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2020-11-24gnu: imp: Migrate to Python 3.Maxim Cournoyer
* gnu/packages/bioinformatics.scm (imp) [arguments]: Enable tests by removing the #:tests? argument. Specify the arguments to pass to the ctest test running via the #:configure-flags argument. [inputs]: Add cgal and opencv. Remove python-2. Move swig to... [native-inputs]: ...here. Add python-wrapper. [propagated-inputs]: Replace python2-numpy, python2-scipy, python2-pandas, python2-scikit-learn and python2-networkx by python-numpy, python-scipy, python-pandas, python-scikit-learn and python-networkx, respectively.
2020-11-24gnu: cmake: Update to 3.19.0.Maxim Cournoyer
* gnu/packages/cmake.scm (cmake): Update to 3.19.0. [source]: Modify inherited source to adjust the hash as well as the snippet so that the "Utilities/cm3p" sub-directory is preserved. [phases]{patch-bin-sh, check}: Temporarily overrides until the next rebuild cycle.
2020-11-24gnu: python-mamba: Update to 0.11.2.Tanguy Le Carrour
* gnu/packages/python-xyz.scm (python-mamba): Update to 0.11.2. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2020-11-24gnu: python-isbnlib: Update to 3.10.4.Tanguy Le Carrour
* gnu/packages/python-xyz.scm (python-isbnlib): Update to 3.10.4. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2020-11-24doc: Fix a typo in WebSSH configuration documentation.Oleg Pykhalov
* doc/guix.texi (Networking Services): Fix a typo in webssh-configuration.
2020-11-23gnu: ghc-text-short: Fix spelling.Vagrant Cascadian
* gnu/packages/haskell-xyz (ghc-text-short): Fix spelling of "similar".
2020-11-23gnu: bsd-games: Fix spelling.Vagrant Cascadian
* gnu/packages/games (bsd-games)[description]: Fix spelling of "chosen".
2020-11-23gnu: emacs-frame-local: Fix typo.Vagrant Cascadian
* gnu/packages/emacs-xyz (emacs-frame-local)[description]: Fix grammar of "This package".
2020-11-23Merge branch 'master' into stagingMarius Bakke
2020-11-23gnu: ungoogled-chromium: Update to 87.0.4280.66-0.1f7cdef.Marius Bakke
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 87. (arch-patch, %arch-revision, %arch-patches): Remove. (ungoogled-chromium-snippet): Remove %ARCH-PATCHES. (%ungoogled-revision): Set to 1f7cdef6dfa8f612afde8f988131f210612333e0. (%chromium-version): Set to 87.0.4280.66. (ungoogled-chromium)[source]: Update hash. [arguments]: Adjust #:configure-flags for changes in 87. Enable Pipewire support in WebRTC. [native-inputs]: Add WAYLAND. [inputs]: Add PIPEWIRE and WAYLAND. (ungoogled-chromium/wayland): Implement as a wrapper over UNGOOGLED-CHROMIUM. * gnu/packages/patches/ungoogled-chromium-system-nspr.patch: Adjust for 87.
2020-11-23Merge branch 'version-1.2.0'Ludovic Courtès
2020-11-23gnu: mujs: Omit static library.Tobias Geerinckx-Rice
* gnu/packages/javascript.scm (mujs)[arguments]: Replace the default 'install phase which would install (only) the static library.
2020-11-23gnu: mujs: Cross-compile.Tobias Geerinckx-Rice
* gnu/packages/javascript.scm (mujs)[arguments]: Use CC-FOR-TARGET.
2020-11-23gnu: mujs: Update to 1.0.9.Tobias Geerinckx-Rice
* gnu/packages/javascript.scm (mujs): Update to 1.0.9.
2020-11-23gnu: mujs: Fetch sources from git.Tobias Geerinckx-Rice
* gnu/packages/javascript.scm (mujs)[source]: GIT-FETCH the sources directly from the author. [arguments]: Add VERSION to #:make-flags.
2020-11-23gnu: gpodder: Update to 3.10.17.Tobias Geerinckx-Rice
* gnu/packages/gpodder.scm (gpodder): Update to 3.10.17.
2020-11-23gnu: snd: Update to 20.9.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (snd): Update to 20.9.
2020-11-23gnu: libraqm: Update to 0.7.1.Tobias Geerinckx-Rice
* gnu/packages/fontutils.scm (libraqm): Update to 0.7.1.
2020-11-23gnu: djview: Update to 4.12.Tobias Geerinckx-Rice
* gnu/packages/djvu.scm (djview): Update to 4.12.
2020-11-23gnu: mtpaint: Update to 3.49.33.Tobias Geerinckx-Rice
* gnu/packages/image.scm (mtpaint): Update to 3.49.33.
2020-11-23gnu: guile-chickadee: Use Guile 3.0.David Thompson
* gnu/packages/game-development.scm (guile-chickadee): Change Guile inputs to use 3.0 package variants.
