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2022-09-21gnu: Add r-chromunity.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-chromunity): New variable.
2022-09-21gnu: Add r-skitools.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-skitools): New variable.
2022-09-21gnu: Add r-gchain.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gchain): New variable.
2022-09-21gnu: Add r-gtrack.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gtrack): New variable.
2022-09-21gnu: Add r-bamutils.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bamutils): New variable.
2022-09-21gnu: Add r-gutils.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gutils): New variable.
2022-09-21gnu: maven-slf4j-provider: Fix style.Artyom V. Poptsov
* gnu/packages/maven.scm (maven-slf4j-provider): Fix style. Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
2022-09-21gnu: maven-slf4j-provider: Bugfix.Artyom V. Poptsov
* gnu/packages/maven.scm (maven-slf4j-provider): Bugfix: Don't use "tar" to extract "java-slf4j-simple-source" as it is already unpacked; recursively copy the source instead. Signed-off-by: Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
2022-09-21gnu: telegram-desktop: Use API ID from Snap builds.Hilton Chain
* gnu/packages/telegram.scm (telegram-desktop)[#:configure-flags]: Use API ID from Telegram's official Snap builds. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-09-21gnu: telegram-desktop: Use modern package style.Hilton Chain
* gnu/packages/telegram.scm (%telegram-version) (cmake-helpers-for-telegram-desktop, codegen-for-telegram-desktop) (lib-base-for-telegram-desktop, lib-crl-for-telegram-desktop) (lib-lottie-for-telegram-desktop, lib-qr-for-telegram-desktop) (lib-rlottie-for-telegram-desktop,lib-rpl-for-telegram-desktop) (lib-spellcheck-for-telegram-desktop, lib-storage-for-telegram-desktop) (lib-tl-for-telegram-desktop, lib-ui-for-telegram-desktop) (lib-waylandshells-for-telegram-desktop, lib-webrtc-for-telegram-desktop) (lib-webview-for-telegram-desktop, tgcalls-for-telegram-desktop): New variables. (telegram-desktop)[arguments]: Convert to list of G-Expressions. <#:phases>: Inline cmake-helpers-for-telegram-desktop, codegen-for-telegram-desktop, lib-base-for-telegram-desktop, lib-crl-for-telegram-desktop, lib-lottie-for-telegram-desktop, lib-qr-for-telegram-desktop, lib-rlottie-for-telegram-desktop, lib-rpl-for-telegram-desktop, lib-spellcheck-for-telegram-desktop, lib-storage-for-telegram-desktop, lib-tl-for-telegram-desktop, lib-ui-for-telegram-desktop, lib-waylandshells-for-telegram-desktop, lib-webrtc-for-telegram-desktop, lib-webview-for-telegram-desktop, and tgcalls-for-telegram-desktop. [native-inputs]: Remove cmake-helpers. Drop labels. [inputs]: Remove codegen-source, lib-base-source, lib-crl-source, lib-lottie-source, lib-qr-source, lib-rlottie-source, lib-rpl-source, lib-spellcheck-source, lib-storage-source, lib-tl-source, lib-ui-source, lib-waylandshells-source, lib-webrtc-source, lib-webview-source and tgcalls-source. Drop labels. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-09-21gnu: webrtc-for-telegram-desktop: Use modern package style.Hilton Chain
* gnu/packages/telegram.scm (libvpx-for-telegram-desktop) (libyuv-for-telegram-desktop): New variables. (webrtc-for-telegram-desktop)[arguments]: Convert to list of G-Expressions. Inline libvpx-for-telegram-desktop and libyuv-for-telegram-desktop. [inputs]: Remove libvpx and libyuv. Drop labels. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-09-21gnu: telegram-desktop: Delete trailing #t.Hilton Chain
* gnu/packages/telegram.scm (telegram-desktop)[source]: Delete trailing #t. [arguments]<#:phases>: Likewise. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-09-21gnu: webrtc-for-telegram-desktop: Delete trailing #t.Hilton Chain
* gnu/packages/telegram.scm (webrtc-for-telegram-desktop)[source]: Delete trailing #t. [arguments]<#:phases>: Likewise. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-09-21gnu: Add gnome-console.Sughosha
* gnu/packages/gnome.scm (gnome-console): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-09-21gnu: Add gnome-text-editor.Sughosha
* gnu/packages/gnome.scm (gnome-text-editor): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-09-20gnu: guile-aiscm-next: Deprecate in favor of guile-aiscm.Ricardo Wurmus
* gnu/packages/machine-learning.scm (guile-aiscm-next): Define as a deprecated name for guile-aiscm.
2022-09-20gnu: guile-aiscm: Update to 0.24.2.Ricardo Wurmus
* gnu/packages/machine-learning.scm (guile-aiscm): Update to 0.24.2. [arguments]: Add configure flags for OpenCV modules; add build phase 'find-clearsilver; adjust phase 'use-llvm-config; add phase 'disable-broken-test. [inputs]: Add clearsilver, libgc, opencv, and tensorflow; replace ffmpeg with ffmpeg-4. [native-inputs]: Add protobuf-c; replace clang-13 and llvm-13 with clang-11 and llvm-11, respectively.
