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2019-06-20gnu: glibmm: Update to 2.58.0....* gnu/packages/glib.scm (glibmm): Update to 2.58.0. Ricardo Wurmus
2019-06-20gnu: gobject-introspection: Update to 1.58.1....* gnu/packages/glib.scm (gobject-introspection): Update to 1.58.1. [source]: Remove snippet. [arguments]: Add phase "do-not-use-/usr/bin/env". [inputs]: Replace python-2 with python-wrapper; add zlib. [native-inputs]: Add autoconf and automake to be able to keep using the gnu-build-system. * gnu/packages/patches/gobject-introspection-cc.patch: Update patch to apply to latest version. Ricardo Wurmus
2019-06-20gnu: glib: Update to 2.58.1....* gnu/packages/glib.scm (glib): Update to 2.58.1. [build-system]: Use meson-build-system. [outputs]: Remove "doc" as the documentation files are no longer included. [inputs]: Move libffi, util-linux, and zlib from here... [propagated-inputs]: ...to here; add libselinux. [arguments]: Remove key "disallowed-references" as it is not supported by the meson-build-system; delete "bootstrap" phase to prevent use of autotools; adjust "pre-build" phase; move "disable-failing-tests" phase after "unpack"; disable two more tests in "disable-failing-tests" phase; add phase "move-executables"; remove configure flags. Ricardo Wurmus
2019-06-20gnu: python: Allow building on low-memory systems....* gnu/packages/python.scm (python-3.7)[source]: Delete memory-intensive test. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Jeremiah@pdp10.guru
2019-06-20gnu: expat: Update to 2.2.7....* gnu/packages/xml.scm (expat): Update to 2.2.7. [source](uri): Use XZ compressed archive. Marius Bakke
2019-06-20gnu: xorgproto: Update to 2019.1....* gnu/packages/xorg.scm (xorgproto): Update to 2019.1. Marius Bakke
2019-06-20gnu: libxi: Update to 1.7.10....* gnu/packages/xorg.scm (libxi): Update to 1.7.10. Marius Bakke
2019-06-20gnu: isl: Update to 0.21....* gnu/packages/gcc.scm (isl): Update to 0.21. Marius Bakke
2019-06-20gnu: isl: Fix fallback URL....* gnu/packages/gcc.scm (isl, isl-0.18, isl-0.11)[source](uri): Use '.bz2' tarball. Marius Bakke
2019-06-20gnu: ncurses: Update to 6.1-20190909....* gnu/packages/ncurses.scm (ncurses): Update to 6.1-20190609. [arguments]: Reinstate 'apply-rollup-patch' phase. Move 'remove-unneeded-shebang' phase later to prevent conflict with patch. [native-inputs]: Add "rollup-patch" origin. Marius Bakke
2019-06-20gnu: commencement: Return #t from all phases....While at it, remove useless (and ...) indirections, because the procedures never return #f anyway: instead they would raise an exception upon failure. * gnu/packages/commencement.scm (mes-boot, tcc-boot0, tcc-boot, diffutils-mesboot, binutils-mesboot0, gcc-core-mesboot, gcc-mesboot0, glibc-headers-mesboot, glibc-mesboot, gnu-make-boot0): Return #t from phases and remove (and ...) blocks. Marius Bakke
2019-06-20gnu: meson: Update to 0.51.0....* gnu/packages/build-tools.scm (meson): Update to 0.51.0. Marius Bakke
2019-06-20gnu: util-linux: Update to 2.34....* gnu/packages/linux.scm (util-linux): Update to 2.34. Marius Bakke
2019-06-20gnu: libx11: Update to 1.6.8....* gnu/packages/xorg.scm (libx11): Update to 1.6.8. Marius Bakke
