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2018-03-01gnu: r-limma: Update to 3.34.9....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9. Ricardo Wurmus
2018-03-01gnu: r-edger: Update to 3.20.9....* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9. Ricardo Wurmus
2018-03-01gnu: r-shortread: Update to 1.36.1....* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1. Ricardo Wurmus
2018-03-01gnu: r-dexseq: Update to 1.24.3....* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3. Ricardo Wurmus
2018-03-01gnu: efl: Use separate "include" output....* gnu/packages/enlightenment.scm (efl)[outputs]: Add 'include' output. Efraim Flashner
2018-03-01gnu: efl: Update to 1.20.7....* gnu/packages/enlightenment.scm (efl): Update to 1.20.7. Efraim Flashner
2018-03-01gnu: Add patchmatrix....* gnu/packages/music.scm (patchmatrix): New variable. Ricardo Wurmus
2018-03-01gnu: ghc-uuid: Fix build....* gnu/packages/haskell.scm (ghc-uuid)[arguments]: Allow building with a newer version of QuickCheck. Ricardo Wurmus
2018-03-01gnu: golly: Fix source url....* gnu/packages/games.scm (golly): Fix source url. Christopher Lemmer Webber
2018-03-01gnu: imagemagick: Update to 6.9.9-36....* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-36. Marius Bakke
2018-03-01gnu: libe-book: Update to 0.1.3....* gnu/packages/libreoffice.scm (libe-book): Update to 0.1.3. [propagated-inputs]: Add LIBLANGTAG. Marius Bakke
2018-03-01gnu: libabw: Update to 0.1.2....* gnu/packages/libreoffice.scm (libabw): Update to 0.1.2. Marius Bakke
2018-03-01gnu: libpagemaker: Update to 0.0.4....* gnu/packages/libreoffice.scm (libpagemaker): Update to 0.0.4. [source](uri): Use HTTPS. Marius Bakke
2018-03-01gnu: libmspub: Update to 0.1.4....* gnu/packages/libreoffice.scm (libmspub): Update to 0.1.4. [source](uri): Use HTTPS. Marius Bakke
2018-03-01gnu: xorgproto: Update to 2018.4....* gnu/packages/xorg.scm (xorgproto): Update to 2018.4. Marius Bakke
2018-03-01gnu: cuirass: Update to aa4c778....* gnu/packages/ci.scm (cuirass): Update to aa4c778. Ludovic Courtès
2018-03-01import: cpan: Drop "v" prefix from version strings....Fixes <https://bugs.gnu.org/30641>. Reported by Oleg Pykhalov <go.wigust@gmail.com>. * guix/import/cpan.scm (cpan-version): Drop the "v" prefix when it is there. Ludovic Courtès
2018-03-01gnu: nautilus: Use meson-build-system, update to 3.26.2....* gnu/packages/gnome.scm (nautilus): Update to 3.26.2. [build-system]: Use meson-build-system. [native-inputs]: Add desktop-file-utils and gtk+:bin. [inputs]: Add libselinux. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Rene
2018-03-01profiles: 'manifest-add' truly deletes duplicate entries....Fixes <https://bugs.gnu.org/30569>. Reported by Andreas Enge <andreas@enge.fr>. * guix/profiles.scm (manifest-add): Don't append ENTRIES as is. Instead, cons each element of ENTRIES as we fold over it. Remove unneeded ellispes in 'match' patterns. Ludovic Courtès
2018-02-28gnu: Fix Borg crashes with Python msgpack > 0.5...The Python msgpack library changed its name, but borg (and possibly other packages) still uses the old name. Fixes <https://bugs.gnu.org/30662>. * gnu/packages/python.scm (python-msgpack-transitional): New variable. * gnu/packages/backup.scm (borg)[inputs]: Use it. Leo Famulari
2018-02-28gnu: Remove duplicate definition of emacs-esxml....* gnu/packages/emacs.scm (emacs-esxml): Remove. Ricardo Wurmus
2018-02-28gnu: Remove emacs-nov....The package already exists with the name "emacs-nov-el". * gnu/packages/emacs.scm (emacs-nov): Remove. Ricardo Wurmus
2018-02-28gnu: java-bouncycastle-bcpkix: Use invoke....* gnu/packages/java.scm (java-bouncycastle-bcpkix)[arguments]: Use invoke. Ricardo Wurmus
2018-02-28gnu: java-bouncycastle-bcprov: Use invoke....* gnu/packages/java.scm (java-bouncycastle-bcprov)[arguments]: Use invoke. Ricardo Wurmus
2018-02-28gnu: java-lz4: Use invoke....* gnu/packages/java.scm (java-lz4)[arguments]: Use invoke. Ricardo Wurmus
2018-02-28gnu: antlr3-3.1: Remove version from package name....* gnu/packages/java.scm (antlr3-3.1)[name]: Remove. [arguments]: Adjust accordingly. Ricardo Wurmus
2018-02-28gnu: antlr3-3.1: Use invoke....* gnu/packages/java.scm (antlr3-3.1)[arguments]: Use invoke. Ricardo Wurmus
