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2019-06-20gnu: Replace uses of 'cmake' with 'cmake-minimal'....This follows up commit 2f33a7321e5e37d37f57c229c8079cb4ffd10834 which introduced a new CMAKE-MINIMAL variant for use in package inputs. * gnu/packages/databases.scm (python-pyarrow)[native-inputs]: Replace CMAKE with CMAKE-MINIMAL. * gnu/packages/emacs-xyz.scm (emacs-scel)[native-inputs]: Likewise. * gnu/packages/firmware.scm (ath9k-htc-firmware)[native-inputs]: Likewise. * gnu/packages/games.scm (0ad, the-butterfly-effect)[native-inputs]: Likewise. * gnu/packages/gnome.scm (deja-dup)[native-inputs]: Likewise. * gnu/packages/ibus.scm (ibus-rime)[native-inputs]: Likewise. * gnu/packages/rust.scm (rust-1.19)[native-inputs]: Likewise. * gnu/packages/simulation.scm (fenics)[native-inputs]: Likewise. * gnu/packages/squirrel.scm (squirrel)[native-inputs]: Likewise. * gnu/packages/video.scm (handbrake)[native-inputs]: Likewise. * gnu/packages/virtualization.scm (xen)[native-inputs]: Likewise. * gnu/packages/vulkan.scm (shaderc)[native-inputs]: Likewise. Marius Bakke
2019-06-20packages: Retain version in file name when repacking source checkouts....Fixes <https://bugs.gnu.org/34066>. * guix/packages.scm (patch-and-repack)<tarxz-name>: If FILE-NAME is a source checkout, reuse the name without the '-checkout' part. Marius Bakke
2019-06-20gnu: dbus: Update to 1.12.16....* gnu/packages/patches/dbus-CVE-2019-12749.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/glib.scm (dbus): Update to 1.12.16. [replacement]: Remove. (dbus/fixed): Remove variable. Marius Bakke
2019-06-20Merge branch 'staging' into core-updatesMarius Bakke
2019-06-20gnu: python-sphinx: Update to 2.1.2....* gnu/packages/sphinx.scm (python-sphinx): Update to 2.1.2. Marius Bakke
2019-06-20Merge branch 'master' into stagingMarius Bakke
2019-06-20gnu: ungoogled-chromium: Disable parallel build....* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Set #:parallel-build? #f. Adjust 'build' phase to account for it. Marius Bakke
2019-06-20gnu: samba: Update to 4.10.5 [fixes CVE-2019-12435, CVE-2019-12436]....* gnu/packages/samba.scm (samba): Update to 4.10.5. Marius Bakke
2019-06-20gnu: ungoogled-chromium: Update to 75.0.3770.100-0.5d8abc3....* gnu/packages/chromium.scm (%chromium-version): Set to 75.0.3770.100. (%chromium-origin): Update hash. Marius Bakke
2019-06-20gnu: openh264: Update to 2.0.0....* gnu/packages/video.scm (openh264): Update to 2.0.0. [source](uri): Adjust file name. Marius Bakke
2019-06-20gnu: ungoogled-chromium: Install icons....* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Install icons. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Alex Griffin
2019-06-20gnu: Use HTTPS for sphinx-doc.org....* gnu/packages/sphinx.scm (python-sphinx, python-sphinxcontrib-websupport)[home-page]: Use HTTPS. Marius Bakke
2019-06-20gnu: python-unidecode: Update to 1.1.0....* gnu/packages/python-xyz.scm (python-unidecode): Update to 1.1.0. Marius Bakke
2019-06-20gnu: dbus: Fix CVE-2019-12749....* gnu/packages/patches/dbus-CVE-2019-12749.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/glib.scm (dbus)[replacement]: New field. (dbus/fixed): New variable. Marius Bakke
2019-06-20gnu: pigx-rnaseq: Update to 0.0.7....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.7. [inputs]: Add coreutils and sed. Ricardo Wurmus
2019-06-20licenses: Add Historical Permission Notice and Disclaimer license...* gnu/licenses.scm (hpnd): New variable. Giovanni Biscuolo