2020-11-24gnu: Add emacs-undo-fu-session.Niklas Eklund
* gnu/packages/emacs-xyz.scm (emacs-undo-fu-session): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2020-11-24gnu: Add emacs-embark.Niklas Eklund
* gnu/packages/emacs-xyz.scm (emacs-embark): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2020-11-23gnu: eigen: Add upstream bugfix patch.Tobias Geerinckx-Rice
This fixes the build of nanopolish, imp, and others. Reported by apteryx in #guix. * gnu/packages/algebra.scm (eigen)[source]: Add patch. * gnu/packages/patches/eigen-remove-openmp-error-counting.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-23gnu: parallel: Update to 20201122.Tobias Geerinckx-Rice
* gnu/packages/parallel.scm (parallel): Update to 20201122.
2020-11-23gnu: Add emacs-orderless.Niklas Eklund
* gnu/packages/emacs-xyz.scm (emacs-orderless): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2020-11-23gnu: guile-chickadee: Update to 0.6.0.David Thompson
2020-11-23gnu: Deprecate guile3.0-chickadee.David Thompson
2020-11-23gnu: Add cwltool.Efraim Flashner
* gnu/packages/bioinformatics.scm (cwltool): New variable.
2020-11-23gnu: Add python-shellescape.Efraim Flashner
* gnu/packages/python-xyz.scm (python-shellescape): New variable.
2020-11-23gnu: Add python-arcp.Efraim Flashner
* gnu/packages/python-xyz.scm (python-arcp): New variable.
2020-11-23gnu: Add python-schema-salad.Efraim Flashner
* gnu/packages/bioinformatics.scm (python-schema-salad): New variable.
2020-11-23gnu: Add python-cachecontrol-0.11.Efraim Flashner
* gnu/packages/python-web.scm (python-cachecontrol-0.11): New variable.
2020-11-23gnu: Add python-prov.Efraim Flashner
* gnu/packages/python-xyz.scm (python-prov): New variable.
2020-11-23gnu: Add python-bagit.Efraim Flashner
* gnu/packages/python-xyz.scm (python-bagit): New variable.
2020-11-23gnu: python-pydot: Update home-page URI.Efraim Flashner
* gnu/packages/graphviz.scm (python-pydot)[home-page]: Update to new home-page URI.
2020-11-23gnu: python-pydot: Run tests.Efraim Flashner
* gnu/packges/graphviz.scm (python-pydot)[source]: Add patch. [arguments]: Override check phase. [native-inputs]: Add graphviz. * gnu/packages/patches/python-pydot-regression-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-11-23gnu: python-pydot: Update to 1.4.1.Efraim Flashner
* gnu/packages/graphviz.scm (python-pydot): Update to 1.4.1.
2020-11-23gnu: grub: Fix cross-compiling for other architectures.Efraim Flashner
Reported by cbaines and xelxebar on IRC. * gnu/packages/bootloaders.scm (grub)[arguments]: In custom 'set-freetype-variables phase only use the native-inputs version of freetype.
2020-11-23store: Fix ensure-path docstring.Mathieu Othacehe
Suggested by Ludovic Courtès. * guix/store.scm (ensure-path): Fix the docstring.
2020-11-23gnu: Add djvusmooth.Guillaume Le Vaillant
* gnu/packages/djvu.scm (djvusmooth): New variable.
2020-11-23gnu: Add python-djvulibre.Guillaume Le Vaillant
* gnu/packages/python-xyz.scm (python-djvulibre): New variable.
2020-11-23etc: snippets: Prefill Common Lisp package names.Pierre Neidhardt
* etc/snippets/text-mode/guix-commit-message-add-cl-package: New file.
2020-11-23etc: snippets: Fix package name extraction.Pierre Neidhardt
* etc/snippets/text-mode/guix-commit-message-add-package: Properly extract name when the diff contains a very short `define-public ...` above the actual new package. This can happen when the above package is a small inherited definition or cl/ecl package.
2020-11-23gnu: lsof: Cross-compile.Tobias Geerinckx-Rice
* gnu/packages/lsof.scm (lsof)[arguments]: Use CC-FOR-TARGET.
2020-11-23gnu: lsof: Make test failures fatal.Tobias Geerinckx-Rice
* gnu/packages/lsof.scm (lsof)[source]: Add patch to make test suite failures stop the build. * gnu/packages/patches/lsof-fatal-test-failures.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-11-23gnu: lsof: Respect #:tests?.Tobias Geerinckx-Rice
* gnu/packages/lsof.scm (lsof)[arguments]: The 'check phase takes and respects a TESTS? keyword.
2020-11-23gnu: lsof: Update to 4.94.0.Tobias Geerinckx-Rice
* gnu/packages/lsof.scm (lsof): Update to 4.94.0. [source]: Switch to new git upstream. [native-inputs]: Add groff. [arguments]: Remove custom 'unpack phase. Add a 'build-man-page phase. Remove the upstreamed glibc@2.28 test fix.
2020-11-23gnu: hdparm: Update to 9.60.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (hdparm): Update to 9.60.
2020-11-23gnu: ipset: Update to 7.9.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (ipset): Update to 7.9.
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