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2016-05-31gnu: nginx: Update to 1.10.1 [Fixes CVE-2016-4450]....* gnu/packages/web.scm (nginx): Update to 1.10.1. Efraim Flashner
2016-05-31gnu: autogen: Use 'modify-phases'....* gnu/packages/autogen.scm (autogen)[arguments]: Use 'modify-phases'. Efraim Flashner
2016-05-31gnu: autogen: Update to 5.18.10....* gnu/packages/autogen.scm (autogen): Update to 5.18.10. Efraim Flashner
2016-05-31gnu: scrot: Use 'modify-phases'....* gnu/packages/xdisorg.scm (scrot)[arguments]: Use 'modify-phases'. Efraim Flashner
2016-05-31gnu: scrot: Fix typo in source uri....* gnu/packages/xdisorg.scm (scrot)[source]: Fix typo in uri. This is a follow-up to 9da459f350709af0cd92c3eb7ddd459eda5959dd. Efraim Flashner
2016-05-31gnu: emms: Use 'modify-phases'....* gnu/packages/emacs.scm (emms)[arguments]: Use 'modify-phases'. Efraim Flashner
2016-05-31gnu: emms: Update to 4.1....* gnu/packages/emacs.scm (emms): Update to 4.1. Efraim Flashner
2016-05-31gnu: librecad: Update to 2.0.11....* gnu/packages/engineering.scm (librecad): Update to 2.0.11. Efraim Flashner
2016-05-31gnu: dosfstools: Update to 4.0....* gnu/packages/disk.scm (dosfstools): Update to 4.0. [arguments]: Re-enable the 'configure phase. Efraim Flashner
2016-05-31gnu: microscheme: Update to 0.9.3....* gnu/packages/avr.scm (microscheme): Update to 0.9.3. Efraim Flashner
2016-05-31gnu: munge: Update to 0.5.12....* gnu/packages/admin.scm (munge): Update to 0.5.12. Efraim Flashner
2016-05-31import github: Add to extension list....* guix/import/github.scm (find-extension): Add '.tgz' extension. Efraim Flashner
2016-05-31gnu: obs: Update to 0.14.2....* gnu/packages/video.scm (obs): Update to 0.14.2. Efraim Flashner
2016-05-31gnu: emacs-better-defaults: Specify source file name....* gnu/packages/emacs.scm (emacs-better-defaults)[source]: Specify a useful file name, as usual with tarballs from GitHub. David Thompson
2016-05-31gnu: imagemagick: Fix CVE-2016-5118....* gnu/packages/patches/imagemagick-CVE-2016-5118.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/imagemagick.scm (imagemagick): Use it. Leo Famulari
2016-05-31gnu: graphicsmagick: Update to 1.3.24 [security update]....Fixes CVE-2016-{2317, 2318, 5118} and many other security issues described in 'NEWS.txt'. * gnu/packages/patches/graphicsmagick-CVE-2016-5118.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.24. [source]: Remove patch. Leo Famulari
2016-05-31daemon: Substitute queries return immediately when substitutes are disabled....Reported by Federico Beffa <beffa@ieee.org> at <https://lists.gnu.org/archive/html/guix-devel/2016-05/msg00928.html>. * nix/libstore/local-store.cc (LocalStore::querySubstitutablePaths) (LocalStore::querySubstitutablePathInfos): Return when 'settings.useSubstitutes' is false. * tests/store.scm ("references/substitutes missing reference info"): Make sure to return #f on failure. * tests/store.scm ("substitutable-path-info when substitutes are turned off"): ("substitutable-paths when substitutes are turned off"): New tests. Ludovic Courtès
2016-05-31daemon: Fix typo....Fixes a regression/typo introduced in e08380fb6cefd3fd67c3c220a3ddaf385e6413cf. * nix/libstore/build.cc (DerivationGoal::startBuilder): Canonicalize "/tmp", not "/tmp/guix-build". Ludovic Courtès
2016-05-31offload: Use (guix build syscalls)....This is a followup to 4e0ea3eb288c2143b44bf324c64047762c72d3b3. * guix/scripts/offload.scm: Use (guix build syscalls). Ludovic Courtès
