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2019-05-06gnu: Use license: prefix in shellutils.scm.•••* gnu/packages/shellutils.scm Use license: prefix in all packages. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brendan Tildesley
2019-05-06gnu: zimg: Fix license field to refer to license:wtfpl2.•••* gnu/packages/image.scm (zimg): Fix license field to refer to license:wtfpl2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brendan Tildesley
2019-05-06gnu: gcc@9: Fix limits.h include for cross builds.•••This allows us to supply gcc-9 as an optional argument to cross-gcc, successfully constructing gcc-9-based cross-compilers. * gnu/packages/gcc.scm (gcc-9)[source](patches): Add "gcc-9-asan-fix-limits-include.patch". * gnu/packages/patches/gcc-9-asan-fix-limits-include.patch: New file. * gnu/local.mk (dist_patch_DATA): Add the patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Carl Dong
2019-05-06gnu: cross-base: Apply gcc 8 patch to gcc >= 8.•••* gnu/packages/cross-base.scm (cross-gcc): Apply gcc 8 patch to gcc >= 8. * gnu/packages/patches/gcc-8-cross-environment-variables.patch: New file. * gnu/local.mk (dist_patch_DATA): Add the patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Carl Dong
2019-05-06gnu: gcc: Add 9.1.0.•••* gnu/packages/gcc.scm (gcc-9): New variable. * gnu/packages/commencement.scm (gcc-toolchain-9): New variable. * gnu/packages/patches/gcc-9-strmov-store-file-names.patch: New file. * gnu/local.mk (dist_patch_DATA): Add the patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Carl Dong
2019-05-06gnu: linux-libre: Update to 5.0.13.•••* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.13. (%linux-libre-hash): Update hash. Mark H Weaver
2019-05-06gnu: linux-libre@4.19: Update to 4.19.40.•••* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.40. (%linux-libre-4.19-hash): Update hash. Mark H Weaver
2019-05-06gnu: linux-libre@4.14: Update to 4.14.116.•••* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.116. (%linux-libre-4.14-hash): Update hash. Mark H Weaver
2019-05-06gnu: linux-libre@4.9: Update to 4.9.173.•••* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.173. Mark H Weaver
2019-05-05build: go-build-system: Follow-up to commit f42e4ebb56.•••This follows commit f42e4ebb56, which made it so that the unpack phase return value could be left unspecified. * guix/build/go-build-system.scm (unpack): Ensure that the value returned upon a successful completion of the phase is #t. Maxim Cournoyer
2019-05-05build: go-build-system: Follow-up commit.•••There was an extraneous pair of parens in commit 7e84d3eef7. Thanks for Mark Weaver for reporting the issue. * guix/build/go-build-system.scm (unpack): Remove the extraneous pair of parentheses surrounding the `display' function call. Maxim Cournoyer
2019-05-05gnu: docker: Refer to xz by its absolute path.•••* gnu/packages/docker.scm (docker)[inputs]: Add xz. [phases]{patch-paths}: Patch the reference to xz. Maxim Cournoyer
2019-05-05gnu: docker: Patch the reference to the docker proxy.•••* gnu/packages/docker.scm (docker)[inputs]: Add docker-libnetwork-cmd-proxy. * gnu/packages/docker.scm (docker)[phases]{patch-paths}: Patch proxy.go to refer to the docker-proxy binary by its absolute path. Maxim Cournoyer
2019-05-05gnu: docker: Optimize substitution macros.•••This change halves the time needed to patch the paths. * gnu/packages/docker.scm (docker)[phases]{patch-paths}: Allow passing multiple SOURCE-TEXT, PACKAGE and RELATIVE-PATH tuples so that the rewrite rules can be generated and processed by a single use of the SUBSTITUTE* macro. Rename SUBSTITUTE-LOOKPATH to SUBSTITUTE-LOOKPATH* and substitute-Command to SUBSTITUTE-COMMAND* to denote the change. Adapt the uses of SUBSTITUTE-LOOKPATH* and SUBSTITUTE-COMMAND*. Maxim Cournoyer
2019-05-05gnu: docker: Make macros use a relative path as argument.•••* gnu/packages/docker.scm (docker)[phases]: Move implementation detail inside the SUBSTITUTE-LOOKPATH and SUBSTITUTE-COMMAND macros definition, so that the relative path argument can be given as a relative path. Maxim Cournoyer
2019-05-05gnu: docker: Harmonize LookPath regexes.•••* gnu/packages/docker.scm (docker)[phases]: In the patch-paths phase, update the regexes used by SUBSTITUTE-LOOKPATH and SUBSTITUTE-COMMAND to match at the start of the word, like it's done later. Maxim Cournoyer
2019-05-05gnu: docker: Cleanup extraneous comments.•••* gnu/packages/docker.scm (docker): Remove "parenthesis-balancing" comments. Maxim Cournoyer
2019-05-05gnu: docker: Fix indentation.•••* gnu/packages/docker.scm (docker): Fix indentation using Emacs. Maxim Cournoyer
