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2019-01-28gnu: Add fish-foreign-env.Meiyo Peng
* gnu/packages/shells.scm (fish-foreign-env): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-28gnu: fish: Update to 3.0.0.Meiyo Peng
* gnu/packages/shells.scm (fish): Update to 3.0.0. [source]: Remove dead URL. [inputs]: Remove bc. Replace python-wrapper with python. [arguments]: Remove configure-flags. Enable fish to source /etc/fish/config.fish. Enable completions, functions and configurations in user's and system's guix profiles. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-28pull: Don't trigger 'hash guix' hint needlessly.Ludovic Courtès
Previously if ~/.config/guix/current/bin was in $PATH, we'd still suggest to run 'hash guix' because we'd compare (which "guix") against /var/guix/profiles/per-user/…. * guix/scripts/pull.scm (build-and-install): Check whether (which "guix") matches PROFILE or its user-friendly variant.
2019-01-28channels: Turn off deprecation warnings when loading 'build-self.scm'.Ludovic Courtès
* guix/channels.scm (build-from-source): Parameterize DEPRECATION-WARNING-PORT when loading SCRIPT.
2019-01-28upstream: Temporarily skip failing test.Ludovic Courtès
* tests/upstream.scm ("coalesce-sources same version"): Skip.
2019-01-28gnu: youtube-dl: Update to 2019.01.27.Ludovic Courtès
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.27.
2019-01-28gnu: fastcap: Fix build and use INVOKE.Ricardo Wurmus
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive-tiny with a texlive-union including texlive-fonts-amsfonts. [arguments]: Use INVOKE in build phases.
2019-01-28gnu: scons: Update to 3.0.3.Ricardo Wurmus
Fixes <https://bugs.gnu.org/34236>. * gnu/packages/python-xyz.scm (scons): Update to 3.0.3. [arguments]: Add "bootstrap" phase.
2019-01-28gnu: r-genomicfeatures: Update to 1.34.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.2.
2019-01-28gnu: r-variantannotation: Update to 1.28.10.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.10.
2019-01-28gnu: r-rmpfr: Update to 0.7-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rmpfr): Update to 0.7-2.
2019-01-28gnu: r-waveslim: Update to 1.7.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-waveslim): Update to 1.7.5.1.
2019-01-28gnu: r-activity: Update to 1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-activity): Update to 1.2. [propagated-inputs]: Remove r-overlap.
2019-01-28gnu: r-emmeans: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.2.
2019-01-28gnu: r-th-data: Update to 1.0-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-th-data): Update to 1.0-10.
2019-01-28gnu: r-acceptancesampling: Update to 1.0-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-acceptancesampling): Update to 1.0-6.
2019-01-28gnu: r-vioplot: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.0. [propagated-inputs]: Add r-zoo.
2019-01-28gnu: r-jomo: Update to 2.6-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-jomo): Update to 2.6-6.
2019-01-28gnu: r-fitdistrplus: Update to 1.0-14.Ricardo Wurmus
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-14.
2019-01-28gnu: r-colorspace: Update to 1.4-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-colorspace): Update to 1.4-0.
2019-01-28gnu: r-ggmap: Update to 2.6.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggmap): Update to 2.6.2.
2019-01-28gnu: r-ranger: Update to 0.11.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ranger): Update to 0.11.1.
2019-01-28gnu: r-prabclus: Update to 2.2-7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-prabclus): Update to 2.2-7.
2019-01-28gnu: r-gplots: Update to 3.0.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gplots): Update to 3.0.1.1.
2019-01-28gnu: r-hmisc: Update to 4.2-0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hmisc): Update to 4.2-0.
2019-01-28gnu: r-purrr: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.0. [propagated-inputs]: Remove r-tibble.
2019-01-28gnu: r-e1071: Update to 1.7-0.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-0.1.
2019-01-28gnu: r-rcpparmadillo: Update to 0.9.200.7.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.7.0.
2019-01-28gnu: r-openssl: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl): Update to 1.2.1. [native-inputs]: Add pkg-config. [propagated-inputs]: Add r-askpass.
2019-01-28gnu: r-checkmate: Update to 1.9.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.1.
2019-01-28gnu: r-data-table: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-data-table): Update to 1.12.0.
