| Age | Commit message (Expand) | Author |
|---|
| 2020-06-13 | gnu: r-dexseq: Update to 1.34.0....* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.34.0.
[native-inputs]: Add r-knitr.
| Ricardo Wurmus |
| 2020-06-13 | gnu: r-deseq2: Update to 1.28.1....* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.28.1.
[propagated-inputs]: Remove r-hmisc.
[native-inputs]: Add r-knitr.
| Ricardo Wurmus |
| 2020-06-13 | gnu: r-genefilter: Update to 1.70.0....* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.70.0.
[native-inputs]: Add r-knitr.
| Ricardo Wurmus |
| 2020-06-13 | gnu: r-rgraphviz: Update to 2.32.0....* gnu/packages/graph.scm (r-rgraphviz): Update to 2.32.0.
| Ricardo Wurmus |
| 2020-06-13 | gnu: r-preprocesscore: Update to 1.50.0....* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.50.0.
| Ricardo Wurmus |
| 2020-06-13 | gnu: Add r-dot....* gnu/packages/cran.scm (r-dot): New variable.
| Ricardo Wurmus |
| 2020-06-13 | gnu: Add r-v8....* gnu/packages/cran.scm (r-v8): New variable.
| Ricardo Wurmus |
| 2020-06-13 | gnu: Add r-scatterpie....* gnu/packages/cran.scm (r-scatterpie): New variable.
| Ricardo Wurmus |
| 2020-06-13 | gnu: Add r-gprofiler2....* gnu/packages/cran.scm (r-gprofiler2): New variable.
| Ricardo Wurmus |
| 2020-06-13 | gnu: node: Build shared library....* gnu/packages/node.scm (node)[arguments]: Build shared library.
| Ricardo Wurmus |
| 2020-06-13 | guix: Update to Bioconductor 3.11....* guix/build-system/r.scm (bioconductor-uri): Use new URL.
* guix/import/cran.scm (%bioconductor-version): Update to 3.11.
| Ricardo Wurmus |
| 2020-06-13 | gnu: r-gprofiler: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-gprofiler): Move this variable from here...
* gnu/packages/cran.scm (r-gprofiler): ...to here.
| Ricardo Wurmus |
| 2020-06-12 | lint: check-patch-file-names: Use origin-actual-file-name....This avoids crashes for the patch-file-names checker where a <origin> is used
for a patch, but without a value for the file-name field. This is currently
the case with the bash package.
* guix/lint.scm (check-patch-file-names): Change origin-file-name to
origin-actual-file-name.
| Christopher Baines |
| 2020-06-12 | gnu: guile-sqlite3: Update to 0.1.1....* gnu/packages/guile.scm (guile-sqlite3): Update to 0.1.1.
[source]: Remove 'patches', 'modules', and 'snippet'.
* gnu/packages/patches/guile-sqlite3-fix-cross-compilation.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
| Ludovic Courtès |
| 2020-06-12 | git-authenticate: Disallow SHA1 (and MD5) signatures....* guix/git-authenticate.scm (commit-signing-key): Add
#:disallowed-hash-algorithms and honor it.
(authenticate-commit)[recent-commit?]: New variable.
Pass #:disallowed-hash-algorithms to 'commit-signing-key'.
* tests/git-authenticate.scm ("signed commits, SHA1 signature"): New test.
| Ludovic Courtès |
| 2020-06-12 | gnu: Add liblogging....* gnu/packages/c.scm (liblogging): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Katherine Cox-Buday |
| 2020-06-12 | gnu: Add libfastjson....* gnu/packages/c.scm (libfastjson): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Katherine Cox-Buday |
| 2020-06-12 | gnu: Add libestr....* gnu/packages/c.scm (libestr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Katherine Cox-Buday |
| 2020-06-12 | gnu: Add emacs-shell-pop....* gnu/packages/emacs-xyz.scm (emacs-shell-pop): New variable
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Ryan Desfosses |
| 2020-06-12 | download: Add more apache mirrors....* guix/download.scm (%mirrors): Add more apache mirrors.
| Efraim Flashner |
| 2020-06-12 | gnu: Fix apache mirror URIs....* gnu/packages/web.scm (serf)[source]: Remove redundant part of URI.