2019-06-20gnu: Add iml....* gnu/packages/algebra.scm (iml): New variable. Andreas Enge
2019-06-20gnu: Add ppl....* gnu/packages/maths.scm (ppl): New variable. Andreas Enge
2019-06-20services: opensmtpd: Extend the PAM service....* gnu/services/mail.scm (%opensmtpd-pam-services): New variable. (opensmtpd-service-type)[extensions]: Add it, extending PAM-ROOT-SERVICE-TYPE. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Kristofer Buffington
2019-06-20gnu: ngs-sdk: Update to 2.9.6....* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.6. Ricardo Wurmus
2019-06-20gnu: sra-tools: Update to 2.9.6....* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.6. Ricardo Wurmus
2019-06-20gnu: ncbi-vdb: Update to 2.9.6....* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.6. [arguments]: Pass HAVE_HDF5 make flag; add build phase "patch-krypto-flags". Ricardo Wurmus
2019-06-20import: hackage: Add two expected failing test cases....This adds failing test cases for two hackage import bugs: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25138 https://debbugs.gnu.org/cgi/bugreport.cgi?bug=35743 * tests/hackage.scm: Make comment style consistent. Add two cabal parsing tests, marked as expected failures. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Robert Vollmert
2019-06-20utils: canonical-newline-port: Fix handling of carriage return at buffer end....Prior to this change the added test fails for me locally at byte 1024. It might depend on some default buffer sizes. Fixes <https://bugs.gnu.org/35863>. * tests/utils.scm ("canonical-newline-port-1024"): Add test. * guix/utils.scm (canonical-newline-port): Correct comments on CR/LF. Remove CR even when they're at the end of the buffer. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Robert Vollmert
2019-06-20gnu: guile: Add 2.2.5....* gnu/packages/guile.scm (guile-2.2.5): New variable. Ludovic Courtès
2019-06-20gnu: python-jupyter-console: Update to 6.0.0....* gnu/packages/python-xyz.scm (python-jupyter-console): Update to 6.0.0. [arguments]: Enable tests. [propagated-inputs]: Replace python-prompt-toolkit-1 with python-prompt-toolkit. Ricardo Wurmus
2019-06-20gnu: python2-jupyter-console: Split from python-jupyter-console....* gnu/packages/python-xyz.scm (python2-jupyter-console): Implement without package-with-python2. Ricardo Wurmus
2019-06-20Revert "gnu: Add libgd."...This reverts commit 059e4c9a15b52f7e4b262e3317eac238bf53103d. Nicolas Goaziou
2019-06-20gnu: Add lrcalc....* gnu/packages/algebra.scm (lrcalc): New variable. Andreas Enge
2019-06-20gnu: Add eclib....* gnu/packages/algebra.scm (eclib): New variable. Andreas Enge
2019-06-20gnu: Add m4rie....* gnu/packages/algebra.scm (m4rie): New variable. Andreas Enge
2019-06-20gnu: weechat: update to 2.5...* gnu/packages/irc.scm (weechat): update to 2.5 Signed-off-by: Gábor Boskovits <boskovits@gmail.com> Josh Holland
2019-06-20gnu: Add python-fpylll....* gnu/packages/algebra.scm (python-fpylll): New variable. Nicolas Goaziou
2019-06-20gnu: fplll: Update to 5.2.1....* gnu/packages/algebra.scm (fplll): Update to 5.2.1. [source]: Use Github tagged release: the original tarball no longer exists. [native-inputs]: Add Autoconf and al. [homepage]: Update it, the previous one no longer exists. [description]: Expound description. Nicolas Goaziou
2019-06-20services: Fix typo in (gnu services mail) exports....* gnu/services/mail.scm (define-module): Re-spell ‘%default-imap4d-config-file’. Tobias Geerinckx-Rice
