| Age | Commit message (Expand) | Author |
|---|
| 2018-06-14 | database: Fail registration when encountering unregistered references.•••* guix/store/database.scm (add-reference-sql): Remove nested SELECT.
(add-references): Expect REFERENCES to be a list of ids.
(sqlite-register): Call 'path-id' for each of REFERENCES and pass it to
'add-references'.
* tests/store-database.scm ("register-path with unregistered references"):
New test.
| Ludovic Courtès |
| 2018-06-14 | database: 'with-database' can now initialize new databases.•••* nix/libstore/schema.sql: Rename to...
* guix/store/schema.sql: ... this.
* Makefile.am (nobase_dist_guilemodule_DATA): Add it.
* nix/local.mk (%D%/libstore/schema.sql.hh): Adjust accordingly.
* guix/store/database.scm (sql-schema): New variable.
(sqlite-exec, initialize-database, call-with-database): New procedures.
(with-database): Rewrite in terms of 'call-with-database'.
* tests/store-database.scm ("new database"): New test.
* guix/self.scm (compiled-guix)[*core-modules*]: Add 'schema.sql' to
#:extra-files.
| Ludovic Courtès |
| 2018-06-14 | gnu: libgcrypt: Fix CVE-2018-0495.•••* gnu/packages/gnupg.scm (libgcrypt)[replacement]: New field.
(libgcrypt/fixed): New package.
| Efraim Flashner |
| 2018-06-14 | gnu: Add python-dns-lexicon.•••* gnu/packages/python.scm (python-dns-lexicon, python2-dns-lexicon): New
variables.
| Clément Lassieur |
| 2018-06-14 | gnu: Add python-pynamecheap.•••* gnu/packages/python.scm (python-pynamecheap, python2-pynamecheap): New
variables.
| Clément Lassieur |
| 2018-06-14 | gnu: Add python-tldextract.•••* gnu/packages/python.scm (python-tldextract, python2-tldextract): New
variables.
| Clément Lassieur |
| 2018-06-14 | gnu: Add python-requests-file.•••* gnu/packages/python.scm (python-requests-file, python2-requests-file): New
variables.
| Clément Lassieur |
| 2018-06-14 | gnu: Add tmate.•••* gnu/packages/terminals.scm (tmate): New variable.
| Arun Isaac |
| 2018-06-14 | services: tor: Mark end of auto-generated configuration block.•••* gnu/services/networking.scm (tor-configuration->torrc): Clearly
demarcate auto-generated lines.
| Tobias Geerinckx-Rice |
| 2018-06-14 | Fix typo in (gnu packages gtk) header.•••* gnu/packages/gtk.scm: Fix ‘Coypright’ typo.
| Tobias Geerinckx-Rice |
| 2018-06-14 | gnu: python-gnupg: Return #t from phase.•••* gnu/packages/gnupg.scm (python-gnupg)[arguments]: Substitute INVOKE
for SYSTEM*.
| Tobias Geerinckx-Rice |
| 2018-06-14 | gnu: python-gnupg: Update to 0.4.3.•••* gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.3.
[arguments]: Remove obsolete substitution.
| Tobias Geerinckx-Rice |
| 2018-06-14 | gnu: sssd: Update to 1.16.2.•••* gnu/packages/sssd.scm (sssd): Update to 1.16.2.
[native-inputs]: Add libxml2.
| Tobias Geerinckx-Rice |
| 2018-06-13 | pull: Add '--list-generations'.•••* guix/scripts/pull.scm (show-help, %options): Add '--list-generations'.
(display-profile-content, process-query): New procedures.
(guix-pull): Honor '--list-generations'.
| Ludovic Courtès |
| 2018-06-13 | gnu: pigx-scrnaseq: Update to 0.0.5.•••* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.5.
[inputs]: Add python-magic.
| Ricardo Wurmus |
| 2018-06-13 | gnu: emacs-orgalist: Update to 1.8.•••* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.8.
| Nicolas Goaziou |
| 2018-06-13 | gnu: emacspeak: Update to 48.0.•••* gnu/packages/emacs.scm (emacspeak): Update to 48.0.
[arguments]: Use 'invoke'. In the 'install' phase, add additional
installation directories and fix the launch script substitution.
[inputs]: Add emacs and perl.
