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2017-04-06gnu: r-mgcv: Update to 1.8-17.•••* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17. Ricardo Wurmus
2017-04-06gnu: r-matrix: Update to 1.2-8.•••* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8. Ricardo Wurmus
2017-04-06gnu: r-lattice: Update to 0.20-35.•••* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35. Ricardo Wurmus
2017-04-06gnu: r-rprojroot: Update to 1.2.•••* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2. Ricardo Wurmus
2017-04-06gnu: r-htmltable: Update to 1.9.•••* gnu/packages/web.scm (r-htmltable): Update to 1.9. [propagated-inputs]: Add "r-checkmate" and "r-htmlwidgets". Ricardo Wurmus
2017-04-06gnu: r-curl: Update to 2.4.•••* gnu/packages/web.scm (r-curl): Update to 2.4. Ricardo Wurmus
2017-04-06gnu: r-genomeinfodb: Update to 1.10.3.•••* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.3. [propagated-inputs]: Add "r-rcurl". Ricardo Wurmus
2017-04-06gnu: r-xvector: Update to 0.14.1.•••* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.1. Ricardo Wurmus
2017-04-06gnu: r-bioccheck: Update to 1.10.1.•••* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.10.1. [propagated-inputs]: Remove "r-knitr" and "r-devtools". Ricardo Wurmus
2017-04-06gnu: r-tidyr: Update to 0.6.1.•••* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1. [propagated-inputs]: Add "r-tibble". Ricardo Wurmus
2017-04-06gnu: r-roxygen2: Update to 6.0.1.•••* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1. [propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2". Ricardo Wurmus
2017-04-06gnu: Add r-commonmark.•••* gnu/packages/statistics.scm (r-commonmark): New variable. Ricardo Wurmus
2017-04-06gnu: Add r-desc.•••* gnu/packages/statistics.scm (r-desc): New variable. Ricardo Wurmus
2017-04-06gnu: r-readr: Update to 1.1.0.•••* gnu/packages/statistics.scm (r-readr): Update to 1.1.0. [propagated-inputs]: Remove "r-curl". Ricardo Wurmus
2017-04-06gnu: r-tibble: Update to 1.3.0.•••* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0. [propagated-inputs]: Remove "r-assertthat". Ricardo Wurmus
2017-04-06gnu: r-jsonlite: Update to 1.3.•••* gnu/packages/web.scm (r-jsonlite): Update to 1.3. Ricardo Wurmus
2017-04-06gnu: ldc-bootstrap: Delete failing test.•••* gnu/packages/ldc.scm (ldc-bootstrap)[arguments]: Delete failing test in build phase. Ricardo Wurmus
2017-04-06gnu: guile-aspell: Switch to Guile 2.2.•••* gnu/packages/guile.scm (guile-aspell)[inputs]: Replace GUILE-2.0 with GUILE-2.2. Ludovic Courtès
2017-04-06gnu: guile-aspell: Remove hard-coded "site/2.0" from $(guilesitedir).•••* gnu/packages/guile.scm (guile-aspell)[arguments]: Remove #:configure-flags. Add 'set-guilesitedir' phase. Ludovic Courtès
2017-04-06gnu: guile-aspell: Update to 0.4.•••* gnu/packages/guile.scm (guile-aspell): Update to 0.4. [arguments] <#:phases>: Adjust 'set-libaspell-file-name' to new source tree layout. Ludovic Courtès
2017-04-06system: Support the --root option in 'guix system'.•••Fixes <https://bugs.gnu.org/26271>. * guix/scripts/system.scm (perform-action): Add #:gc-root parameter and honor it. (show-help): Document the --root option. (%options): Add 'root'. (process-action): Pass 'root' option to perform-action as #:gc-root. * doc/guix.texi (Invoking guix system): Document '--root'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Chris Marusich
2017-04-06build: Add and export procedure 'register-root*'.•••* guix/scripts/build.scm (register-root*): Add and export it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Chris Marusich
2017-04-05environment: Deal with single-entry search paths.•••This is a followup to fcd75bdbfa99d14363b905afbf914eec20e69df8. * guix/scripts/environment.scm (create-environment): Check whether SEPARATOR is #f. Ludovic Courtès
2017-04-05doc: Add "Documentation" section.•••* doc/guix.texi (Documentation): New node. Ludovic Courtès
2017-04-05profiles: Generate database file for man pages.•••The mandb database file (index.db) is used by the "apropos" (whatis) or "man -k" commands. This change introduces a profile hook to generate such database file. * guix/profiles.scm (manual-database): New procedure. (%default-profile-hooks): Add it. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Maxim Cournoyer
2017-04-05build-system/python: 'package-with-explicit-python' uses 'package-mapping'.•••* guix/build-system/python.scm (package-with-explicit-python) [package-variant, cut?]: New procedures. [transform]: Remove 'mlambdaq' form and input tuple handling. Use 'package-mapping'. Ludovic Courtès