2019-05-05services: docker: Add new fields to support proxy.•••The Docker proxy enables inter-container and outside-to-container loopback, and is required by the Docker registry server. * gnu/services/docker.scm (docker-configuration)[proxy, enable-proxy?]: Add fields. (docker-shepherd-service): Use them. (serialize-boolean): New function. Maxim Cournoyer
2019-05-05gnu: Add docker-libnetwork-cmd-proxy.•••* gnu/packages/docker.scm (docker-libnetwork-cmd-proxy): New variable. Maxim Cournoyer
2019-05-05gnu: Add docker-libnetwork.•••* gnu/packages/docker.scm (docker-libnetwork): New private variable. Maxim Cournoyer
2019-05-05gnu: Add go-netlink.•••* gnu/packages/linux.scm (go-netlink): New variable. Maxim Cournoyer
2019-05-05gnu: Add go-netns.•••* gnu/packages/networking.scm (go-netns): New variable. Maxim Cournoyer
2019-05-05gnu: Add go-sctp.•••* gnu/packages/networking.scm (go-sctp): New variable. Maxim Cournoyer
2019-05-05build: go-build-system: Ensure uniform unpacking directory.•••Depending on whether the source is a directory or an archive, we strip the source directory or preserve it, respectively. This change makes it so that whether the type of the source, it is unpacked at the expected location given by the IMPORT-PATH of the Go build system. * guix/build/go-build-system.scm: Add the (ice-9 ftw) module. (unpack): Add inner procedure to maybe strip the top level directory of an archive, document it and use it. Maxim Cournoyer
2019-05-05build: go-build-system: Use WHEN for side-effect conditionals.•••* guix/build/go-build-system.scm (unpack): Replace single branch `if' by `when'. Maxim Cournoyer
2019-05-05build: go-build-system: Re-ident.•••* guix/build/go-build-system.scm (unpack): Fix indentation. Maxim Cournoyer
2019-05-06gnu: r-chippeakanno: Update to 3.18.0.•••* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.0. [propagated-inputs]: Add r-rtracklayer. Ricardo Wurmus
2019-05-06gnu: r-arrmnormalization: Update to 1.24.0.•••* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.24.0. Ricardo Wurmus
2019-05-06gnu: r-progeny: Update to 1.6.0.•••* gnu/packages/bioconductor.scm (r-progeny): Update to 1.6.0. Ricardo Wurmus
2019-05-06gnu: r-rbowtie2: Update to 1.6.0.•••* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.6.0. Ricardo Wurmus
2019-05-06gnu: r-zfpkm: Update to 1.6.0.•••* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.6.0. Ricardo Wurmus
2019-05-06gnu: r-webbioc: Update to 1.56.0.•••* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.56.0. Ricardo Wurmus
2019-05-06gnu: r-widgettools: Update to 1.62.0.•••* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.62.0. Ricardo Wurmus
2019-05-06gnu: r-wiggleplotr: Update to 1.8.0.•••* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.8.0. Ricardo Wurmus
2019-05-06gnu: r-wrench: Update to 1.2.0.•••* gnu/packages/bioconductor.scm (r-wrench): Update to 1.2.0. Ricardo Wurmus
2019-05-06gnu: r-xcms: Update to 3.6.0.•••* gnu/packages/bioconductor.scm (r-xcms): Update to 3.6.0. Ricardo Wurmus
2019-05-06gnu: r-massspecwavelet: Update to 1.50.0.•••* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.50.0. Ricardo Wurmus
2019-05-06gnu: r-xbseq: Update to 1.16.0.•••* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.16.0. Ricardo Wurmus
2019-05-06gnu: r-roar: Update to 1.20.0.•••* gnu/packages/bioconductor.scm (r-roar): Update to 1.20.0. Ricardo Wurmus
2019-05-06gnu: r-yarn: Update to 1.10.0.•••* gnu/packages/bioconductor.scm (r-yarn): Update to 1.10.0. Ricardo Wurmus
2019-05-06gnu: r-quantro: Update to 1.18.0.•••* gnu/packages/bioconductor.scm (r-quantro): Update to 1.18.0. Ricardo Wurmus
2019-05-06gnu: r-yaqcaffy: Update to 1.44.0.•••* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.44.0. Ricardo Wurmus
2019-05-06gnu: r-simpleaffy: Update to 2.60.0.•••* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.60.0. Ricardo Wurmus
2019-05-06gnu: r-gcrma: Update to 2.56.0.•••* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.56.0. Ricardo Wurmus
2019-05-06gnu: r-yapsa: Update to 1.10.0.•••* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.10.0. Ricardo Wurmus
2019-05-06gnu: r-somaticsignatures: Update to 2.20.0.•••* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.20.0. Ricardo Wurmus
2019-05-06gnu: r-gtrellis: Update to 1.16.0.•••* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.16.0. Ricardo Wurmus
2019-05-06gnu: r-yamss: Update to 1.10.0.•••* gnu/packages/bioconductor.scm (r-yamss): Update to 1.10.0. Ricardo Wurmus
2019-05-06gnu: r-ebimage: Update to 4.26.0.•••* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.26.0. Ricardo Wurmus
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