2016-05-31daemon: Remove unused XML output code....* nix/local.mk (libutil_a_SOURCES): Remove libutil/xml-writer.cc. (libutil_headers): Remove libutil/xml-writer.hh. * nix/libutil/xml-writer.hh, nix/libutil/xml-writer.cc: Remove. Ludovic Courtès
2016-05-31gnu: Add ghmm....* gnu/packages/machine-learning.scm (ghmm): New variable. Ricardo Wurmus
2016-05-31gnu: gimp: Update to 2.8.16....* gnu/packages/gimp.scm (gimp): Update to 2.8.16. Efraim Flashner
2016-05-31gnu: Add r-genomationdata....* gnu/packages/bioinformatics.scm (r-genomationdata): New variable. Ricardo Wurmus
2016-05-31gnu: Add r-runit....* gnu/packages/statistics.scm (r-runit): New variable. Ricardo Wurmus
2016-05-31gnu: julia: Update to 0.4.5....* gnu/packages/julia.scm (julia): Update to 0.4.5. (libuv-julia): Update commit. Ricardo Wurmus
2016-05-31gnu: Add r-knitrbootstrap....* gnu/packages/statistics.scm (r-knitrbootstrap): New variable. Ricardo Wurmus
2016-05-31daemon: rounds: Keep the differing output if -K is given....Regardless of -K, we now also print which output differs. Eelco Dolstra
2016-05-31daemon: Canonicalize gids to 0....Previously files in the Nix store were owned by root or by nixbld, depending on whether they were created by a substituter or by a builder. This doesn't matter much, but causes spurious diffoscope differences. So use root everywhere. Eelco Dolstra
2016-05-31daemon: check: Keep the differing output if -K is given....This makes it easier to investigate the non-determinism, e.g. $ nix-build pkgs/stdenv/linux -A stage1.pkgs.zlib --check -K error: derivation ‘/nix/store/l54i8wlw22656i4pk05c52ngv9rpl39q-zlib-1.2.8.drv’ may not be deterministic: output ‘/nix/store/11a27shh6n2ivi4a7s964i65ql80cf27-zlib-1.2.8’ differs from ‘/nix/store/11a27shh6n2ivi4a7s964i65ql80cf27-zlib-1.2.8-check’ $ diffoscope /nix/store/11a27shh6n2ivi4a7s964i65ql80cf27-zlib-1.2.8 /nix/store/11a27shh6n2ivi4a7s964i65ql80cf27-zlib-1.2.8-check ... ├── lib/libz.a │ ├── metadata │ │ @@ -1,15 +1,15 @@ │ │ -rw-r--r-- 30001/30000 3096 Jan 12 15:20 2016 adler32.o ... │ │ +rw-r--r-- 30001/30000 3096 Jan 12 15:28 2016 adler32.o ... Co-authored-by: Ludovic Courtès <ludo@gnu.org> Eelco Dolstra
2016-05-31daemon: check: Fix "failed to produce output path"....This occured when sandbox building is disabled, at least one output exists, and at least one other output does not. Eelco Dolstra
2016-05-31daemon: check: Fix assertion failure when some outputs are missing....E.g. $ nix-build pkgs/stdenv/linux/ -A stage1.pkgs.perl --check nix-store: src/libstore/build.cc:1323: void nix::DerivationGoal::tryToBuild(): Assertion `buildMode != bmCheck || validPaths.size() == drv->outputs.size()' failed. when perl.out exists but perl.man doesn't. The fix is to only check the outputs that exist. Note that "nix-build -A stage1.pkgs.all --check" will still give a (proper) error in this case. Eelco Dolstra
2016-05-31daemon: When repairing, rebuild if there is no substituter.Eelco Dolstra
2016-05-31daemon: Fix --repair failure on multiple-output derivations....If repair found a corrupted/missing path that depended on a multiple-output derivation, and some of the outputs of the latter were not present, it failed with a message like error: path ‘/nix/store/cnfn9d5fjys1y93cz9shld2xwaibd7nn-bash-4.3-p42-doc’ is not valid Co-authored-by: Ludovic Courtès <ludo@gnu.org> Eelco Dolstra