2019-01-28gnu: r-qtl: Update to 1.44-9.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.44-9.
2019-01-28gnu: r-optparse: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-optparse): Update to 1.6.1.
2019-01-28gnu: Add r-askpass.Ricardo Wurmus
* gnu/packages/cran.scm (r-askpass): New variable.
2019-01-28gnu: Add r-sys.Ricardo Wurmus
* gnu/packages/cran.scm (r-sys): New variable.
2019-01-28nls: Update 'de' translation of the manual.Ludovic Courtès
2019-01-28packages: 'package-input-rewriting' can take a promise.Ludovic Courtès
* guix/packages.scm (package-input-rewriting): Allow REPLACEMENTS to be a promise. * gnu/packages/guile.scm (package-for-guile-2.0): Delay the first argument to 'package-input-rewriting'.
2019-01-28doc: Clarify 'sudo' vs. 'guix pull' and 'guix system reconfigure'.Ludovic Courtès
* doc/guix.texi (Proceeding with the Installation): Clarify use of "sudo" with "guix pull" and "guix system reconfigure".
2019-01-28gnu: Remove now unused 'package-for-guile-2.2' procedure.Ludovic Courtès
* gnu/packages/guile.scm (package-for-guile-2.2): Remove.
2019-01-28gnu: mumi: Update to 0.0.0-3.ea5a738.Ricardo Wurmus
* gnu/packages/mail.scm (mumi): Update to 0.0.0-3.ea5a738.
2019-01-28gnu: artanis: Update to 0.3.1.swedebugia
* gnu/packages/guile-xyz.scm (artanis): Update to 0.3.1. [snippet]: Remove bundled guile-redis. [inputs]: Add guile-redis. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-01-28gnu: Move most packages from guile.scm to new module.Ricardo Wurmus
* gnu/packages/guile.scm (artanis, guildhall, guile-aspell, guile-bash, guile-8sync, guile-daemon, guile-dsv, guile-fibers, guile-syntax-highlight, guile-sjson, guile-colorized, guile-pfds, guile-aa-tree, guile-simple-zmq, jupyter-guile-kernel, guile-sparql, guile-debbugs, guile-email, guile-debbugs-next, guile-newt, guile-mastodon, guile-parted, guile-xosd, guile-dbi, guile-dbd-sqlite3, guile-config, guile-hall, guile-ics, guile-wisp, guile-sly, g-wrap, guile-miniadapton, guile-reader, guile2.2-reader, guile-ncurses, guile-ncurses/gpm, guile-lib, guile2.0-lib, guile2.2-lib, guile-minikanren, guile2.0-minikanren, guile2.2-minikanren, guile-irregex, guile2.0-irregex, guile2.2-irregex, haunt, guile2.0-haunt, guile2.2-haunt, guile-redis, guile2.0-redis, guile2.2-redis, guile-commonmark, guile2.0-commonmark, guile2.2-commonmark, mcron, mcron2): Move these variables from here... * gnu/packages/guile-xyz.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/installer.scm, gnu/packages/bioinformatics.scm, gnu/packages/ci.scm, gnu/packages/gtk.scm, gnu/packages/guile.scm, gnu/packages/mail.scm, gnu/packages/package-management.scm, gnu/packages/skribilo.scm, gnu/packages/web.scm, gnu/services/mcron.scm: Update module references.
2019-01-28gnu: python-discover: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/check.scm (python-discover)[source]: Use PYPI-URI.
2019-01-28gnu: python-testlib: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/check.scm (python-testlib)[source]: Use PYPI-URI.
2019-01-28gnu: python-testrepository-bootstrap: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/check.scm (python-testrepository-bootstrap)[source]: Use PYPI-URI.
2019-01-28gnu: python2-jsonrpclib: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python2-jsonrpclib)[source]: Use PYPI-URI.
2019-01-28gnu: python-pykafka: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pykafka)[source]: Use PYPI-URI.
2019-01-28gnu: python-configobj: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-configobj)[source]: Use PYPI-URI.
2019-01-28gnu: python-pretend: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pretend)[source]: Use PYPI-URI.
2019-01-28gnu: python-prettytable: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-prettytable)[source]: Use PYPI-URI.
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