2018-02-28gnu: java-jansi-native: Simplify....* gnu/packages/java.scm (java-jansi-native)[arguments]: Use "invoke"; remove useless "mkdir-p". Ricardo Wurmus
2018-02-28gnu: java-jansi-native: Fix description....* gnu/packages/java.scm (java-jansi-native)[description]: Replace placeholder text with an actual description. Ricardo Wurmus
2018-02-28gnu: java-hawtjni: Simplify build phases....* gnu/packages/java.scm (java-hawtjni)[arguments]: Use "invoke" instead of "system*"; use "install-file" instead of "mkdir-p" and "copy-file". Ricardo Wurmus
2018-02-28gnu: java-commons-jexl-2: Use invoke....* gnu/packages/java.scm (java-commons-jexl-2)[arguments]: Use invoke. Ricardo Wurmus
2018-02-28gnu: java-jnacl: Do not prefix jar with "java-"....* gnu/packages/java.scm (java-jnacl)[arguments]: Rename jar to "jnacl.jar". Ricardo Wurmus
2018-02-28gnu: java-jnacl: Update to 0.1.0-2.094e819....* gnu/packages/java.scm (java-jnacl): Update to 0.1.0-2.094e819. Ricardo Wurmus
2018-02-28gnu: java-jnacl: Simplify build phase....* gnu/packages/java.scm (java-jnacl)[arguments]: Simplify "fix-tests" phase. Ricardo Wurmus
2018-02-28gnu: java-jnacl: Correct license....* gnu/packages/java.scm (java-jnacl)[license]: Change to BSD-2. Ricardo Wurmus
2018-02-28gnu: java-jnacl: Use invoke....* gnu/packages/java.scm (java-jnacl)[arguments]: Use "invoke". Ricardo Wurmus
2018-02-28gnu: Add java-ecj-3.5....* gnu/packages/java.scm (java-ecj-3.5): New variable. Ricardo Wurmus
2018-02-28gnu: Add java-ecj-3....* gnu/packages/java.scm (java-ecj-3): New variable. Ricardo Wurmus
2018-02-28gnu: dovecot: Update to 2.3.0.1 [fixes CVE-2017-14461]....* gnu/packages/mail.scm (dovecot): Update to 2.3.0.1. [source]: Remove upstreamed patch. * gnu/packages/patches/dovecot-CVE-2017-15132.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-02-28gnu: html-xml-utils: Update to 7.6....* gnu/packages/xml.scm (html-xml-utils): Update to 7.6. Tobias Geerinckx-Rice
2018-02-28gnu: libftdi: Update to 1.4....* gnu/packages/libftdi.scm (libftdi): Update to 1.4. Tobias Geerinckx-Rice
2018-02-28gnu: git-remote-gcrypt: Update to 1.0.2....* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.0.2. Tobias Geerinckx-Rice
2018-02-28gnu: dropbear: Update to 2018.76....* gnu/packages/ssh.scm (dropbear): Update to 2018.76. Tobias Geerinckx-Rice
2018-02-28gnu: Add sala....* gnu/packages/password-utils.scm (sala): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Konrad Hinsen
2018-02-28linux-modules: Use 'load-linux-module/fd'....This should be more efficient than loading the whole thing in user space. * gnu/build/linux-modules.scm (load-linux-module*): Use 'load-linux-module/fd' instead of 'load-linux-module'. Remove 'slurp'. Ludovic Courtès
2018-02-28gnu: guile-static-stripped: Add 'finit_module' wrapper....* gnu/packages/patches/guile-linux-syscalls.patch: Add 'load-linux-module/fd' procedure. Ludovic Courtès
2018-02-28gnu: guile-static-stripped: Remove dependency on bash-minimal....Previously guile-static-stripped, which is embedded in the initrd, would depend on 'bash-minimal' and 'glibc'; the closure size was 77 MiB. Now the closure size is down to 45.7 MiB. Reported by Danny Milosavljevic <dannym@scratchpost.org> in <https://lists.gnu.org/archive/html/guix-devel/2018-02/msg00505.html>. * gnu/packages/make-bootstrap.scm (%guile-static): Remove the 'pre-configure' phase. (%guile-static-stripped)[arguments]: Add #:allowed-references. Ludovic Courtès
2018-02-28build-system/trivial: Add support for #:allowed-references....* guix/build-system/trivial.scm (lower): Add #:allowed-references and keep it in the 'arguments' field. (trivial-build): Add #:allowed-references. Add 'canonicalize-reference'. Pass #:allowed-references to 'build-expression->derivation'. (trivial-cross-build): Likewise. * tests/packages.scm ("trivial with #:allowed-references"): New test. Ludovic Courtès
2018-02-28gnu: ccl: Patch absolute file-name....* gnu/packages/lisp.scm (ccl)[arguments]: In 'pre-build add substitution for /bin/pwd. Efraim Flashner
2018-02-28gnu: keepassxc: Enable various plugins....* gnu/packages/password-utils.scm (keepassxc)[arguments]: Add configure-flags to enable favicons, browser integration and ssh-agent. [inputs]: Add curl, libsodium. Efraim Flashner
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