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2019-03-30gnu: wine-staging: Update to 4.5.•••* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.5. * gnu/packages/wine.scm (wine-staging): Update to 4.5. Rutger Helling
2019-03-30system: Define 'this-operating-system'.•••* gnu/system.scm (<operating-system>): Choose 'this-operating-system' as the 'this' identifier. [essential-services]: Adjust accordingly. Ludovic Courtès
2019-03-30packages: Define 'this-package' and 'this-origin'.•••* guix/packages.scm (<origin>): Choose 'this-origin' as the 'this' identifier. (<package>): Choose 'this-package'. * gnu/packages/gnucash.scm (gnucash)[arguments]: Use 'this-package' instead of 'this-record'. * gnu/packages/version-control.scm (git)[arguments]: Likewise. Ludovic Courtès
2019-03-30records: Support custom 'this' identifiers.•••This lets record users choose an identifier other than 'this-record'. * guix/records.scm (make-syntactic-constructor): Add #:this-identifier. [wrap-field-value]: Honor it. (define-record-type*): Add form with extra THIS-IDENTIFIER and honor it. * tests/records.scm ("define-record-type* & thunked & inherit & custom this"): New test. Ludovic Courtès
2019-03-30gnu: Add r-xcms.•••* gnu/packages/bioconductor.scm (r-xcms): New variable. Ricardo Wurmus
2019-03-30gnu: Add r-massspecwavelet.•••* gnu/packages/bioconductor.scm (r-massspecwavelet): New variable. Ricardo Wurmus
2019-03-30gnu: Add r-xbseq.•••* gnu/packages/bioconductor.scm (r-xbseq): New variable. Ricardo Wurmus
2019-03-30gnu: Add r-roar.•••* gnu/packages/bioconductor.scm (r-roar): New variable. Ricardo Wurmus
2019-03-30gnu: Add r-yarn.•••* gnu/packages/bioconductor.scm (r-yarn): New variable. Ricardo Wurmus
2019-03-30gnu: Add r-quantro.•••* gnu/packages/bioconductor.scm (r-quantro): New variable. Ricardo Wurmus
2019-03-30gnu: Add r-downloader.•••* gnu/packages/cran.scm (r-downloader): New variable. Ricardo Wurmus
2019-03-30gnu: Add r-yaqcaffy.•••* gnu/packages/bioconductor.scm (r-yaqcaffy): New variable. Ricardo Wurmus
2019-03-30gnu: Add r-simpleaffy.•••* gnu/packages/bioconductor.scm (r-simpleaffy): New variable. Ricardo Wurmus
2019-03-30gnu: Add r-gcrma.•••* gnu/packages/bioconductor.scm (r-gcrma): New variable. Ricardo Wurmus
2019-03-30gnu: Add r-yapsa.•••* gnu/packages/bioconductor.scm (r-yapsa): New variable. Ricardo Wurmus
2019-03-30gnu: Add r-somaticsignatures.•••* gnu/packages/bioconductor.scm (r-somaticsignatures): New variable. Ricardo Wurmus
2019-03-30gnu: Add r-gtrellis.•••* gnu/packages/bioconductor.scm (r-gtrellis): New variable. Ricardo Wurmus
2019-03-30gnu: Add r-pmcmr.•••* gnu/packages/cran.scm (r-pmcmr): New variable. Ricardo Wurmus
2019-03-30gnu: gtk+: Graft upstream fix for crashes in Emacs and IceCat.•••Fixes <https://bugs.gnu.org/34454>. * gnu/packages/patches/gtk3-fix-deprecation-macro-use.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gtk.scm (gtk+/fixed): New variable. (gtk+)[replacement]: New field. Mark H Weaver
2019-03-29gnu: Add font-iosevka-slab.•••The ’slab’ variants of Iosevka were moved to a separate archive with version 2.0.0. * gnu/packages/fonts.scm (font-iosevka-slab): New public variable. Tobias Geerinckx-Rice
2019-03-29gnu: font-iosevka: Update to 2.2.0.•••* gnu/packages/fonts.scm (font-iosevka): Update to 2.2.0. Tobias Geerinckx-Rice
