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2019-12-18gnu: darktable: Remove redundant inputs.Marius Bakke
* gnu/packages/photo.scm (darktable)[native-inputs]: Remove.
2019-12-18gnu: darktable: Fix build failure.Marius Bakke
* gnu/packages/photo.scm (darktable)[arguments]: Move CPATH override from #:make-flags to a phase, so the GETENV call returns useful data.
2019-12-18gnu: Remove uses of deprecated Qemu network configuration.Marius Bakke
* gnu/build/vm.scm (load-in-linux-vm): Move Qemu network configuration from ARCH-SPECIFIC-FLAGS to the Qemu command line. Use the "-nic" option of Qemu instead of "-device" and "-net". * gnu/system/vm.scm (common-qemu-options): Do not add a '-net' command. (virtual-machine-compiler): Use "-nic user,..." instead of "-net". * doc/guix.texi (Installing Guix in a VM, Invoking guix system, Running Guix in a VM): Do the same for examples.
2019-12-18gnu: linux-libre: Update to 5.3.18.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.18. (linux-libre-5.3-pristine-source): Update hash.
2019-12-18gnu: linux-libre: Update deblob scripts.Mark H Weaver
* gnu/packages/linux.scm (deblob-scripts-4.19): Update to 4.19.90. (deblob-scripts-4.14): Update to 4.14.159. (deblob-scripts-5.3, deblob-scripts-4.9, deblob-scripts-4.4): Update version numbers to 5.3.17, 4.9.206, and 4.4.206, respectively, although the scripts themselves have not changed.
2019-12-18gnu: Add r-biodist.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biodist): New variable.
2019-12-18gnu: Add r-biocworkflowtools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocworkflowtools): New variable.
2019-12-18gnu: Add r-biocset.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocset): New variable.
2019-12-18gnu: Add r-biocpkgtools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocpkgtools): New variable.
2019-12-18gnu: Add r-biocor.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocor): New variable.
2019-12-18gnu: Add r-bioconcotk.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
2019-12-18gnu: Add r-multiassayexperiment.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multiassayexperiment): New variable.
2019-12-18gnu: Add r-experimenthub.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-experimenthub): New variable.
2019-12-18gnu: Add r-biocgraph.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocgraph): New variable.
2019-12-18gnu: Add r-bioccasestudies.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioccasestudies): New variable.
2019-12-18gnu: Add r-ebarrays.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ebarrays): New variable.
2019-12-18gnu: Add r-reactomepa.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
2019-12-18gnu: Add r-graphite.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-graphite): New variable.
2019-12-18gnu: Add r-influencer.Ricardo Wurmus
* gnu/packages/cran.scm (r-influencer): New variable.
2019-12-18gnu: Add r-curatedtcgadata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
2019-12-18gnu: Add r-reactome-db.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
2019-12-18gnu: libmicrohttpd: Update to 0.9.69.Efraim Flashner
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.69.
2019-12-18gnu: cmst: Update to 2019.01.13.Efraim Flashner
* gnu/packages/connman.scm (cmst): Update to 2019.01.13.
2019-12-18gnu: python-ecdsa: Actually run the test suite.Efraim Flashner
* gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: Replace 'check phase. [native-inputs]: Add python-pytest.
2019-12-18gnu: python-ecdsa: Update to 0.14.1.Efraim Flashner
* gnu/packages/python-crypto.scm (python-ecdsa): Update to 0.14.1. [inputs]: Move openssl ... [native-inputs]: ... to here. [propagated-inputs]: Add python-six.
2019-12-17swh: Fix API call for getting origin.Björn Höfling
When using the archival linter, git origins already in the archive where not recognized due to an API change and where repeatedly asked for archival. This is fixed here. * guix/swh.scm (lookup-origin): Fix API URI for getting origin. (<origin>): Fix comment with API URI example.
2019-12-17gnu: linux-libre: Update to 5.3.17.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.17. (linux-libre-5.3-pristine-source): Update hash.
2019-12-17gnu: linux-libre@4.19: Update to 4.19.90.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.90. (linux-libre-4.19-pristine-source): Update hash.
2019-12-17gnu: linux-libre@4.14: Update to 4.14.159.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.159. (linux-libre-4.14-pristine-source): Update hash.
2019-12-17gnu: Add r-biobroom.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biobroom): New variable.
2019-12-17gnu: Add r-bioassayr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
2019-12-17gnu: Add r-chemminer.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chemminer): New variable.
2019-12-17gnu: Add r-bigpint.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bigpint): New variable.
2019-12-17gnu: Add r-bigmemoryextras.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
2019-12-17gnu: Add r-biggr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biggr): New variable.
2019-12-17gnu: Add r-hyperdraw.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
2019-12-17gnu: Add r-hypergraph.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
2019-12-17gnu: Add r-rsbml.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsbml): New variable.
2019-12-17gnu: Add r-bifet.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bifet): New variable.
2019-12-17gnu: Add r-bicare.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bicare): New variable.
2019-12-17gnu: Add r-bhc.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bhc): New variable.
2019-12-17gnu: Add r-bgx.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgx): New variable.
2019-12-17gnu: Add r-bgmix.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgmix): New variable.
2019-12-17gnu: Add r-rsvg.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsvg): New variable.
2019-12-17gnu: Add r-shinycssloaders.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinycssloaders): New variable.
2019-12-17gnu: Add r-lim.Ricardo Wurmus
* gnu/packages/cran.scm (r-lim): New variable.
2019-12-17gnu: Add r-diagram.Ricardo Wurmus
* gnu/packages/cran.scm (r-diagram): New variable.
2019-12-17gnu: Add r-poibin.Ricardo Wurmus
* gnu/packages/cran.scm (r-poibin): New variable.
2019-12-17gnu: Add libsbml.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (libsbml): New variable.
2019-12-17gnu: Add love-nuklear.Jethro Cao
* gnu/packages/game-development.scm (love-nuklear): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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