx-Rice
2018-03-19build-system/meson: Use 'target-arm32?' for armhf-linux case....* guix/build-system/meson.scm (lower, meson-build): Replace armhf-linux detection with 'target-arm32?' macro. Efraim Flashner
2018-03-19gnu: pigx-bsseq: Update to 0.0.7....* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7. [inputs]: Add coreutils, sed, and grep. Ricardo Wurmus
2018-03-19gnu: bismark: Fix references to gunzip....* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to gunzip executable. [inputs]: Add gzip. Ricardo Wurmus
2018-03-19gnu: pigx-scrnaseq: Update to 0.0.3....* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.3. [inputs]: Add coreutils and perl. Ricardo Wurmus
2018-03-19patchelf: Use 'https' for source uri....* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri. Efraim Flashner
2018-03-19patchelf: Use 'https' for source uri....* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri. Efraim Flashner
2018-03-19gnu: patchelf: Update argument phase....* gnu/packages/elf.scm (patchelf)[arguments]: Use 'modify-phases' syntax. Replace 'system*' with 'invoke'. Efraim Flashner
2018-03-19gnu: patchelf: Use 'target-arm32?' for armhf-linux case....* gnu/packages/elf.scm (patchelf)[inputs]: Replace armhf-linux detection logic with 'target-arm32?' macro. [arguments]: Same. Efraim Flashner
2018-03-19gnu: python-paramiko: Update to 2.1.5....* gnu/packages/python-crypto.scm (python-paramiko, python2-paramiko): Update to 2.1.5. Leo Famulari
2018-03-19gnu: python-pynacl: Update to 1.2.0....* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.2.0. [native-inputs]: Add python-hypothesis. Leo Famulari
2018-03-19gnu: pigx: Update to 0.0.2....* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.2. Ricardo Wurmus
2018-03-19gnu: r-rcas: Use ghc-pandoc-citeproc-with-pandoc-1....* gnu/packages/bioinformatics.scm (r-rcas)[inputs]: Replace ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: bash-completion: Update to 2.8....* gnu/packages/bash.scm (bash-completion): Update to 2.8. * gnu/packages/patches/bash-completion-directories.patch: Update context. Tobias Geerinckx-Rice
2018-03-19gnu: hdparm: Update to 9.55....* gnu/packages/linux.scm (hdparm): Update to 9.55. Tobias Geerinckx-Rice
2018-03-19gnu: libtirpc: Update to 1.0.3....* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.3. [source]: Remove patch. * gnu/packages/patches/libtirpc-missing-headers.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
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