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2021-03-05gnu: openscad: Disable failing tests with cgal@5.2 input....* gnu/packages/engineering.scm (openscad)[arguments]: Add more disable tests in 'check phase. Léo Le Bouter
2021-03-05gnu: cgal: Update to 5.2 [security fixes]....* gnu/packages/patches/cgal-security-pr-5371.patch: New patch. Downloaded from <https://patch-diff.githubusercontent.com/raw/CGAL/cgal/pull/5371.patch>, with hunks on files matching pattern "*Convex_decomposition_3*" removed because they don't exist in cgal's released sources. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/graphics.scm (cgal): Update to 5.2. [source]: Apply patch. Léo Le Bouter
2021-03-05gnu: guix: Update to 112692c....* gnu/packages/package-management.scm (guix): Update to 112692c. Christopher Baines
2021-03-05gnu: camlboot: Fix typo in properties....* gnu/packages/ocaml.scm (camlboot)[properties]: Add missing pair of parenthesis. Julien Lepiller
2021-03-05guix: Split (guix substitutes) from (guix scripts substitute)....This means there's a module for working with substitutes, rather than all the code sitting in the script. The need for this can be seen with the weather and challenge scripts, that now don't have to use code from the substitute script, but can instead use the substitute module. The separation here between the actual functionality of the substitute script and the underlying functionality used both there and elsewhere should make maintenance easier moving forward. This commit just moves code, none of the code should have been changed significantly. * guix/scripts/substitute.scm (%narinfo-cache-directory, %narinfo-ttl, %narinfo-negative-ttl, %narinfo-transient-error-ttl, %unreachable-hosts): Move variables to guix/substitutes.scm. (narinfo-cache-file, cached-narinfo, cache-narinfo!, narinfo-request, read-to-eof, call-with-connection-error-handling, fetch-narinfos, lookup-narinfos, lookup-narinfos/diverse): Move procedures to guix/substitutes.scm. * guix/substitutes.scm: New file. * Makefile.am: Add it. * guix/narinfo.scm: Remove redundant module. * guix/scripts/challenge.scm: Change (guix scripts substitute) to (guix substitutes). * guix/scripts/weather.scm: Change (guix scripts substitute) to (guix substitutes). Christopher Baines
2021-03-05gnu: network-manager-applet: Update to 1.20.0....* gnu/packages/gnome.scm (network-manager-applet): Update to 1.20.0. Brice Waegeneire
2021-03-05gnu: network-manager-applet: Activate support for libappindicator....* gnu/packages/gnome.scm (network-manager-applet): Activate support for libappindicator. [arguments]: Add #:configure-flags. [inputs]: Add "libappindicator". Signed-off-by: Brice Waegeneire <brice@waegenei.re> Sébastien Lerique
2021-03-05gnu: Audacity: Fix a crash on foreign distros....Without the wrap phase, Audacity crashes like this when trying to use the "Open file" dialog: (audacity:28276): GLib-GIO-ERROR **: 14:14:55.211: Settings schema 'org.gtk.Settings.FileChooser' is not installed * gnu/packages/audio.scm (audacity)[arguments]: Add (guix build glib-or-gtk-build-system) to #:imported-modules. Adjust #:modules accordingly. Add phases 'glib-or-gtk-wrap'. Leo Famulari
2021-03-05gnu: pencil2d: Update to 0.6.6....* gnu/packages/animation.scm (pencil2d): Update to 0.6.6. Tobias Geerinckx-Rice
2021-03-05gnu: libburn: Update to 1.5.4....* gnu/packages/cdrom.scm (libburn): Update to 1.5.4. Tobias Geerinckx-Rice
2021-03-05pull: Expand help text for --{url,commit,branch}....* guix/scripts/pull.scm (show-help): Document that ‘--url’, ‘--commit’, and ‘--branch’ affect only the ‘guix’ channel (for now?). Tobias Geerinckx-Rice
