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2024-03-15gnu: r-clusterprofiler: Update to 4.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.10.1. Change-Id: I05b41c27d1e1ac8b2887845df5a4a75d45513929
2024-03-15gnu: r-zlibbioc: Update to 1.48.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.48.2. [native-inputs]: Add r-knitr. Change-Id: Iee1c599473d30532660eb3770cf471ff979530dd
2024-03-15gnu: r-stringdb: Update to 2.14.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.14.3. [propagated-inputs]: Remove r-rcurl; add r-httr. Change-Id: Id46873bee69cdd1047002db3505ff5420097e9e9
2024-03-15gnu: r-gsva: Update to 1.50.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.1. Change-Id: Ib298992cb9ea4615fe3888e799c332e778a7b5be
2024-03-15gnu: r-genomicfeatures: Update to 1.54.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.54.4. [propagated-inputs]: Remove r-rcurl; add r-httr and r-rjson. Change-Id: Iaed5177d04bc1c292dfad607f82401f45cfd02bc
2024-03-15gnu: r-genomeinfodb: Update to 1.38.7.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.7. [propagated-inputs]: Remove r-rcurl. Change-Id: Ifc265a49ed946f3548ff279b930a8346c42025a8
2024-03-15gnu: r-deseq2: Update to 1.42.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.42.1. Change-Id: Ida0b7ad662c44b2b12af487bb6aa8364874ce3da
2024-03-15gnu: r-biostrings: Update to 2.70.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.3. Change-Id: I4a921a148d9f54be13967ed0e3092353a683f20f
2024-03-15gnu: r-coregx: Update to 2.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.6.1. Change-Id: Icb0eb5a7697811f4272cda3d42d3c428bb59bd23
2024-03-15gnu: r-asics: Update to 2.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-asics): Update to 2.18.1. Change-Id: I760771fd8fe57984ae1d0c96b72cb63562a1b43e
2024-03-15doc: build: Update paths to style sheets.Luis Felipe
The Guix website style sheets are now organized in themes. This change makes the documentation builder use the resources provided by a theme called "initial" (See https://issues.guix.gnu.org/69783). * doc/build.scm (syntax-highlighted-html): Update path to CSS. (html-manual-indexes): Likewise. (stylized-html): Likewise, and update path to language picker image. Change-Id: Ib2d51fcfdec42ad827add1ead1cfee4c9c4e65b7 Signed-off-by: Florian Pelz <pelzflorian@pelzflorian.de>
2024-03-15gnu: alacritty: Fix loading of libxkbcommon-x11.so.Clément Lassieur
* gnu/packages/terminals.scm (alacritty)[arguments]: Handle libxkbcommon-x11.so in the ‘add-absolute-library-references’ phase. This fixes this error: thread 'main' panicked at /tmp/guix-build-alacritty-0.13.1.drv-0/source/guix-vendor/rust-xkbcommon-dl-0.4.1.tar.gz/src/x11.rs:59:28: Library libxkbcommon-x11.so could not be loaded. note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace Change-Id: Ifbf19b4962bc3d9eeba6acdf32ca66b0c662f493 Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2024-03-15gnu: python-pycurl: Disable one failing test.Sharlatan Hellseher
* gnu/packages/python-web.com (python-pycurl) [arguments] <#:test-flags>: Disable one more failing test which occurs on CI with CPU thread count more than 16. Change-Id: Ie772a7f096357b541cc8baa2349a524f05500e52
2024-03-15Revert "gnu: linux-libre-documentation: Fix compilation."Leo Famulari
This bug was fixed upstream in 6.7.6. This reverts commit b6f82b9ef1a3d51a39995598eab9f793656e9123. Change-Id: Ia756a62b29ad1f342b0e7430a0cb88cc140974eb
2024-03-15gnu: linux-libre 4.19: Update to 4.19.309.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.309. (linux-libre-4.19-pristine-source): Update hash. Change-Id: If579a8179ded35cb4269e733bd96ee6f7c5d5360
2024-03-15gnu: linux-libre 5.4: Update to 5.4.271.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.271. (linux-libre-5.4-pristine-source): Update hash. Change-Id: Iaf7277f1f4ec3f106b8f0b82aef5a8be953972bd
