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2019-10-07gnu: emacs-evil-nerd-commenter: Update to 3.3.8....* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.3.8. Brian Leung
2019-10-07gnu: emacs-evil-traces: Update to 0.0.1-2.1931e3e....* gnu/packages/emacs-xyz.scm (emacs-evil-traces): Update to 0.0.1-2.1931e3e. Brian Leung
2019-10-07gnu: Add emacs-peg....* gnu/packages/emacs-xyz.scm (emacs-peg): New variable. Brian Leung
2019-10-07gnu: emacs-deadgrep: Update to 0.8-2.3fc7ca1....* gnu/packages/emacs-xyz.scm (emacs-deadgrep): Update to 0.8-2.3fc7ca1. Brian Leung
2019-10-06gnu: r-variancepartition: Update to 1.14.1....* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.14.1. [propagated-inputs]: Add r-biocparallel. Ricardo Wurmus
2019-10-06gnu: r-mixomics: Update to 6.8.5....* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.5. Ricardo Wurmus
2019-10-06gnu: r-regioner: Update to 1.16.5....* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.5. Ricardo Wurmus
2019-10-06gnu: r-backports: Update to 1.1.5....* gnu/packages/statistics.scm (r-backports): Update to 1.1.5. Ricardo Wurmus
2019-10-06gnu: r-gargle: Update to 0.4.0....* gnu/packages/cran.scm (r-gargle): Update to 0.4.0. Ricardo Wurmus
2019-10-06gnu: r-rcppparallel: Update to 4.4.4....* gnu/packages/cran.scm (r-rcppparallel): Update to 4.4.4. Ricardo Wurmus
2019-10-06gnu: r-hdf5r: Update to 1.3.0....* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.0. Ricardo Wurmus
2019-10-06gnu: r-promises: Update to 1.1.0....* gnu/packages/cran.scm (r-promises): Update to 1.1.0. Ricardo Wurmus
2019-10-06gnu: r-later: Update to 1.0.0....* gnu/packages/cran.scm (r-later): Update to 1.0.0. Ricardo Wurmus
2019-10-06gnu: r-maptools: Update to 0.9-8....* gnu/packages/cran.scm (r-maptools): Update to 0.9-8. Ricardo Wurmus
2019-10-06gnu: r-htmlwidgets: Update to 1.5....* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.5. Ricardo Wurmus
2019-10-06gnu: r-htmltools: Update to 0.4.0....* gnu/packages/cran.scm (r-htmltools): Update to 0.4.0. [arguments]: Remove field. [propagated-inputs]: Add r-rlang. Ricardo Wurmus
2019-10-06gnu: r-seurat: Update to 3.1.1....* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.1. [propagated-inputs]: Add r-httr. Ricardo Wurmus
2019-10-06gnu: r-rsamtools: Update to 2.0.2....* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.2. Ricardo Wurmus
2019-10-06gnu: r-biomart: Update to 2.40.5....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.5. Ricardo Wurmus
2019-10-06gnu: emacs-helm-ag: Fix version....* gnu/packages/emacs-xyz.scm (emacs-helm-ag): Fix version. Brian Leung
2019-10-06gnu: Add emacs-helm-org....* gnu/packages/emacs-xyz.scm (emacs-helm-org): New variable. Brian Leung
2019-10-06gnu: emacs-helm: Update to 3.5.0....* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.5.0. Brian Leung
2019-10-06gnu: nss-pam-ldapd: Update to 0.9.11....* gnu/packages/openldap.scm (nss-pam-ldapd): Update to 0.9.11. [inputs]: Replace python-2 with python. Ricardo Wurmus
2019-10-06Merge branch 'master' into core-updatesRicardo Wurmus
2019-10-06gnu: Add mloop....* gnu/packages/music.scm (mloop): New variable. Ricardo Wurmus
2019-10-06gnu: guile-studio: Update to 0-2.4d63f3d....* gnu/packages/guile-xyz.scm (guile-studio): Update to 0-2.4d63f3d. Ricardo Wurmus
2019-10-06gnu: icedtea-7: Fix build on i686-linux....* gnu/packages/java.scm (icedtea-7)[arguments]: Use "i386" lib directory when the system is "i686-linux". Ricardo Wurmus
2019-10-06gnu: jamvm-1-bootstrap: Fix segfault in bootstrap JVM....* gnu/packages/java.scm (jamvm-1-bootstrap)[arguments]: Add configure flags: --disable-int-caching, --enable-runtime-reloc-checks, and --enable-ffi. [inputs]: Add libffi. Ricardo Wurmus
2019-10-06gnu: emacs-hackernews: Update to 0.5.0-2.2362d7b....* gnu/packages/emacs-xyz.scm (emacs-hackernews): Update to 0.5.0-2.2362d7b. Brian Leung
2019-10-06gnu: emacs-undo-propose-el: Update to 3.0.0-3.f80baee....* gnu/packages/emacs-xyz.scm (emacs-undo-propose-el): Update to 3.0.0-3.f80baee. Brian Leung