2017-04-05packages: Add 'package-mapping' and base 'package-input-rewriting' on it.•••* guix/packages.scm (package-mapping): New procedure. (package-input-rewriting): Rewrite in terms of 'package-mapping'. * tests/packages.scm ("package-mapping"): New test. * doc/guix.texi (Defining Packages): Document it. Ludovic Courtès
2017-04-05Revert "gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'."•••This reverts commit 01fe019166fe8a925b3bf3b489792b52b1b6ca7a, which was unneeded because IlmBase is already listed as 'Requires' in 'OpenEXR.pc'. Ludovic Courtès
2017-04-05Revert "gnu: bc: Update to 1.07."•••This reverts commit dfee7daedb760f1b1d7506829ca31633f4173356. It causes the linux-libre@4.9 build to hang (command-line usage works fine). Tobias Geerinckx-Rice
2017-04-05gnu: Move audacity to audio.scm.•••* gnu/packages/audacity.scm: Remove file and move audacity... * gnu/packages/audio.scm: ...here. * gnu/local.mk: Remove reference to removed file. Kei Kebreau
2017-04-05import cran: Distinguish Bioconductor data packages.•••* guix/import/cran.scm (bioconductor-package?): Exclude Bioconductor data packages. (bioconductor-data-package?): New procedure. Ricardo Wurmus
2017-04-05gnu: sra-tools: Fix glibc naming conflict.•••* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Add build phase "patch-away-glibc-conflict" to fix a definition conflict with glibc 2.25. Ricardo Wurmus
2017-04-05gnu: sra-tools: Use "modify-phases" syntax.•••* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use "modify-phases" syntax. Ricardo Wurmus
2017-04-05gnu: diamond: Update to 0.8.37.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.37. Ben Woodcroft
2017-04-05download: Update the GnuPG mirror list.•••* guix/download.scm (%mirrors) <gnupg>: Use HTTP for TU Wien mirror. Leo Famulari
2017-04-05gnu: kdevelop: Update to 5.1.0.•••* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.1.0. Thomas Danckaert
2017-04-05gnu: bc: Update to 1.07.•••* gnu/packages/algebra.scm (bc): Update to 1.07. [native-inputs]: Add ed and texinfo. [arguments]: Use default ‘configure’ phase. Tobias Geerinckx-Rice
2017-04-05gnu: bc: Actually use readline.•••* gnu/packages/algebra.scm (bc)[arguments]: Add ‘--with-readline’ to #:configure-flags. Tobias Geerinckx-Rice
2017-04-05gnu: algebra: Re-order imports.•••* gnu/packages/algebra.scm: Order imports alphabetically. Tobias Geerinckx-Rice
2017-04-05gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'.•••* gnu/packages/graphics.scm (openexr)[arguments]: Add 'set-ilmbase-directory-in-pc-file' phase. Ludovic Courtès
2017-04-05services: cuirass: Wait for networking.•••* gnu/services/cuirass.scm (cuirass-shepherd-service): Add 'networking' to 'requirements'. Ludovic Courtès
2017-04-05build: Export register-root procedure.•••* guix/scripts/build.scm: Export register-root procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Chris Marusich
2017-04-04gnu: icecat: Use bundled ICU to avoid crashes.•••* gnu/packages/gnuzilla.scm (icecat)[arguments] <#:configure-flags>: Temporarily comment out "--with-system-icu". Clément Lassieur
2017-04-04gnu: icecat: Re-enable parallel build.•••* gnu/packages/gnuzilla.scm (icecat)[arguments]: Re-enable parallel build. Clément Lassieur
2017-04-04gnu: python-django: Specify CPE name.•••* gnu/packages/django.scm (python-django, python2-django)[properties]: Add "cpe-name". Marius Bakke
2017-04-04gnu: python-django: Update to 1.10.7 [fixes CVE-2017-7233 and CVE-2017-7234].•••* gnu/packages/django.scm (python-django, python2-django): Update to 1.10.7. Marius Bakke
2017-04-04gnu: gnupg: Update to 2.1.20.•••* gnu/packages/gnupg.scm (gnupg): Update to 2.1.20. [source]: Remove patch. * gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Marius Bakke
2017-04-04gnu: python2-cython: Fix build on 32-bit platforms.•••* gnu/packages/python.scm (python-cython, python2-cython)[source]: Add patch. * gnu/packages/patches/python-cython-fix-tests-32bit.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Marius Bakke
2017-04-04gnu: moc: Add Ogg Vorbis support.•••* gnu/packages/music.scm (moc)[inputs]: Add libogg and libvorbis. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Mark Meyer
2017-04-04gnu: Add qjackctl.•••* gnu/packages/audio.scm (qjackctl): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Mark Meyer
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