2024-03-15gnu: linux-libre 5.10: Update to 5.10.212.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.212. (linux-libre-5.10-pristine-source): Update hash. Change-Id: I620729ec22cd67bbe22dc808ba6b4d74d2c0479d
2024-03-15gnu: linux-libre 5.15: Update to 5.15.151.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.151. (linux-libre-5.15-pristine-source): Update hash. Change-Id: I83ddffad4f1ce05723faa5d243e8345b21e39edb
2024-03-15gnu: linux-libre 6.1: Update to 6.1.81.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.81. (linux-libre-6.1-pristine-source, deblob-scripts-6.1): Update hashes. Change-Id: Iaec9f01a190d67bcab490c318456241ea8eabf22
2024-03-15gnu: linux-libre 6.6: Update to 6.6.21.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.21. (linux-libre-6.6-pristine-source): Update hash. Change-Id: Ic2f197add55f89196010c32957e10d3683cb8c01
2024-03-15gnu: linux-libre: Update to 6.7.9.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.7-version): Update to 6.7.9. (linux-libre-6.7-pristine-source): Update hash. Change-Id: I9d3e3907623b17f1a47b78ea00e9b7a5cf428ff6
2024-03-14gnu: python-pycurl: Enable tests.Sharlatan Hellseher
* gnu/packages/python-web.scm (python-pycurl): Enable most of the tests. [build-system]: Swap to pyproject-build-system. [arguments] <#:tests?>: Enable them. <#:test-arguments>: Disable some failing and hanging tests. [native-inputs]: Add python-flaky, python-pytest, and python-pytest-xdist. Change-Id: Ie222aa1111720f2e39b950b79d9e707401be7e8f
2024-03-14gnu: packages: python-web: Sort use-modules alphabetically.Sharlatan Hellseher
* gnu/packages/python-web.scm: Sort #:use-module alphabetically to ease maintenance. Change-Id: Id01b66ff7eaf610895c1275c2abfd9de2e537d8e
2024-03-14gnu: Add python-zodb.Troy Figiel
* gnu/packages/python-web.scm (python-zodb): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-03-14gnu: Add python-zodbpickle.Troy Figiel
* gnu/packages/python-web.scm (python-zodbpickle): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-03-14gnu: Add python-zconfig.Troy Figiel
* gnu/packages/python-web.scm (python-zconfig): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-03-14gnu: Add morpheus.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (morpheus): New variable. Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de> Change-Id: I4bf14414f497ff17690b1d26420d442d236fd6b5
2024-03-14teams: Add Tanguy Le Carrour.Tanguy Le Carrour
* etc/teams.scm.in ("Tanguy Le Carrour"): New member. Change-Id: Ic1b1588a5a8bc67ee8e135c3069966f139374529 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: raspi-gpio: Make public.Jean-Pierre De Jesus DIAZ
As it's unclear why it's not. * gnu/packages/raspberry-pi.scm (raspi-gpio): Make variable public. Change-Id: Iaf2789120a726d702d97c3a30a32e3b2cf5da3f1 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: combinatorial-blas: Update source hash.Christopher Baines
Diffoscope shows there are changes, but they don't look significant. * gnu/packages/maths.scm (combinatorial-blas): Update source hash. Change-Id: I32db6df0ef7c652572b1e874fe22175a4b66af6e
2024-03-14doc: Fix section on LUKS support.Fabio Natali
Only LUKS1 is supported in Guix at the time of this commit. Contrarily to what reported in previous versions of this section, LUKS2 is not supported. * doc/guix.texi (Keyboard Layout, Networking, and Partitioning)[Disk Partitioning]: Fix section on LUKS support. Signed-off-by: Christopher Baines <mail@cbaines.net> Change-Id: Ia670963178810174d3ea4585c537defbaaeb0f25
2024-03-14gnu: openjdk21: Update to 21.0.2.Greg Hogan
* gnu/packages/java.scm (openjdk21): Update to 21.0.2. Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: openjdk20: Update to 20.0.2.Greg Hogan
