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2020-01-27gnu: r-cobs: Update to 1.3-4....* gnu/packages/cran.scm (r-cobs): Update to 1.3-4. Ricardo Wurmus
2020-01-27gnu: r-dorng: Update to 1.8.2....* gnu/packages/cran.scm (r-dorng): Update to 1.8.2. [propagated-inputs]: Remove r-pkgmaker. Ricardo Wurmus
2020-01-27gnu: r-future: Update to 1.16.0....* gnu/packages/cran.scm (r-future): Update to 1.16.0. Ricardo Wurmus
2020-01-27gnu: r-rmpfr: Update to 0.8-1....* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-1. [inputs]: Add gmp. [native-inputs]: Add pkg-config. Ricardo Wurmus
2020-01-27gnu: r-gmp: Update to 0.5-13.6....* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.6. Ricardo Wurmus
2020-01-27gnu: r-afex: Update to 0.26-0....* gnu/packages/cran.scm (r-afex): Update to 0.26-0. Ricardo Wurmus
2020-01-27gnu: r-gh: Update to 1.1.0....* gnu/packages/cran.scm (r-gh): Update to 1.1.0. [propagated-inputs]: Add r-cli. Ricardo Wurmus
2020-01-27gnu: r-sjplot: Update to 2.8.2....* gnu/packages/cran.scm (r-sjplot): Update to 2.8.2. [propagated-inputs]: Remove r-ggrepel, r-glmmtmb, r-lme4, r-magrittr, r-modelr, and r-psych. Ricardo Wurmus
2020-01-27gnu: r-effectsize: Update to 0.1.1....* gnu/packages/cran.scm (r-effectsize): Update to 0.1.1. Ricardo Wurmus
2020-01-27gnu: r-performance: Update to 0.4.3....* gnu/packages/cran.scm (r-performance): Update to 0.4.3. Ricardo Wurmus
2020-01-27gnu: r-bayestestr: Update to 0.5.1....* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.1. Ricardo Wurmus
2020-01-27gnu: r-sjstats: Update to 0.17.8....* gnu/packages/cran.scm (r-sjstats): Update to 0.17.8. [propagated-inputs]: Add r-effectsize. Ricardo Wurmus
2020-01-27gnu: r-survey: Update to 3.37....* gnu/packages/cran.scm (r-survey): Update to 3.37. Ricardo Wurmus
2020-01-27gnu: r-magick: Update to 2.3....* gnu/packages/cran.scm (r-magick): Update to 2.3. Ricardo Wurmus
2020-01-27gnu: r-sjlabelled: Update to 1.1.2....* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.2. [propagated-inputs]: Remove r-magrittr, r-purrr, r-rlang, and r-tidyselect. Ricardo Wurmus
2020-01-27gnu: r-factominer: Update to 2.1....* gnu/packages/cran.scm (r-factominer): Update to 2.1. Ricardo Wurmus
2020-01-27gnu: r-leaps: Update to 3.1....* gnu/packages/cran.scm (r-leaps): Update to 3.1. Ricardo Wurmus
2020-01-27gnu: r-vctrs: Update to 0.2.2....* gnu/packages/cran.scm (r-vctrs): Update to 0.2.2. [propagated-inputs]: Remove r-backports and r-zeallot. Ricardo Wurmus
2020-01-27gnu: r-tsp: Update to 1.1-8....* gnu/packages/cran.scm (r-tsp): Update to 1.1-8. Ricardo Wurmus
2020-01-27gnu: r-xts: Update to 0.12-0....* gnu/packages/cran.scm (r-xts): Update to 0.12-0. Ricardo Wurmus
2020-01-27gnu: r-broom: Update to 0.5.4....* gnu/packages/cran.scm (r-broom): Update to 0.5.4. Ricardo Wurmus
2020-01-27gnu: r-lpsolve: Update to 5.6.15....* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.15. Ricardo Wurmus
2020-01-27gnu: r-prettyunits: Update to 1.1.1....* gnu/packages/cran.scm (r-prettyunits): Update to 1.1.1. Ricardo Wurmus
2020-01-27gnu: r-rgooglemaps: Update to 1.4.5.2....* gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.2. Ricardo Wurmus
2020-01-27gnu: r-callr: Update to 3.4.1....* gnu/packages/cran.scm (r-callr): Update to 3.4.1. Ricardo Wurmus
2020-01-27gnu: r-diversitree: Update to 0.9-13....* gnu/packages/bioinformatics.scm (r-diversitree): Update to 0.9-13. Ricardo Wurmus
2020-01-27gnu: r-metap: Update to 1.3....* gnu/packages/bioconductor.scm (r-metap): Update to 1.3. Ricardo Wurmus