* gnu/packages/java.scm (ant-bootstrap, java-commons-httpclient,
java-jakarta-oro)[source]: Same.
* gnu/packages/maven.scm (maven-shared-utils, maven-plugin-annotations,
maven-wagon-provider-api, maven-artifact)[source]: Same.
| Efraim Flashner |
| 2020-06-12 | system: image: Do not produce an HFS tree when building an ISO....Use "mbr_only" mode to make sure that no HFS+ tree are generated.
* gnu/system/image.scm (system-image): Set MKRESCUE_SED_MODE to "mbr_only".
| Mathieu Othacehe |
| 2020-06-12 | gnu: xf86-input-libinput: Reduce closure size....* gnu/packages/xorg.scm (xf86-input-libinput)[inputs]: Replace libinput by
libinput-minimal.
| Pierre Neidhardt |
| 2020-06-11 | guix: lint: Support origins in check-patch-file-names....* guix/lint.scm (check-patch-file-names)[starts-with-package-name?]: New
procedure, extracted from the existing logic. Using it, add a clause to
the match-lambda to handle origin records.
| Chris Marusich |
| 2020-06-12 | gnu: icecat: Fix WebGL support....* gnu/packages/gnuzilla.scm (icecat): Wrap mesa.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
| Ekaitz Zarraga |
| 2020-06-12 | shepherd: 'read-pid-file/container' terminates the whole process group....This mirrors a change made in the Shepherd 0.8.0. Previously, upon
startup failure, we could have left processes behind.
* gnu/build/shepherd.scm (read-pid-file/container): Kill (- PID) instead
of PID.
| Ludovic Courtès |
| 2020-06-12 | shepherd: Unblock signals in the child process....Fixes <https://bugs.gnu.org/41791>.
Reported by Tobias Geerinckx-Rice <me@tobias.gr>.
This change mirrors changes made in the Shepherd 0.8.1, where signals
are blocked in the shepherd process in support of 'signalfd'. The
regression was introduced with the switch to 0.8.1 in
3f9c62d1a8b345909adaeb22f454ad22554c55a1: child processes would not
receive SIGTERM upon 'herd stop SERVICE'.
* gnu/build/shepherd.scm <top level>: Autoload (shepherd system).
(make-forkexec-constructor/container): Call call to 'sigaction' and
'unblock-signals'.
| Ludovic Courtès |
| 2020-06-11 | gnu: Add exercism and dependencies....* gnu/packages/education.scm (exercism): New variable.
* gnu/packages/patches/exercism-disable-self-update.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/golang.scm (go-github-com-spf13-afero)
(go-github-com-spf13-cast)
(go-github-com-spf13-cobra)
(go-github-com-spf13-jwalterweatherman)
(go-github-com-spf13-viper)
(go-github-com-fsnotify-fsnotify)
(go-github-com-magiconair-properties)
(go-github-com-pelletier-go-toml)
(go-github-com-subosito-gotenv)
(go-gopkg-in-ini-v1)
(go-github-com-mitchellh-mapstructure): New variables.
| Jakub Kądziołka |
| 2020-06-11 | gnu: linux-libre: Update to 5.4.46....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.46.
(linux-libre-5.4-pristine-source): Update hash.
| Mark H Weaver |
| 2020-06-11 | gnu: linux-libre@5.7: Update to 5.7.2....* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.128.
(linux-libre-5.7-pristine-source): Update hash.
| Mark H Weaver |
| 2020-06-11 | gnu: linux-libre@5.6: Remove....Users of linux-libre-5.6 should migrate to version 5.7.
