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2020-04-28gnu: ungoogled-chromium: Update to 81.0.4044.129-0.c2a89fb [security fixes].Marius Bakke
This fixes CVE-2020-6462 and CVE-2020-6461. * gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.129. (%ungoogled-revision): Set to c2a89fb6b5b559c826796c811741fa8ed3e11de8. (%chromium-origin, %ungoogled-origin): Update hashes.
2020-04-28gnu: Add variant-tools.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (variant-tools): New variable.
2020-04-28gnu: Add hdf5-blosc.Ricardo Wurmus
* gnu/packages/maths.scm (hdf5-blosc): New variable.
2020-04-28gnu: Add c-blosc.Ricardo Wurmus
* gnu/packages/compression.scm (c-blosc): New variable.
2020-04-28gnu: Add kbdd-0.7.1Boris A. Dekshteyn
* gnu/packages/xdisorg.scm (kbdd): New variable. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-04-28gnu: ecl: Update to 20.4.24.Pierre Neidhardt
* gnu/packages/lisp.scm (ecl): Update to 20.4.24. [native-inputs]: Add texinfo to make the manual. [license]: Set to lgpl2.1+.
2020-04-28gnu: sbcl-cl-cffi-gtk: Link source to parent to reduce closure size.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28gnu: sbcl-cl-cffi-gtk-gdk: Link source to parent to reduce closure size.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gdk)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28gnu: sbcl-cl-cffi-gtk-gdk-pixbuf: Link source to parent to reduce closure size.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gdk-pixbuf)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28gnu: sbcl-cl-cffi-gtk-pango: Link source to parent to reduce closure size.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-pango)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28gnu: sbcl-cl-cffi-gtk-cairo: Link source to parent to reduce closure size.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-cairo)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28gnu: sbcl-cl-cffi-gtk-gio: Link source to parent to reduce closure size.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gio)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28gnu: sbcl-cl-cffi-gtk-gobject: Link source to parent to reduce closure size.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-cl-cffi-gtk-gobject)[arguments]: Replace source folder with link to the same folder in the sbcl-cl-cffi-gtk-glib dependency.
2020-04-28gnu: Add emacs-trashed.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-trashed): New variable.
2020-04-28gnu: gnuradio-osmosdr: Add hackrf support.Guillaume Le Vaillant
* gnu/packages/radio.scm (gnuradio-osmosdr)[inputs]: Add hackrf.
2020-04-28gnu: Add hackrf.Christopher Howard
* gnu/packages/radio.scm (hackrf): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
2020-04-28gnu: hpcguix-web: Use guile3.0-guix.Roel Janssen
* gnu/packages/web.scm (hpcguix-web): Update to latest revision and use guile3.0 inputs.
2020-04-28gnu: python-scikit-learn: Make python-joblib a propagated input.Konrad Hinsen
* gnu/packages/machine-learning.scm (python-scikit-learn) [native-inputs]: Move 'python-joblib' to ... [propagated-inputs]: ... here. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-28gnu: gst-kaldi-nnet2-online: Update to 0-2.cb227ef.Ricardo Wurmus
* gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to 0-2.cb227ef.
2020-04-28gnu: kaldi: Update to 0-2.d4791c0.Ricardo Wurmus
* gnu/packages/machine-learning.scm (kaldi): Update to 0-2.d4791c0.
2020-04-28gnu: r-hdf5array: Update to 1.14.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.4.
2020-04-28gnu: r-seurat: Update to 3.1.5.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.5. [propagated-inputs]: Remove r-metap.
2020-04-28gnu: r-topicmodels: Update to 0.2-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-11.
2020-04-28gnu: r-stopwords: Update to 2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-stopwords): Update to 2.0. [propagated-inputs]: Add r-desc and r-usethis.
2020-04-28gnu: r-fda: Update to 5.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-fda): Update to 5.1.4.
2020-04-28gnu: r-abtest: Update to 0.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-abtest): Update to 0.2.1. [propagated-inputs]: Add r-qgam; remove r-vgam.
2020-04-28gnu: Add r-qgam.Ricardo Wurmus
* gnu/packages/cran.scm (r-qgam): New variable.
2020-04-28gnu: r-systemfonts: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.0. [inputs]: Remove freetype. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-dalex: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-dalex): Update to 1.2.0. [propagated-inputs]: Add r-ibreakdown and r-ingredients.
2020-04-28gnu: r-rex: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rex): Update to 1.2.0. [propagated-inputs]: Remove r-magrittr. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-optparse: Update to 1.6.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-optparse): Update to 1.6.6. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-sf: Update to 0.9-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-sf): Update to 0.9-2.
2020-04-28gnu: r-future-apply: Update to 1.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-future-apply): Update to 1.5.0.
2020-04-28gnu: r-etm: Update to 1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-etm): Update to 1.1.
2020-04-28gnu: r-future: Update to 1.17.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-future): Update to 1.17.0.
2020-04-28gnu: r-protviz: Update to 0.6.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-protviz): Update to 0.6.4.
2020-04-28gnu: r-rgl: Update to 0.100.54.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgl): Update to 0.100.54.
2020-04-28gnu: r-ggeffects: Update to 0.14.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggeffects): Update to 0.14.3.
2020-04-28gnu: r-bayestestr: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayestestr): Update to 0.6.0.
2020-04-28gnu: r-emmeans: Update to 1.4.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.6. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-raster: Update to 3.1-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-raster): Update to 3.1-5.
2020-04-28gnu: r-insight: Update to 0.8.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): Update to 0.8.3.
2020-04-28gnu: r-tinytex: Update to 0.22.Ricardo Wurmus
* gnu/packages/cran.scm (r-tinytex): Update to 0.22.
2020-04-28gnu: r-tsp: Update to 1.1-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-tsp): Update to 1.1-10.
2020-04-28gnu: r-broom: Update to 0.5.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-broom): Update to 0.5.6. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-distillery: Update to 1.0-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-distillery): Update to 1.0-7.
2020-04-28gnu: r-ff: Update to 2.2-14.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ff): Update to 2.2-14.2.
2020-04-28gnu: r-powerlaw: Update to 0.70.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.6. [propagated-inputs]: Remove r-vgam; add r-pracma. [native-inputs]: Add r-knitr.
2020-04-28gnu: r-shinyfiles: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.8.0.
2020-04-28gnu: Add r-ibreakdown.Ricardo Wurmus
* gnu/packages/cran.scm (r-ibreakdown): New variable.
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