2019-10-06gnu: emacs-evil-mc: Update to 0.0.3-2.1cabb86....* gnu/packages/emacs-xyz.scm (emacs-evil-mc): Update to 0.0.3-2.1cabb86. Brian Leung
2019-10-06gnu: Add cl-goject-introspection....* gnu/packages/lisp.scm (cl-goject-introspection, sbcl-cl-gobject-introspection): New variables. Pierre Neidhardt
2019-10-06gnu: WebKitGTK: Embed absolute file name of libWPEBackend-fdo-1.0.so....Fixes <https://bugs.gnu.org/37545>. Reported by Vagrant Cascadian <vagrant@debian.org>. * gnu/packages/webkit.scm (webkitgtk)[arguments]: Add phase. Marius Bakke
2019-10-06gnu: linux-libre: Remove glibc from CPATH before the build....Fixes <https://bugs.gnu.org/37593>. * gnu/packages/linux.scm (make-linux-libre*)[arguments]: Drop "libc" from CPATH. Marius Bakke
2019-10-06gnu: linux-libre: Try to aggressively gather entropy during boot....Fixes <https://bugs.gnu.org/37501>. * gnu/packages/patches/linux-libre-active-entropy.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (linux-libre-5.2-source): Use it. Marius Bakke
2019-10-06gnu: perf: Treat kernel headers as system headers....* gnu/packages/linux.scm (perf)[arguments]: Instead of disabling -Werror, set C_INCLUDE_PATH. Marius Bakke
2019-10-06services: shepherd: Compile service files....This reduces resident memory for PID 1 from 29.8MiB to 28.7MiB right after boot on a bare-bones system (x86_64-linux). * gnu/services/shepherd.scm (scm->go): New procedure. (shepherd-configuration-file)[config]: Call it and use 'load-compiled' instead of 'primitive-load'. Ludovic Courtès
2019-10-06services: udev: Explicitly depend on (gnu build linux-boot)....* gnu/services/base.scm (udev-shepherd-service): Wrap 'start' method in 'with-imported-modules'. Ludovic Courtès
2019-10-06services: agetty: Explicitly depend on (gnu build linux-boot)....* gnu/services/base.scm (default-serial-port): Wrap in 'with-imported-modules'. Ludovic Courtès
2019-10-06system: Add 'mount' and 'umount' to '%setuid-programs'....Fixes <https://bugs.gnu.org/37569>. Reported by Diego Nicola Barbato <dnbarbato@posteo.de>. * gnu/system.scm (%setuid-programs): Add "mount" and "umount" from util-linux. Ludovic Courtès
2019-10-06gnu: Add cl-random-forest....* gnu/packages/machine-learning.scm (sbcl-cl-random-forest, cl-random-forest, ecl-cl-random-forest): New variables. Guillaume Le Vaillant
2019-10-06gnu: Add cl-online-learning....* gnu/packages/machine-learning.scm (sbcl-cl-online-learning, cl-online-learning, ecl-cl-online-learning): New variables. Guillaume Le Vaillant
2019-10-06gnu: Add cl-libsvm-format....* gnu/packages/machine-learning.scm (sbcl-cl-libsvm-format, cl-libsvm-format, ecl-cl-libsvm-format): New variables. Guillaume Le Vaillant
2019-10-06gnu: Add cl-store....* gnu/packages/lisp.scm (sbcl-cl-store, cl-store, ecl-cl-store): New variables. Guillaume Le Vaillant
2019-10-06gnu: sbcl-hu.dwim.asdf: Update to 20190521....* gnu/packages/lisp.scm (sbcl-hu.dwim.asdf): Update to 20190521. [uri]: Fetch more recent version from Quicklisp. Guillaume Le Vaillant
2019-10-06gnu: sbcl-alexandria: Update to 1.0.0....* gnu/packages/lisp.scm (sbcl-alexandria): Update to 1.0.0. [native-inputs]: Add rt. Guillaume Le Vaillant
2019-10-06gnu: ecl: Do not compile the deprecated MIT-RT....Compiling the rt bundled with ECL prevents the ecl-rt package from compiling properly, as ECL thinks it has already been compiled. * gnu/packages/lisp.scm (ecl)[arguments]: Add '--without-rt' to 'configure-flags'. Guillaume Le Vaillant
2019-10-06gnu: Add chanl....* gnu/packages/lisp.scm (sbcl-chanl, cl-chanl, ecl-chanl): New variables. Guillaume Le Vaillant
2019-10-06gnu: Remove rust-clippy....This was added by accident in 14f3a7e37314451b9b93d7b7536f3ae3dec1ed68. * gnu/packages/crates-io.scm (rust-clippy): Remove variable. Efraim Flashner
2019-10-06gnu: endless-sky: Update to 0.9.10....* gnu/packages/games.scm (endless-sky): Update to 0.9.10. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Timotej Lazar
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