* gnu/packages/linux.scm (deblob-scripts-5.6, linux-libre-5.6-version)
(linux-libre-5.6-pristine-source, linux-libre-5.6-source)
(linux-libre-headers-5.6, linux-libre-arm-generic-5.6)
(linux-libre-arm64-generic-5.6): Remove variables.
| Mark H Weaver |
| 2020-06-11 | gnu: linux-libre@4.19: Update to 4.19.128....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.128.
(linux-libre-4.19-pristine-source): Update hash.
| Mark H Weaver |
| 2020-06-11 | gnu: linux-libre@4.14: Update to 4.14.184....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.184.
(linux-libre-4.14-pristine-source): Update hash.
| Mark H Weaver |
| 2020-06-11 | gnu: linux-libre@4.9: Update to 4.9.227....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.227.
(linux-libre-4.9-pristine-source): Update hash.
| Mark H Weaver |
| 2020-06-11 | gnu: linux-libre@4.4: Update to 4.4.227....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.227.
(linux-libre-4.4-pristine-source): Update hash.
| Mark H Weaver |
| 2020-06-11 | gnu: adns: Update to 1.6.0....* gnu/packages/adns.scm (adns): Update to 1.6.0.
[source]: Use https.
[native-inputs]: Add m4.
| Efraim Flashner |
| 2020-06-11 | gnu: subversion: Update to 1.14.0....* gnu/packages/version-control.scm (subversion): Update to 1.14.0.
[source]: Update source URI.
| Efraim Flashner |
| 2020-06-11 | gnu: nghttp2: Replace with version 1.41 [fixes CVE-2020-11080]....* gnu/packages/web.scm (nghttp2-1.41): New variable.
(nghttp2)[replacement]: New field.
| Ludovic Courtès |
| 2020-06-11 | packages: 'package-grafts' returns grafts for all the relevant outputs....Fixes <https://bugs.gnu.org/41796>.
Reported by Jakub Kądziołka <kuba@kadziolka.net>.
* guix/packages.scm (input-graft): Add 'output' parameter and honor it.
Add OUTPUT to the cache key.
(input-cross-graft): Likewise.
(fold-bag-dependencies): Operate on inputs instead of nodes. Turn
VISITED into a vhash instead of a set. Pass PROC HEAD and OUTPUT
instead of just HEAD.
(bag-grafts): Adjust accordingly.
* tests/packages.scm ("package-grafts, dependency on several outputs"):
New test.
| Ludovic Courtès |
| 2020-06-11 | gnu: r-with-tests, r-minimal: Update to 4.0.1....* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.1.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-brms: Update to 2.13.0....* gnu/packages/cran.scm (r-brms): Update to 2.13.0.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-crochet: Update to 2.3.0....* gnu/packages/cran.scm (r-crochet): Update to 2.3.0.
[native-inputs]: Add r-knitr.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-openmx: Update to 2.17.4....* gnu/packages/cran.scm (r-openmx): Update to 2.17.4.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-stanheaders: Update to 2.21.0-5....* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-5.
[propagated-inputs]: Add r-rcppeigen and r-rcppparallel.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-semtools: Update to 0.5-3....* gnu/packages/cran.scm (r-semtools): Update to 0.5-3.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-sem: Update to 3.1-11....* gnu/packages/cran.scm (r-sem): Update to 3.1-11.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-emplik: Update to 1.1-1....* gnu/packages/cran.scm (r-emplik): Update to 1.1-1.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-rsvg: Update to 2.1....* gnu/packages/cran.scm (r-rsvg): Update to 2.1.
[native-inputs]: Add r-knitr.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-actuar: Update to 3.0-0....* gnu/packages/cran.scm (r-actuar): Update to 3.0-0.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-gdina: Update to 2.8.0....* gnu/packages/cran.scm (r-gdina): Update to 2.8.0.
| Ricardo Wurmus |