2019-06-20gnu: Replace uses of 'cmake' with 'cmake-minimal'....This follows up commit 2f33a7321e5e37d37f57c229c8079cb4ffd10834 which introduced a new CMAKE-MINIMAL variant for use in package inputs. * gnu/packages/databases.scm (python-pyarrow)[native-inputs]: Replace CMAKE with CMAKE-MINIMAL. * gnu/packages/emacs-xyz.scm (emacs-scel)[native-inputs]: Likewise. * gnu/packages/firmware.scm (ath9k-htc-firmware)[native-inputs]: Likewise. * gnu/packages/games.scm (0ad, the-butterfly-effect)[native-inputs]: Likewise. * gnu/packages/gnome.scm (deja-dup)[native-inputs]: Likewise. * gnu/packages/ibus.scm (ibus-rime)[native-inputs]: Likewise. * gnu/packages/rust.scm (rust-1.19)[native-inputs]: Likewise. * gnu/packages/simulation.scm (fenics)[native-inputs]: Likewise. * gnu/packages/squirrel.scm (squirrel)[native-inputs]: Likewise. * gnu/packages/video.scm (handbrake)[native-inputs]: Likewise. * gnu/packages/virtualization.scm (xen)[native-inputs]: Likewise. * gnu/packages/vulkan.scm (shaderc)[native-inputs]: Likewise. Marius Bakke
2019-06-20packages: Retain version in file name when repacking source checkouts....Fixes <https://bugs.gnu.org/34066>. * guix/packages.scm (patch-and-repack)<tarxz-name>: If FILE-NAME is a source checkout, reuse the name without the '-checkout' part. Marius Bakke
2019-06-20gnu: dbus: Update to 1.12.16....* gnu/packages/patches/dbus-CVE-2019-12749.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/glib.scm (dbus): Update to 1.12.16. [replacement]: Remove. (dbus/fixed): Remove variable. Marius Bakke
2019-06-20Merge branch 'staging' into core-updatesMarius Bakke
2019-06-20gnu: python-sphinx: Update to 2.1.2....* gnu/packages/sphinx.scm (python-sphinx): Update to 2.1.2. Marius Bakke
2019-06-20Merge branch 'master' into stagingMarius Bakke
2019-06-20gnu: ungoogled-chromium: Disable parallel build....* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Set #:parallel-build? #f. Adjust 'build' phase to account for it. Marius Bakke
2019-06-20gnu: samba: Update to 4.10.5 [fixes CVE-2019-12435, CVE-2019-12436]....* gnu/packages/samba.scm (samba): Update to 4.10.5. Marius Bakke
2019-06-20gnu: ungoogled-chromium: Update to 75.0.3770.100-0.5d8abc3....* gnu/packages/chromium.scm (%chromium-version): Set to 75.0.3770.100. (%chromium-origin): Update hash. Marius Bakke
2019-06-20gnu: openh264: Update to 2.0.0....* gnu/packages/video.scm (openh264): Update to 2.0.0. [source](uri): Adjust file name. Marius Bakke
2019-06-20gnu: ungoogled-chromium: Install icons....* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Install icons. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Alex Griffin
2019-06-20gnu: Use HTTPS for sphinx-doc.org....* gnu/packages/sphinx.scm (python-sphinx, python-sphinxcontrib-websupport)[home-page]: Use HTTPS. Marius Bakke
2019-06-20gnu: python-unidecode: Update to 1.1.0....* gnu/packages/python-xyz.scm (python-unidecode): Update to 1.1.0. Marius Bakke
2019-06-20gnu: dbus: Fix CVE-2019-12749....* gnu/packages/patches/dbus-CVE-2019-12749.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/glib.scm (dbus)[replacement]: New field. (dbus/fixed): New variable. Marius Bakke
2019-06-20gnu: pigx-rnaseq: Update to 0.0.7....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.7. [inputs]: Add coreutils and sed. Ricardo Wurmus
2019-06-20licenses: Add Historical Permission Notice and Disclaimer license...* gnu/licenses.scm (hpnd): New variable. Giovanni Biscuolo
2019-06-20gnu: Add iml....* gnu/packages/algebra.scm (iml): New variable. Andreas Enge
2019-06-20gnu: Add ppl....* gnu/packages/maths.scm (ppl): New variable. Andreas Enge
2019-06-20services: opensmtpd: Extend the PAM service....* gnu/services/mail.scm (%opensmtpd-pam-services): New variable. (opensmtpd-service-type)[extensions]: Add it, extending PAM-ROOT-SERVICE-TYPE. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Kristofer Buffington
