| Age | Commit message (Expand) | Author |
|---|
| 2022-12-13 | gnu: python-hicexplorer: Update to 3.7.2....* gnu/packages/bioinformatics.scm (python-hicexplorer): Update to 3.7.2.
[build-system]: Use pyproject-build-system.
[arguments]: Use gexp; remove phase "loosen-up-requirements"; add test-flags
to skip some tests; add phase "remove-dependency-on-krbalancing" to remove a
dependency on an unlicensed package; add phase "fix-references"; add phase
"run-only-low-mem-tests".
[propagated-inputs]: Remove python-configparser and python-six; add
python-biopython, python-cleanlab-1, python-fit-nbinom, python-graphviz,
python-hic2cool, python-hicmatrix, python-hyperopt, python-imbalanced-learn,
python-ipykernel, python-psutil, python-pybedtools, python-pygenometracks,
python-scikit-learn, and python-tqdm.
[native-inputs]: Add graphviz.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-pygenometracks: Update to 3.5....* gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.5.
[build-system]: Use pyproject-build-system.
[arguments]: Quote phases instead of full list of arguments; remove trailing #T
from build phase.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-hicmatrix: Update to 16....* gnu/packages/bioinformatics.scm (python-hicmatrix): Update to 16.
[build-system]: Use pyproject-build-system.
[arguments]: Shuffle the quote.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-biopython: Update to 1.80....* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.80.
[build-system]: Use pyproject-build-system.
[arguments]: Remove trailing #T from build phase.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-hyperopt: Update to 0.2.7....* gnu/packages/machine-learning.scm (python-hyperopt): Update to 0.2.7.
[arguments]: Adjust check phase; disable test_distribution_rvs test.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add python-py4j.
[native-inputs]: Remove python-ipython and python-ipyparallel.
| Ricardo Wurmus |
| 2022-12-13 | gnu: python-graphviz: Update to 0.20.1....* gnu/packages/graphviz.scm (python-graphviz): Update to 0.20.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom "check" phase; add "prepare-check" phase.
[native-inputs]: Remove python-mock.
| Ricardo Wurmus |
| 2022-12-12 | gnu: python-anndata: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-anndata)[build-system]: Use
pyproject-build-system.
[arguments]: Replace custom 'build phase with 'set-version phase; remove
custom 'install phase; disable doctest via build phase 'disable-doctests and
the #:test-flags property.
[propagated-inputs]: Add python-scikit-learn.
[native-inputs]: Add python-boltons.
| Ricardo Wurmus |
| 2022-12-12 | gnu: python-zarr: Update to 2.13.3....* gnu/packages/python-xyz.scm (python-zarr): Update to 2.13.3.
| Ricardo Wurmus |
| 2022-12-12 | gnu: python-numcodecs: Update to 0.10.2....* gnu/packages/python-xyz.scm (python-numcodecs): Update to 0.10.2.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests; add phase 'build-extensions; remove custom 'check
phase.
[propagated-inputs]: Add python-entrypoints and python-typing-extensions-next.
| Ricardo Wurmus |
| 2022-12-12 | gnu: python-typer: Simplify by using pyproject-build-system....* gnu/packages/python-xyz.scm (python-typer)[build-system]: Use
pyproject-build-system.
[arguments]: Remove extra quoting; remove custom 'build phase; remove custom
'install phase; remove custom 'check phase; add 'pre-check phase.
[synopsis]: Pull onto the same line.
[description]: Reformat.
| Ricardo Wurmus |
| 2022-12-12 | gnu: Add erlang-yamerl....* gnu/packages/erlang.scm (erlang-yamerl): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
| jgart |
| 2022-12-12 | gnu: Add erlang-jsx....* gnu/packages/erlang.scm (erlang-jsx): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
| jgart |
| 2022-12-12 | services: guix-build-coordinator: Fix service startup....Previously the service would keep starting more and more processes.
* gnu/services/guix.scm (guix-build-coordinator-shepherd-services): Fix how
make-forkexec-constructor is called.
| Christopher Baines |
| 2022-12-12 | gnu: re2: Update to 2022-12-01....* gnu/packages/regex.scm (re2): Update to 2022-12-01.
| Marius Bakke |
| 2022-12-12 | tests: Add system tests for each supported kernel version....* gnu/tests/base.scm (%test-basic-os): Rename to ...
(test-basic-os): ... this, and turn into procedure that takes optional KERNEL
argument.
(%test-basic-os): Use that procedure.
