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2020-09-04gnu: r-gkmsvm: Update to 0.81.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.81.0.
2020-09-04gnu: r-chippeakanno: Update to 3.22.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.3.
2020-09-04gnu: gmic: Update to 2.9.2.Tobias Geerinckx-Rice
* gnu/packages/image-processing.scm (gmic): Update to 2.9.2.
2020-09-04gnu: cifs-utils: Update to 6.11 [fixes CVE-2020-14342].Tobias Geerinckx-Rice
* gnu/packages/samba.scm (cifs-utils): Update to 6.11.
2020-09-04gnu: python-paramiko: Update to 2.7.2.Tobias Geerinckx-Rice
* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.7.2.
2020-09-04gnu: Add texlive-logreq.Paul Garlick
* gnu/packages/tex.scm (texlive-logreq): New variable.
2020-09-04gnu: fpc: Fix reproducibility problem.Eric Bavier
* gnu/packages/pascal.scm (fpc)[arguments]: Add 'patch-release-date' to replace a build timestamp with the release date instead.
2020-09-04gnu: guix-jupyter: Fix compilation with Guile-JSON >= 4.3.x.Ludovic Courtès
Reported by wehlutyk on #guix. * gnu/packages/package-management.scm (guix-jupyter)[source]: Avoid 'define-json-mapping' name clash with Guile-JSON.
2020-09-04gnu: r-httpuv: Unvendor libuv.Lars-Dominik Braun
* gnu/packages/cran.scm (r-httpuv) [source]: Remove bundled libuv, add patch. [arguments] Rewrite header locations, fix pipe server issue. [inputs] Add libuv. * gnu/packages/patches/r-httpuv-1.5.4-unvendor-libuv.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-04gnu: taglib: Update to 1.12-beta-1 [security fixes].Pierre Langlois
This switches to a yet unreleased version of taglib, to make sure long standings issues and CVEs are covered until a proper release is made upstream. Among these, we have: - CVE-2017-12678 - CVE-2018-11439 - https://github.com/taglib/taglib/issues/864 * gnu/packges/mp3.scm (taglib): Update to 1.12-beta-1. [source]: Switch to using git-fetch.
2020-09-04gnu: node: Update 10.22.0.Pierre Langlois
* gnu/packages/node.scm (node): Update to 10.22.0. [inputs]: Replace nghttp2 with nghttp2-1.41.
2020-09-04gnu: Remove emacs-seq package.Pierre Langlois
It is included with emacs and installing it alongside emacs 27 causes issues. Fixes <https://bugs.gnu.org/43138>. * gnu/packages/emacs-xyz.scm (emacs-bugs-hunter)[propagated-inputs]: Remove. (emacs-erc-status-sidebar)[propagated-inputs]: Remove. (emacs-psc-ide)[propagated-inputs]: Remove emacs-seq. (emacs-biblio)[propagated-inputs]: Remove emacs-seq. (emacs-seq): Delete variable. (emacs-flycheck-haskell)[propagated-inputs]: Remove emacs-seq.
2020-09-04gnu: emacs-auctex: Configure executable paths.Arun Isaac
* gnu/packages/emacs-xyz.scm (emacs-auctex): Configure absolute paths to ghostscript and texlive executables. [inputs]: Add ghostscript.
2020-09-04gnu: Add emacs-org-edna.Morgan Smith
* gnu/packages/emacs-xyz.scm (emacs-org-edna): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-04gnu: txr: Update to 243.Guillaume Le Vaillant
* gnu/packages/lisp.scm (txr): Update to 243.
2020-09-04gnu: kdenlive: Add ffmpeg to input listPrafulla Giri
* gnu/packages/kde.scm (kdenlive): Add ffmpeg to inputs and wrap the final binary accordingly to have ffmpeg in it's PATH. [inputs]: Add ffmpeg. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-04.guix-authorizations: Add planglois to the committers.Ludovic Courtès
* .guix-authorizations: Add planglois.
2020-09-04gnu: darktable: Add dependency on libavif, ocl-icd.Vinicius Monego
* gnu/packages/photo.scm (darktable)[inputs]: Add libavif, ocl-icd. [arguments]: Set LD_LIBRARY_PATH for OpenCL. [supported-systems]: Remove i686 which is not supported anymore. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-04gnu: darktable: Update to 3.2.1.Vinicius Monego
* gnu/packages/photo.scm (darktable): Update to 3.2.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-04doc: Document 'file-system-label' and 'uuid'.Ludovic Courtès
* doc/guix.texi (File Systems): Document 'file-system-label' and 'uuid'.
2020-09-04doc: Syntax highlighting now handles @var within @lisp.Ludovic Courtès
* doc/build.scm (syntax-highlighted-html)[build](concatenate-pieces): Handle @var{name}.
2020-09-04doc: Balance parens in R Shiny example.Ludovic Courtès
* doc/guix.texi (Miscellaneous Services): Balance parens in R Shiny example.
2020-09-04gnu: php: Update to 7.4.10.Tobias Geerinckx-Rice
* gnu/packages/php.scm (php): Update to 7.4.10.
2020-09-04gnu: liblinphone: Add installation of man pages.Michael Rohleder
* gnu/packages/linphone.scm (liblinphone)[arguments]: Add phase 'install-man-pages. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-03gnu: linux-libre: Use Python 3 in make-linux-libre-source.Maxim Cournoyer
Successfully tested with all of the linux-libre versions we carry in Guix: 4.4.234, 4.9.234, 4.14.195, 4.19.142, 5.4.61 and 5.8.5. * gnu/packages/linux.scm (make-linux-libre-source): Replace python-2 by python-wrapper. Do not set the PYTHON environment variable, which is not required when using python-wrapper.