[native-inputs]: Remove emacs-minimal.
| Kei Kebreau |
| 2018-06-13 | nls: Update 'fr' translation. | Julien Lepiller |
| 2018-06-13 | gnu: r-factoextra: Fix syntax error.•••* gnu/packages/cran.scm (r-factoextra)[description]: Fix syntax error.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-seurat: Update to 2.3.2.•••* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.2.
[propagated-inputs]: Add r-hdf5r.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-s4vectors: Update to 0.18.3.•••* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.3.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-biocviews: Update to 1.48.1.•••* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.1.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-rjson: Update to 0.2.20.•••* gnu/packages/web.scm (r-rjson): Update to 0.2.20.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-zoo: Update to 1.8-2.•••* gnu/packages/statistics.scm (r-zoo): Update to 1.8-2.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-rmarkdown: Update to 1.10.•••* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.10.
[propagated-inputs]: Add r-tinytex.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-highr: Update to 0.7.•••* gnu/packages/statistics.scm (r-highr): Update to 0.7.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-stringi: Update to 1.2.3.•••* gnu/packages/statistics.scm (r-stringi): Update to 1.2.3.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-munsell: Update to 0.5.0.•••* gnu/packages/statistics.scm (r-munsell): Update to 0.5.0.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-rgooglemaps: Update to 1.4.2.•••* gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.2.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-reticulate: Update to 1.8.•••* gnu/packages/cran.scm (r-reticulate): Update to 1.8.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-later: Update to 0.7.3.•••* gnu/packages/cran.scm (r-later): Update to 0.7.3.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-radiant-data: Update to 0.9.5.•••* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.5.
[propagated-inputs]: Remove r-plyr; add r-glue, r-plotly, r-readxl, r-rlang,
and r-writexl.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-cubature: Update to 1.3-13.•••* gnu/packages/cran.scm (r-cubature): Update to 1.3-13.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-extradistr: Update to 1.8.9.•••* gnu/packages/cran.scm (r-extradistr): Update to 1.8.9.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-statnet-common: Update to 4.1.2.•••* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.2.
[propagated-inputs]: Add r-coda.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-stringdist: Update to 0.9.5.1.•••* gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.1.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-rcpproll: Update to 0.3.0.•••* gnu/packages/cran.scm (r-rcpproll): Update to 0.3.0.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-extremes: Update to 2.0-9.•••* gnu/packages/cran.scm (r-extremes): Update to 2.0-9.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-sp: Update to 1.3-1.•••* gnu/packages/cran.scm (r-sp): Update to 1.3-1.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-getoptlong: Update to 0.1.7.•••* gnu/packages/cran.scm (r-getoptlong): Update to 0.1.7.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-circlize: Update to 0.4.4.•••* gnu/packages/cran.scm (r-circlize): Update to 0.4.4.
| Ricardo Wurmus |
| 2018-06-13 | gnu: r-globaloptions: Update to 0.1.0.•••* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.0.
| Ricardo Wurmus |
| 2018-06-13 | gnu: Add r-writexl.•••* gnu/packages/cran.scm (r-writexl): New variable.
| Ricardo Wurmus |
| 2018-06-13 | gnu: Add r-hdf5r.•••* gnu/packages/cran.scm (r-hdf5r): New variable.
| Ricardo Wurmus |
| 2018-06-13 | gnu: Add r-nbclust.•••* gnu/packages/cran.scm (r-nbclust): New variable.
| Ricardo Wurmus |
| 2018-06-13 | gnu: Add r-factoextra.•••* gnu/packages/cran.scm (r-factoextra): New variable.
| Ricardo Wurmus |
| 2018-06-13 | gnu: Add r-factominer.•••* gnu/packages/cran.scm (r-factominer): New variable.
| Ricardo Wurmus |
| 2018-06-13 | gnu: Add r-flashclust.•••* gnu/packages/cran.scm (r-flashclust): New variable.
| Ricardo Wurmus |
| 2018-06-13 | gnu: Add r-ellipse.•••* gnu/packages/cran.scm (r-ellipse): New variable.
| Ricardo Wurmus |
| 2018-06-13 | gnu: Add r-ggpubr.•••* gnu/packages/cran.scm (r-ggpubr): New variable.
| Ricardo Wurmus |