2019-06-20gnu: Add symmetrica....* gnu/packages/algebra.scm (symmetrica): New variable. * gnu/packages/patches/symmetrica-bruch.patch: * gnu/packages/patches/symmetrica-int32.patch: * gnu/packages/patches/symmetrica-return_values.patch: * gnu/packages/patches/symmetrica-sort_sum_rename.patch: New files. * gnu/local.mk (dist_patch_DATA): Add patches. Nicolas Goaziou
2019-06-20gnu: zathura: Install icons....* gnu/packages/pdf.scm (zathura)[native-inputs]: Add librsvg to build and install the application icons. Signed-off-by: Gábor Boskovits <boskovits@gmail.com> Alex Griffin
2019-06-20gnu: Add libgd....* gnu/packages/image.scm (libgd): New variable. Nicolas Goaziou
2019-06-20gnu: Move ratpoints into a different module....* gnu/packages/maths.scm (ratpoints): Move... * gnu/packages/algebra.scm: ...here. Nicolas Goaziou
2019-06-20gnu: spdlog: Clarify license....* gnu/packages/logging.scm (spdlog): Clarify license of the bundled fmt library. Signed-off-by: Gábor Boskovits <boskovits@gmail.com> Meiyo Peng
2019-06-20gnu: bind: Update to 9.14.3 [fixes CVE-2019-6471]....* gnu/packages/dns.scm (isc-bind): Update to 9.14.3. Tobias Geerinckx-Rice
2019-06-20gnu: zn_poly: Rename to zn-poly, according to our naming conventions....Reported by Nicolas Goaziou <mail@nicolasgoaziou.fr>. This is a follow-up to commit 01822e3ebf24031d6438fc4e7ad3a869ea12fdf4. * gnu/packages/sagemath.scm (zn_poly): Rename to... * gnu/packages/sagemath.scm (zn-poly): ...this. Andreas Enge
2019-06-19gnu: Add brial....* gnu/packages/sagemath.scm (brial): New variable. Andreas Enge
2019-06-19gnu: Add m4ri....* gnu/packages/algebra.scm (m4ri): New variable. Andreas Enge
2019-06-19gnu: Add crispy-doom....* gnu/packages/games.scm (crispy-doom): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Dan Frumin
2019-06-19gnu: emacs-unpackaged-el: Add patch for missing require statement....* gnu/packages/emacs-xyz.scm (emacs-unpackaged-el)[source]: Add patch. * gnu/packages/patches/emacs-unpackaged-req.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brian Leung
2019-06-19gnu: Add numix-theme....* gnu/packages/gnome.scm (numix-theme): New variable Signed-off-by: Ludovic Courtès <ludo@gnu.org> Giacomo Leidi
2019-06-19grafts: Avoid 'query-valid-derivers' RPC....Previously we'd make 502 'query-valid-derivers' RPCs for "guix build vim -d", and after this patch, we don't do any. Furthermore, the previous strategy was "stateful" in the sense that 'item->deriver' could return a derivation that is not the one that was actually computed by this process, but an "equivalent" one (due to fixed-output derivations); which one is chosen would depend on the state of the store. This in turn means that we'd have to call 'read-derivation-from-file' to actually read .drv files (as opposed to getting them from %DERIVATION-CACHE). This is costly and doesn't work with GUIX_DAEMON_SOCKET=ssh://…. * guix/grafts.scm (item->deriver): Remove. (reference-origin): New procedure. (cumulative-grafts): Use it instead of 'item->deriver'. Ludovic Courtès
2019-06-19derivations: Add 'derivation-input-derivation'....* guix/derivations.scm (derivation-input-derivation): New procedure. (derivation-prerequisites): Use it. Ludovic Courtès
2019-06-19gnu: Add python-pandocfilters....* gnu/packages/textutils.scm (python-pandocfilters): New variable. Nicolas Goaziou
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