2021-03-05gnu: denemo: Update to 2.5.0....* gnu/packages/music.scm (denemo): Update to 2.5.0. Nicolas Goaziou
2021-03-05gnu: youtube-dl: Update to 2021-03-03....gnu/packages/video.scm (youtube-dl): Update to 2021-03-03. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Daniel Brooks
2021-03-05gnu: Add emacs-envrc....* gnu/packages/emacs-xyz.scm (emacs-envrc): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Xinglu Chen
2021-03-05gnu: Add lr....* gnu/packages/admin.scm (lr): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Stefan Reichör
2021-03-05gnu: Add emacs-springboard....* gnu/packages/emacs-xyz.scm (emacs-springboard): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Stefan Reichör
2021-03-05gnu: Add emacs-multifiles....* gnu/packages/emacs-xyz.scm (emacs-multifiles): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Stefan Reichör
2021-03-05gnu: emacs-eglot: Add missing dependency....* gnu/packages/emacs-xyz.scm (emacs-eglot):[arguments] Add dependency. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> John Soo
2021-03-05gnu: Add emacs-eldoc....* gnu/packages/emacs-xyz.scm (emacs-eldoc): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> John Soo
2021-03-05gnu: php: Update to 7.4.16 [security fixes]....* gnu/packages/php.scm (php): Update to 7.4.16. [arguments]: Patch failing new test. Tobias Geerinckx-Rice
2021-03-05gnu: Add r-circrnaprofiler....* gnu/packages/bioconductor.scm (r-circrnaprofiler): New variable. Mădălin Ionel Patrașcu
2021-03-05gnu: Add r-universalmotif....* gnu/packages/bioconductor.scm (r-universalmotif): New variable. Mădălin Ionel Patrașcu
2021-03-05gnu: Add r-rcppthread....* gnu/packages/cran.scm (r-rcppthread): New variable. Mădălin Ionel Patrașcu
2021-03-05gnu: camlboot: Raise max-silent-time timeout value to 4 hours....* gnu/packages/ocaml.scm (camlboot)[properties]: Add a 'max-silent-time' property, with a value of 4 hours. Julien Lepiller
2021-03-05gnu: Add r-cellchat....* gnu/packages/bioinformatics.scm (r-cellchat): New variable. Ricardo Wurmus
2021-03-05gnu: Add r-gg-gap....* gnu/packages/cran.scm (r-gg-gap): New variable. Ricardo Wurmus
2021-03-05gnu: virtualpg: Update to 2.0.1....* gnu/packages/geo.scm (virtualpg): Update to 2.0.1. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Felix Gruber
2021-03-05gnu: racket: Update to 8.0....* gnu/packages/scheme.scm (racket): Update to 8.0. [arguments]: Add #:configure-flags. Add 'patch-chez-configure' phase. [inputs]: Add "zlib", "zlib:static", "lz4", and "lz4:static". [synopsis, description]: Tweak. (racket-minimal): Update to 8.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2021-03-05tests: Refer to '%derivation-cache' in the right module....* guix/tests.scm (call-with-external-store): Fix module name for '%derivation-cache'. Ludovic Courtès
2021-03-05download: 'url-fetch/tarbomb' and 'url-fetch/zipbomb' refer to native tools....* guix/download.scm (url-fetch/tarbomb, url-fetch/zipbomb): Use 'ungexp-native' instead of 'ungexp' when referring to the decompression tools. Ludovic Courtès
2021-03-05gexp: Honor #:target in 'compiled-modules'....* guix/gexp.scm (compiled-modules): Pass #:target to 'gexp->derivation'. Ludovic Courtès
2021-03-05doc: Refer to the right node for '--keep-failed'....* doc/guix.texi (Invoking guix-daemon, Debugging Build Failures): Refer to "Common Build Options" for '--keep-failed'. Ludovic Courtès