* gnu/packages/java.scm (openjdk20): Update to 20.0.2. Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: openjdk18: Update to 18.0.2.1.Greg Hogan
* gnu/packages/java.scm (openjdk18): Update to 18.0.2.1. Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: openjdk17: Update to 17.0.10.Greg Hogan
* gnu/packages/java.scm (openjdk17): Update to 17.0.10. Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: openjdk15: Update to 15.0.10.Greg Hogan
* gnu/packages/java.scm (openjdk15): Update to 15.0.10. Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: openjdk13: Update to 13.0.14.Greg Hogan
* gnu/packages/java.scm (openjdk13): Update to 13.0.14. Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: openjdk12: Update source hash.Greg Hogan
* gnu/packages/java.scm (openjdk12): Update source hash. Signed-off-by: Christopher Baines <mail@cbaines.net> Change-Id: I03cbaf3fc21c045c67cd89bb37e232716b03bb30
2024-03-14gnu: openjdk11: Update to 11.0.22.Greg Hogan
* gnu/packages/java.scm (openjdk11): Update to 11.0.22. Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: tinmop: Update to 0.9.9.141421356.cage
* gnu/packages/web-browsers.scm (tinmop): Update to 0.9.9.141421356. Change-Id: Ibf43c33b2581a78d5a4050493049db73f77c896b Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-03-14gnu: cl-croatoan: Update to 0.2-1.282145f.cage
* gnu/packages/lisp-xyz.scm (sbcl-croatoan): Update to 0.2-1.282145f. Change-Id: I8a7e93e9f0dabfa42e35845e610dd5bd2b63cec9 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-03-14gnu: emacs-arei: Update to 0.9.3.Andrew Tropin
* gnu/packages/emacs-xyz.scm (emacs-arei): Update to 0.9.3. Change-Id: I4cbdc4d5b65038c34912575a4f106993972c2a6f
2024-03-14gnu: guile-ares-rs: Update to 0.9.3.Andrew Tropin
* gnu/packages/guile-xyz.scm (guile-ares-rs): Update to 0.9.3. Change-Id: Iabe57fcb4f1947eb0908109333e4432b8e554cfe
2024-03-13gnu: emacs-hyperbole: Update to 9.0.1.Nicolas Goaziou
Fixes <https://issues.guix.gnu.org/69776>. * gnu/packages/emacs-xyz.scm (emacs-hyperbole): Update to 9.0.1. [arguments]<#:include>: Add HY-NEWS. Change-Id: I9d8c4be3d1a1af30f69ac87cf5d0f1db29d5d935
2024-03-13gnu: rust: Make all intermediate packages public.Efraim Flashner
* gnu/packages/rust.scm (rust-1.74, rust-1.75): Make package public. Change-Id: Id45d6e8c6e6c42811d4cbc3ab50c61045a7c9090
2024-03-13gnu: llvm-17: Fix building on riscv64-linux.Efraim Flashner
* gnu/packages/llvm.scm (%llvm-patches): Add a patch for 17.0.6. * gnu/packages/patches/clang-17.0-link-dsymutil-latomic.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Change-Id: I9dfd23d2f0fb10620c4aa73a6480151d6e6daa9a
2024-03-13gnu: cl-nodgui: Update to 0.6.0.2.cage
* gnu/packages/lisp-xyz.scm (sbcl-nodgui): Update to 0.6.0.2. [inputs]: Add sbcl-cl-opengl, sbcl-sdl2 and sbcl-zpng. Change-Id: I6fc569d4a32b1f8fc256ae17de186145caa2ac30 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-13gnu: cni-plugins: Update to 1.4.1.Tomas Volf
* gnu/packages/containers.scm (cni-plugins): Update to 1.4.1. Change-Id: I770504d4f3cf2c74cb14ce8ea37055742529db94 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-13gnu: slib: Update to 3c1.Andy Tai
* gnu/packages/scheme.scm (slib): Update to 3c1. Change-Id: Ic887b7600173f96bd2ca74c9adadf42780a18ce6 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-13gnu: zig-zls: Update to 0.10.0.terramorpha
* gnu/packages/zig-xyz.scm (zig-zls): Update to 0.10.0. [build-system]: Switch to the zig-build-system. [inputs]: Switch to zig-0.10. [arguments]: Remove #:phases and skip tests. Change-Id: Ie062067854ba1087b0394128c66e060df3ef5abf Signed-off-by: Christopher Baines <mail@cbaines.net>
generated by cgit v1.2.3 (git 2.46.2) at 2024-11-10 05:34:05 +0000