2019-06-20gnu: ngs-sdk: Update to 2.9.6....* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.6. Ricardo Wurmus
2019-06-20gnu: sra-tools: Update to 2.9.6....* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.6. Ricardo Wurmus
2019-06-20gnu: ncbi-vdb: Update to 2.9.6....* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.6. [arguments]: Pass HAVE_HDF5 make flag; add build phase "patch-krypto-flags". Ricardo Wurmus
2019-06-20import: hackage: Add two expected failing test cases....This adds failing test cases for two hackage import bugs: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25138 https://debbugs.gnu.org/cgi/bugreport.cgi?bug=35743 * tests/hackage.scm: Make comment style consistent. Add two cabal parsing tests, marked as expected failures. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Robert Vollmert
2019-06-20utils: canonical-newline-port: Fix handling of carriage return at buffer end....Prior to this change the added test fails for me locally at byte 1024. It might depend on some default buffer sizes. Fixes <https://bugs.gnu.org/35863>. * tests/utils.scm ("canonical-newline-port-1024"): Add test. * guix/utils.scm (canonical-newline-port): Correct comments on CR/LF. Remove CR even when they're at the end of the buffer. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Robert Vollmert
2019-06-20gnu: guile: Add 2.2.5....* gnu/packages/guile.scm (guile-2.2.5): New variable. Ludovic Courtès
2019-06-20gnu: python-jupyter-console: Update to 6.0.0....* gnu/packages/python-xyz.scm (python-jupyter-console): Update to 6.0.0. [arguments]: Enable tests. [propagated-inputs]: Replace python-prompt-toolkit-1 with python-prompt-toolkit. Ricardo Wurmus
2019-06-20gnu: python2-jupyter-console: Split from python-jupyter-console....* gnu/packages/python-xyz.scm (python2-jupyter-console): Implement without package-with-python2. Ricardo Wurmus
2019-06-20Revert "gnu: Add libgd."...This reverts commit 059e4c9a15b52f7e4b262e3317eac238bf53103d. Nicolas Goaziou
2019-06-20gnu: Add lrcalc....* gnu/packages/algebra.scm (lrcalc): New variable. Andreas Enge
2019-06-20gnu: Add eclib....* gnu/packages/algebra.scm (eclib): New variable. Andreas Enge
2019-06-20gnu: Add m4rie....* gnu/packages/algebra.scm (m4rie): New variable. Andreas Enge
2019-06-20gnu: weechat: update to 2.5...* gnu/packages/irc.scm (weechat): update to 2.5 Signed-off-by: Gábor Boskovits <boskovits@gmail.com> Josh Holland
2019-06-20gnu: Add python-fpylll....* gnu/packages/algebra.scm (python-fpylll): New variable. Nicolas Goaziou
2019-06-20gnu: fplll: Update to 5.2.1....* gnu/packages/algebra.scm (fplll): Update to 5.2.1. [source]: Use Github tagged release: the original tarball no longer exists. [native-inputs]: Add Autoconf and al. [homepage]: Update it, the previous one no longer exists. [description]: Expound description. Nicolas Goaziou
2019-06-20services: Fix typo in (gnu services mail) exports....* gnu/services/mail.scm (define-module): Re-spell ‘%default-imap4d-config-file’. Tobias Geerinckx-Rice
2019-06-20gnu: Add symmetrica....* gnu/packages/algebra.scm (symmetrica): New variable. * gnu/packages/patches/symmetrica-bruch.patch: * gnu/packages/patches/symmetrica-int32.patch: * gnu/packages/patches/symmetrica-return_values.patch: * gnu/packages/patches/symmetrica-sort_sum_rename.patch: New files. * gnu/local.mk (dist_patch_DATA): Add patches. Nicolas Goaziou
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