2021-03-05profiles: 'package->manifest-entry' preserves transformations by default....Previously, transformations applied from a manifest (rather than via "guix install") would be lost. This change fixes that and simplifies things. Reported by zimoun at <https://lists.gnu.org/archive/html/guix-devel/2021-02/msg00153.html>. * guix/profiles.scm (default-properties): New procedure. (package->manifest-entry): Use it for #:properties. * guix/scripts/pack.scm (guix-pack)[with-transformations]: Remove. Remove caller. * guix/scripts/package.scm (transaction-upgrade-entry): Remove calls to 'manifest-entry-with-transformations'. * tests/guix-package.sh: Add test. * tests/transformations.scm ("options->transformation + package->manifest-entry"): New test. Ludovic Courtès
2021-03-05gnu: hamlib: Update to 4.1....* gnu/packages/radio.scm (hamlib): Update to 4.1. Guillaume Le Vaillant
2021-03-05services: guix-build-coordinator: Add dynamic auth with file record....* gnu/services/guix.scm (guix-build-coordinator-agent-dynamic-auth-with-file, guix-build-coordinator-agent-dynamic-auth-with-filen?, guix-build-coordinator-agent-dynamic-auth-with-file-agent-name, guix-build-coordinator-agent-dynamic-auth-with-file-token-file): New procedures. (guix-build-coordinator-agent-shepherd-services): Handle new dynamic auth with file record. * doc/guix.texi (Guix Build Coordinator): Document the new dynamic auth with file record. Christopher Baines
2021-03-04gnu: mupdf: Fix CVE-2021-3407....* gnu/packages/pdf.scm (mupdf)[source]: Add patch. * gnu/packages/patches/mupdf-CVE-2021-3407.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Kei Kebreau
2021-03-04gnu: linux-libre 4.19: Update to 4.19.178....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.178. (linux-libre-4.19-pristine-source): Update hash. Leo Famulari
2021-03-04gnu: linux-libre 5.4: Update to 5.4.102....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.102. (linux-libre-5.4-pristine-source): Update hash. Leo Famulari
2021-03-04gnu: linux-libre 5.10: Update to 5.10.20....* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.20. (linux-libre-5.10-pristine-source): Update hash. Leo Famulari
2021-03-04gnu: linux-libre: Update to 5.11.3....* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.3. (linux-libre-5.11-pristine-source, deblob-scripts-5.11): Update hashes. Leo Famulari
2021-03-04gnu: ruby-minitest: Update to 5.12.2....* gnu/packages/ruby.scm (ruby-minitest): Update to 5.12.2. Efraim Flashner
2021-03-04gnu: ruby-builder: Update to 3.2.4....* gnu/packages/ruby.scm (ruby-builder): Update to 3.2.4. Efraim Flashner
2021-03-04gnu: ripgrep: Fix build....* gnu/packages/rust-apps.scm (ripgrep)[arguments]: Disable tests for now. Some are failing due to recent rust-bstr upgrade. Nicolas Goaziou
2021-03-04gnu: mariadb-connector-c: Fix source tarball file name....* gnu/packages/databases.scm (mariadb-connector-c)[source]: Add a FILE-NAME. Tobias Geerinckx-Rice
2021-03-04gnu: mariadb-connector-c: Update to 3.1.12....* gnu/packages/databases.scm (mariadb-connector-c): Update to 3.1.12. Tobias Geerinckx-Rice
2021-03-04gnu: pigz: Update to 2.6....* gnu/packages/compression.scm (pigz): Update to 2.6. Tobias Geerinckx-Rice
2021-03-04gnu: clzip: Update to 1.12....* gnu/packages/compression.scm (clzip): Update to 1.12. Tobias Geerinckx-Rice
2021-03-04gnu: simde: Update to 0.7.2....* gnu/packages/assembly.scm (simde): Update to 0.7.2. Tobias Geerinckx-Rice
2021-03-04gnu: fasm: Update to 1.73.27....* gnu/packages/assembly.scm (fasm): Update to 1.73.27. Tobias Geerinckx-Rice
2021-03-04gnu: libolm: Update to 3.2.2....* gnu/packages/crypto.scm (libolm): Update to 3.2.2. Tobias Geerinckx-Rice