(%test-linux-libre-5.15, %test-linux-libre-5.10, %test-linux-libre-5.4,
%test-linux-libre-4.19, %test-linux-libre-4.14, %test-linux-libre-4.9): New
tests.
| Marius Bakke |
| 2022-12-12 | gnu: f2fs-tools: Remove obsolete phase....* gnu/packages/linux.scm (f2fs-tools)[arguments]: Remove.
(f2fs-tools-1.7)[arguments]: Add #:phases.
| Marius Bakke |
| 2022-12-12 | gnu: f2fs-tools: Update to 1.15.0....* gnu/packages/linux.scm (f2fs-tools): Update to 1.15.0.
(f2fs-tools/static)[arguments]: Add #:make-flags. Remove make-static phase.
| Marius Bakke |
| 2022-12-12 | gnu: f2fs-tools@1.7: Don't fetch autogenerated git snapshot....* gnu/packages/linux.scm (f2fs-tools-1.7)[source]: Switch to GIT-FETCH.
| Marius Bakke |
| 2022-12-12 | gnu: f2fs-tools: Don't fetch autogenerated git snapshot....* gnu/packages/linux.scm (f2fs-tools)[source]: Switch to GIT-FETCH.
| Marius Bakke |
| 2022-12-12 | gnu: f2fs-tools: Reverse inheritance relationship....* gnu/packages/linux.scm (f2fs-tools): Update to 1.14.0.
[arguments]: Remove obsolete #:configure-flags and trailing #t in phase.
[inputs]: Remove labels.
(f2fs-tools-1.7): Inherit from above; add #:configure-flags.
[inputs]: Remove labels.
| Marius Bakke |
| 2022-12-12 | gnu: ungoogled-chromium: Build with ffmpeg@4....This is a follow-up to commit 79564bf9977ebba0b31d8dc291eb039142f51f68.
* gnu/packages/chromium.scm (ungoogled-chromium)[inputs]: Change from FFMPEG
to FFFMPEG-4.
| Marius Bakke |
| 2022-12-12 | gnu: Add r-golem....* gnu/packages/cran.scm (r-golem): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-attempt....* gnu/packages/cran.scm (r-attempt): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-anytime....* gnu/packages/cran.scm (r-anytime): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-shinycustomloader....* gnu/packages/cran.scm (r-shinycustomloader): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-logging....* gnu/packages/cran.scm (r-logging): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-asics....* gnu/packages/bioconductor.scm (r-asics): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-pepsnmr....* gnu/packages/bioconductor.scm (r-pepsnmr): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-ptw....* gnu/packages/cran.scm (r-ptw): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-rcppde....* gnu/packages/cran.scm (r-rcppde): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-animalcules....* gnu/packages/bioconductor.scm (r-animalcules): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-plotroc....* gnu/packages/cran.scm (r-plotroc): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-gridsvg....* gnu/packages/cran.scm (r-gridsvg): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-gunifrac....* gnu/packages/cran.scm (r-gunifrac): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-dirmult....* gnu/packages/cran.scm (r-dirmult): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-modeest....* gnu/packages/cran.scm (r-modeest): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-fbasics....* gnu/packages/cran.scm (r-fbasics): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-timeseries....* gnu/packages/cran.scm (r-timeseries): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-gss....* gnu/packages/cran.scm (r-gss): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-stable....* gnu/packages/cran.scm (r-stable): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-rmutil....* gnu/packages/cran.scm (r-rmutil): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-statip....* gnu/packages/cran.scm (r-statip): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-amplican....* gnu/packages/bioconductor.scm (r-amplican): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-waffle....* gnu/packages/cran.scm (r-waffle): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-clustercrit....* gnu/packages/cran.scm (r-clustercrit): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-harshlight....* gnu/packages/bioconductor.scm (r-harshlight): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-altcdfenvs....* gnu/packages/bioconductor.scm (r-altcdfenvs): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-12 | gnu: Add r-makecdfenv....* gnu/packages/bioconductor.scm (r-makecdfenv): New variable.
| Mădălin Ionel Patrașcu |
| 2022-12-11 | .guix-authorizations: Authorise John Kehayias....* .guix-authorizations (podiki): Add OpenPGP key fingerprint.
| Tobias Geerinckx-Rice |
| 2022-12-11 | gnu: yajl: Improve description....* gnu/packages/web.scm (yajl)[synopsis, description]: Edit. Mark up.
Note generator.
| Tobias Geerinckx-Rice |