2016-05-31daemon: ~PathLocks(): Handle exceptions....Otherwise, since the call to write a "d" character to the lock file can fail with ENOSPC, we can get an unhandled exception resulting in a call to terminate(). Eelco Dolstra
2016-05-31daemon: Handle /tmp being a symlink....* nix/libstore/build.cc (DerivationGoal::startBuilder): Call 'canonPath' on "/tmp". Eelco Dolstra
2016-05-31services: urandom-seed: Set umask to 077 while shutting down....* gnu/services/base.scm (urandom-seed-shepherd-service): Call 'umask'. Leo Famulari
2016-05-30gnu: libxml2: Update replacement to 2.9.4 [security fixes]....This fixes CVE-2016-{1762, 1833, 1834, 1835, 1836, 1837, 1838, 1839, 1840, 3627, 3705, 4483}. * gnu/packages/patches/libxml2-CVE-2016-3627.patch, gnu/packages/patches/libxml2-CVE-2016-3705.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/xml.scm (libxml2/fixed): Update to 2.9.4. [source]: Remove patches. Leo Famulari
2016-05-31container: Gracefully report mount errors in the child process....Fixes <http://bugs.gnu.org/23306>. * gnu/build/linux-container.scm (run-container): Use 'socketpair' instead of 'pipe'. Rename 'in' to 'child' and 'out' to 'parent'. Send a 'ready message or an exception argument list from the child to the parent; adjust the parent accordingly. * tests/containers.scm ("call-with-container, mnt namespace, wrong bind mount"): New test. * tests/guix-environment-container.sh: Add test with --expose=/does-not-exist. Ludovic Courtès
2016-05-31container: Gracefully handle failure to set up user namespaces....* gnu/build/linux-container.scm (run-container): Exit when the parent process doesn't say 'ready. Ludovic Courtès
2016-05-31download: Update CPAN mirrors....* guix/download.scm (mirrors)[cpan]: Add to mirror list. Efraim Flashner
2016-05-30gnu: vapoursynth: Update to 32....* gnu/packages/video.scm (vapoursynth): Update to 32. Efraim Flashner
2016-05-30gnu: Add zimg....* gnu/packages/image.scm (zimg): New variable. Efraim Flashner
2016-05-30gnu: mcrypt: Fix CVE-2012-4409, CVE-2012-4426, CVE-2012-4527....* gnu/packages/mcrypt.scm (mcrypt)[source]: Add patches. * gnu/packages/patches/mcrypt-CVE-2012-4409.patch, gnu/packages/patches/mcrypt-CVE-2012-4426.patch, gnu/packages/patches/mcrypt-CVE-2012-4527.patch: New variables. * gnu/local.mk (dist_patch_DATA): Add them. Efraim Flashner
2016-05-30gnu: imagemagick: Update to 6.9.4-5....* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-5. Leo Famulari
2016-05-30gnu: Remove xgcc-avr....We now have a dedicated package module for the AVR toolchain with important modifications on top of what cross-gcc produces. * gnu/packages/cross-base.scm (xgcc-avr): Delete. David Thompson
2016-05-30gnu: Add avr-toolchain....* gnu/packages/avr.scm (avr-toolchain): New procedure. (avr-toolchain-4.9, avr-toolchain-5): New variables. David Thompson
2016-05-30gnu: avr-libc: Update to 2.0.0....* gnu/packages/avr.scm (avr-libc): Update to 2.0.0. David Thompson
2016-05-30gnu: avr-libc: Fix build....* gnu/packages/avr.scm (avr-libc): Update to 2.0.0. [native-inputs]: Use new avr-gcc and avr-binutils. [arguments]: Add phase to unset C_INCLUDE_PATH. David Thompson
2016-05-30gnu: Add avr-gcc-5....* gnu/packages/avr.scm (avr-gcc-5): New variable. David Thompson
2016-05-30gnu: Add avr-gcc....* gnu/packages/avr.scm (avr-gcc): New variable. David Thompson
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