2022-09-20gnu: emacs-rustic: Update to 3.4.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-rustic): Update to 3.4.
2022-09-20gnu: emacs-repl-toggle: Update to 0.7.2.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-repl-toggle): Update to 0.7.2.
2022-09-20gnu: emacs-boxquote: Update to 2.3.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-boxquote): Update to 2.3.
2022-09-20gnu: emacs-osm: Update to 0.8.Morgan Smith
* gnu/packages/emacs-xyz.scm (emacs-osm): Update to 0.8. [arguments]<#:phases>: Add MAKEINFO phase. [native-inputs]: Add TEXINFO. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-09-20gnu: Add emacs-pdfgrep.pinoaffe
* gnu/packages/emacs-xyz.scm (emacs-pdfgrep): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-09-20gnu: emacs-setup: Update to 1.3.2.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-setup): Update to 1.3.2.
2022-09-20gnu: emacs-taxy: Update to 0.10.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-taxy): Update to 0.10.1.
2022-09-20linux-container: 'container-excursion*' marks its FDs as FD_CLOEXEC.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/57827>. Reported by Mathieu Othacehe <othacehe@gnu.org>. Fixes a regression introduced with the Shepherd 0.9.2 upgrade in 1ba0e38267c9ff8bb476285091be6e297bbf136e, whereby IN and OUT would no longer be closed when 'fork+exec-command/container' would call 'exec-command*' as part of the THUNK passed to 'container-excursion*'. This is because the Shepherd 0.9.2 assumes file descriptors are properly marked as O_CLOEXEC and, consequently, 'exec-command' no longer run the close(2) loop prior to 'exec'. * gnu/build/linux-container.scm (container-excursion*): Add calls to 'fcntl'.
2022-09-20home: import: Use (guix read-print) to render the config file.Ludovic Courtès
* guix/scripts/home/import.scm (manifest+configuration-files->code): Insert calls to 'comment' and 'vertical-space'. (import-manifest): Use 'pretty-print-with-comments/splice' instead of a loop on 'pretty-print'. * tests/home-import.scm (remove-recursively): New procedure. (eval-test-with-home-environment): Use it.
2022-09-20read-print: Add rule for 'home-bash-configuration'.Ludovic Courtès
* guix/read-print.scm (%newline-forms): Add 'home-bash-configuration'.
2022-09-20read-print: Correctly support multiple same-named newline forms.Ludovic Courtès
Previously (home-environment (services ...)) would not be considered a "newline form". This fixes it. * guix/read-print.scm (newline-form?): Use 'vhash-foldq*' instead of 'vhash-assq' and iterate over candidates. * tests/read-print.scm: Add test.
2022-09-20weather: Actually show the weather.Ludovic Courtès
* guix/scripts/weather.scm (report-server-coverage): Show a weather icon.
2022-09-20gnu: python-pyvcf: Update to 0.6.8-0.476169c.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pyvcf): Update to 0.6.8-0.476169c.
2022-09-20gnu: python-pyvcf: Use older setuptools.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pyvcf)[native-inputs]: Replace python-setuptools with python-setuptools-for-tensorflow.
2022-09-20gnu: r-mlr3ordinal: Update to 0.1.0-9000-1.736e3a3.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3ordinal): Update to 0.1.0-9000-1.736e3a3.
2022-09-20import/cran: description->package: Use COND and computed booleans.Ricardo Wurmus
* guix/import/cran.scm (description->package): Use COND with previously computed booleans instead of using CASE on REPOSITORY.
2022-09-20import/cran: download: Accept optional REF argument.Ricardo Wurmus
* guix/import/cran.scm (download): Accept REF argument for git downloads.
2022-09-20gnu: r-desctools: Update to 0.99.46.Ricardo Wurmus
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.46.
2022-09-20gnu: r-clubsandwich: Update to 0.5.8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.8.
2022-09-20gnu: r-forcats: Update to 0.5.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-forcats): Update to 0.5.2. [propagated-inputs]: Add r-cli, r-glue, r-lifecycle, and r-withr.
2022-09-20gnu: r-sn: Update to 2.1.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sn): Update to 2.1.0.
2022-09-20gnu: r-matrixmodels: Update to 0.5-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-1.
2022-09-20gnu: r-rrcov: Update to 1.7-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-1.
2022-09-20gnu: r-statmod: Update to 1.4.37.Ricardo Wurmus
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.37.
2022-09-20gnu: r-hmisc: Update to 4.7-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hmisc): Update to 4.7-1.
2022-09-20gnu: r-base64: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-base64): Update to 2.0.1.
2022-09-20gnu: r-tidyr: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyr): Update to 1.2.1.
2022-09-20gnu: r-viridislite: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-viridislite): Update to 0.4.1.
2022-09-20gnu: r-rsqlite: Update to 2.2.17.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.17.
2022-09-20gnu: r-gtable: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gtable): Update to 0.3.1. [native-inputs]: Add r-knitr.
2022-09-20gnu: r-rmarkdown: Update to 2.16.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.16.
2022-09-20gnu: r-rcpparmadillo: Update to 0.11.2.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.11.2.4.0.
2022-09-20gnu: r-hms: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hms): Update to 1.1.2.
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