2019-03-29gnu: Add r-yamss.•••* gnu/packages/bioconductor.scm (r-yamss): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-ebimage.•••* gnu/packages/bioconductor.scm (r-ebimage): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-aucell.•••* gnu/packages/bioconductor.scm (r-aucell): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-allelicimbalance.•••* gnu/packages/bioconductor.scm (r-allelicimbalance): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-annotationtools.•••* gnu/packages/bioconductor.scm (r-annotationtools): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-annotationfuncs.•••* gnu/packages/bioconductor.scm (r-annotationfuncs): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-abaenrichment.•••* gnu/packages/bioconductor.scm (r-abaenrichment): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-gofuncr.•••* gnu/packages/bioconductor.scm (r-gofuncr): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-abadata.•••* gnu/packages/bioconductor.scm (r-abadata): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-mapplots.•••* gnu/packages/cran.scm (r-mapplots): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-atacseqqc.•••* gnu/packages/bioconductor.scm (r-atacseqqc): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-genomicscores.•••* gnu/packages/bioconductor.scm (r-genomicscores): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-motifstack.•••* gnu/packages/bioconductor.scm (r-motifstack): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-motiv.•••* gnu/packages/bioconductor.scm (r-motiv): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-rgadem.•••* gnu/packages/bioconductor.scm (r-rgadem): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-preseqr.•••* gnu/packages/cran.scm (r-preseqr): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-bacon.•••* gnu/packages/bioconductor.scm (r-bacon): New variable. Ricardo Wurmus
2019-03-29gnu: php: Fix typo.•••Regression introduced in e8cfce439afed945e352ad28f73f0a5f7840f503. * gnu/packages/php.scm (php)[arguments]: Add missing 'else' branch of the 'if'. Change first argument to 'string-prefix?' to match GNU triplets as well. Ludovic Courtès
2019-03-29doc: Fix invalid uses of @ref.•••* doc/guix.texi (Invoking guix pull): Use @xref instead of @ref at the beginning of sentences. Ludovic Courtès
2019-03-29gnu: python-faiss: Fix building on non-Intel architectures.•••* gnu/packages/graph.scm (python-faiss)[arguments]: Adjust custom 'build-swig phase to change build flags for different archictures. Efraim Flashner
2019-03-29gnu: faiss: Fix building on non-Intel architectures.•••* gnu/packages/graph.scm (faiss)[source]: Add snippet to wrap Intel specific headers. [arguments]: Adjust custom 'prepare-build phase to adjust compile flags for different architectures. Efraim Flashner
2019-03-29gnu: stepmania: Fix all instances of accessing application data.•••This is a follow-up to commit 45aba232abe50b6642abfaa06030985c7febbe07. * gnu/packages/games.scm (stepmania)[arguments]: Rename phase ensure-gtk-module-can-be-found to ensure-application-files-can-be-found and fix remaining instances of application data access. Ricardo Wurmus
2019-03-29gnu: Stellarium: Update to 0.19.0.•••* gnu/packages/astronomy.scm (stellarium): Update to 0.19.0. [arguments]: Remove obsolete 'patch-tests' phase. Leo Famulari
2019-03-29gnu: stepmania: Fix loading of gtk module.•••Fixes <https://bugs.gnu.org/34854>. Suggested by Nicolas Goaziou. * gnu/packages/games.scm (stepmania)[arguments]: Add phase "ensure-gtk-module-can-be-found". Ricardo Wurmus
2019-03-29gnu: zynaddsubfx: Update to 3.0.4.•••* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.4. Ricardo Wurmus
2019-03-29gnu: Add r-abseqr.•••* gnu/packages/bioconductor.scm (r-abseqr): New variable. Ricardo Wurmus
2019-03-29gnu: Add r-flexdashboard.•••* gnu/packages/cran.scm (r-flexdashboard): New variable. Ricardo Wurmus
2019-03-29gnu: r-png: Move to (gnu packages cran).•••* gnu/packages/image.scm (r-png): Move from here... * gnu/packages/cran.scm (r-png): ...to here. Ricardo Wurmus
2019-03-29gnu: Add r-ggcorrplot.•••* gnu/packages/cran.scm (r-ggcorrplot): New variable. Ricardo Wurmus