2020-09-03gnu: nix: Add the "--enable-gc" configure flag to fix build.Maxim Cournoyer
Fixes <http://issues.guix.gnu.org/43181>. * gnu/packages/package-management.scm (nix)[configure-flags]: Add the "--enable-gc" option.
2020-09-03ci: In the 'core' subset, build GCC >= 7.Ludovic Courtès
Suggested by Jan Nieuwenhuizen <janneke@gnu.org>. * gnu/ci.scm (%core-packages): Keep only GCC >= 7.
2020-09-03gnu: Add bitlbee-purple.Ludovic Courtès
* gnu/packages/messaging.scm (bitlbee-purple): New variable.
2020-09-03doc: Add "Getting Started" section.Ludovic Courtès
* doc/guix.texi (Getting Started): New node. (Binary Installation): Refer to it and to "Application Setup". (After System Installation): Refer to "Getting Started". (Features): Add introductory sentence.
2020-09-03gnu: linux-libre: Update to 5.8.6.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.8-version): Update to 5.8.6. (linux-libre-5.8-pristine-source): Update hash. (deblob-scripts-5.8): Update to 5.8.6.
2020-09-03gnu: linux-libre@5.4: Update to 5.4.62.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.62. (linux-libre-5.4-pristine-source): Update hash. (deblob-scripts-5.4): Update to 5.4.62.
2020-09-03gnu: linux-libre@4.19: Update to 4.19.143.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.143. (linux-libre-4.19-pristine-source): Update hash. (deblob-scripts-4.19): Update to 4.19.143.
2020-09-03gnu: linux-libre@4.14: Update to 4.14.196.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.196. (linux-libre-4.14-pristine-source): Update hash. (deblob-scripts-4.14): Update to 4.14.196.
2020-09-03gnu: linux-libre@4.9: Update to 4.9.235.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.235. (linux-libre-4.9-pristine-source): Update hash. (deblob-scripts-4.9): Update to 4.9.235.
2020-09-03gnu: linux-libre@4.4: Update to 4.4.235.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.235. (linux-libre-4.4-pristine-source): Update hash. (deblob-scripts-4.4): Update to 4.4.235.
2020-09-03gnu: inxi-minimal: Update to 3.1.06-1.Michael Rohleder
* gnu/packages/admin.scm (inxi-minimal): Update to 3.1.06-1. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-09-03gnu: global: Update to 6.6.5.Efraim Flashner
* gnu/packages/code.scm (global): Update to 6.6.5.
2020-09-03gnu: gnupg: Update to 2.2.23 [security fixes].Tobias Geerinckx-Rice
No CVE assigned yet. See <https://dev.gnupg.org/T5050>. * gnu/packages/gnupg.scm (gnupg): Update to 2.2.23.
2020-09-03gnu: ci: Truncate git commit in ISO label.Julien Lepiller
* gnu/ci.scm (image-jobs): Keep only 7 characters from git commit in ISO label.
2020-09-03gnu: Add emacs-company-reftex.Arun Isaac
* gnu/packages/emacs-xyz.scm (emacs-company-reftex): New variable.
2020-09-03gnu: electron-cash: Update to 4.1.0.Guillaume Le Vaillant
* gnu/packages/finance.scm (electron-cash): Update to 4.1.0. [inputs]: Use libsecp256k1-bitcoin-cash instead of libsecp256k1.
2020-09-03Add libsecp256k1-bitcoin-cash.Guillaume Le Vaillant
* gnu/packages/crypto.scm (libsecp256k1-bitcoin-cash): New variable.
2020-09-03gnu: noisetorch: Update to 0.7.2-beta.Michael Rohleder
* gnu/packages/pulseaudio.scm (noisetorch): Update to 0.7.2-beta. [arguments]: Add phase 'disable-update-check.go. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-03gnu: guix: Update to 44c6e6f.Ludovic Courtès
* gnu/packages/package-management.scm (guix): Update to 44c6e6f.
2020-09-02gnu: xmonad: Add patch to support dynamic linking.Timothy Sample
Fixes <https://bugs.gnu.org/43131>. * gnu/packages/patches/xmonad-dynamic-linking.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/wm.scm (xmonad)[source]: Use it.
2020-09-03android-repo-download: Use parallel-job-count instead of hard-coding jobDanny Milosavljevic
count. * guix/build/android-repo.scm (android-repo-fetch): Use parallel-job-count instead of hard-coding job count.
2020-09-03android-repo-download: Clean up typos; remove unused imports.Danny Milosavljevic
Follow-up to 3feb846420f24ef1c8b3fe310d293c7a2c91e1d4. * guix/android-repo-download.scm (android-repo-fetch): Fix docstring.
2020-09-02ssh: Fix progress bar crash when there are zero items to send.Ludovic Courtès
* guix/ssh.scm (notify-transfer-progress): Do nothing when TOTAL is zero.
2020-09-02ssh: Fix regression in 'send-files'.Ludovic Courtès
Regression introduced in b03267df6d5ec44e9617b6aab0df14a2e79f822e. The (take files 20) is a leftover from testing session. * guix/ssh.scm (send-files): Fix value for 'missing'.
2020-09-02gnu: sbcl: Update to 2.0.8.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl): Update to 2.0.8.
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