2020-01-27gnu: python-testpath: Remove incorrect #:imported-modules....Fixes <https://bugs.gnu.org/39298>. Reported by Clément Lassieur <clement@lassieur.org> and Ricardo Wurmus <rekado@elephly.net>. This pacakge would import (srfi srfi-1) from the host Guile, leading to build failures when the host Guile is 3.0. * gnu/packages/check.scm (python-testpath)[arguments]: Remove incorrect #:imported-modules. Ludovic Courtès
2020-01-27gnu: emacs-org-make-toc: Update to 0.4....* gnu/packages/emacs-xyz.scm (emacs-org-make-toc): Update to 0.4 David Wilson
2020-01-27gnu: public-inbox: Enable support for background HTTP/NNTP daemons....* gnu/packages/mail.scm (public-inbox)[inputs]: Add perl-net-server. 宋文武
2020-01-27gnu: keepassxc: Update to 2.5.3....* gnu/packages/password-utils.scm (keepassxc): Update to 2.5.3. Efraim Flashner
2020-01-27gnu: s6: Install documentation....* gnu/packages/skarnet.scm (s6)[arguments]: Add 'install-doc' phase. 宋文武
2020-01-27gnu: ocaml: Switch to ocaml 4.09 by default....Bap and earley cannot be updated as they do not support 4.09 yet. Bap requires the janestreet packages, which cannot be upgraded as no version supports 4.09 and 4.07 at the same time. Moreover, newer versions of the janestreet packages have a different dependency graph, which will require a whole new set of packages. We cannot simply use package-with-ocaml4.07 on them. * gnu/packages/ocaml.scm (ocaml-sqlite3, ocaml-ppx-tools, ocaml-gen) (ocaml-sedlex, ocaml-pcre, ocaml-expect, ocaml-ezjsonm, ocaml-uri) (ocaml-piqilib, ocaml-piqi, ocaml-charinfo-width, ocaml-zed) (ocaml-lambda-term, ocaml-utop, ocaml-ppx-inline-test, ocaml-earley) (ocaml-merlin, ocaml-gsl, ocaml-gsl-1, ocaml-sexplib0, ocaml-parsexp) (ocaml-sexplib, ocaml-base, ocaml-stdio, ocaml-ppxlib, ocaml-ppx-compare) (ocaml-fieldslib, ocaml-variantslib, ocaml-ppx-fields-conv) (ocaml-ppx-sexp-conv, ocaml-ppx-variants-conv, ocaml-ppx-custom-printf) (ocaml-bin-prot, ocaml-ppx-hash, ocaml-ppx-enumerate, ocaml-ppx-bench) (ocaml-ppx-here, ocaml-ppx-typerep, ocaml-ppx-sexp-value) (ocaml-ppx-sexp-message, ocaml-ppx-pipebang, ocaml-ppx-optional) (ocaml-ppx-optcomp, ocaml-ppx-fail, ocaml-ppx-let, ocaml-ppx-assert) (ocaml-ppx-expect, ocaml-ppx-js-style, ocaml-ppx-typerep-conv) (ocaml-ppx-base, ocaml-ppx-bin-prot, ocaml-ppx-jane) (ocaml-splittable-random, ocaml-configurator, ocaml-spawn, ocaml-core) (ocaml-core-kernel, ocaml-odoc, ocaml-fftw3, ocaml-lacaml): Rename to ... (ocaml4.07-sqlite3, ocaml4.07-ppx-tools, ocaml4.07-gen, ocaml4.07-sedlex) (ocaml4.07-pcre, ocaml4.07-expect, ocaml4.07-ezjsonm, ocaml4.07-uri) (ocaml4.07-piqilib, ocaml4.07-piqi, ocaml4.07-charinfo-width) (ocaml4.07-zed, ocaml4.07-lambda-term, ocaml4.07-utop) (ocaml4.07-ppx-inline-test, ocaml4.07-earley, ocaml4.07-merlin) (ocaml4.07-gsl, ocaml4.07-gsl-1, ocaml4.07-sexplib0, ocaml4.07-parsexp) (ocaml4.07-sexplib, ocaml4.07-base, ocaml4.07-stdio, ocaml4.07-ppxlib) (ocaml4.07-ppx-compare, ocaml4.07-fieldslib, ocaml4.07-variantslib) (ocaml4.07-ppx-fields-conv, ocaml4.07-ppx-sexp-conv) (ocaml4.07-ppx-variants-conv, ocaml4.07-ppx-custom-printf) (ocaml4.07-bin-prot, ocaml4.07-ppx-hash, ocaml4.07-ppx-enumerate) (ocaml4.07-ppx-bench, ocaml4.07-ppx-here, ocaml4.07-ppx-typerep) (ocaml4.07-ppx-sexp-value, ocaml4.07-ppx-sexp-message) (ocaml4.07-ppx-pipebang, ocaml4.07-ppx-optional, ocaml4.07-ppx-optcomp) (ocaml4.07-ppx-fail, ocaml4.07-ppx-let, ocaml4.07-ppx-assert) (ocaml4.07-ppx-expect, ocaml4.07-ppx-js-style) (ocaml4.07-ppx-typerep-conv, ocaml4.07-ppx-base, ocaml4.07-ppx-bin-prot) (ocaml4.07-ppx-jane, ocaml4.07-splittable-random) (ocaml4.07-configurator, ocaml4.07-spawn, ocaml4.07-core) (ocaml4.07-core-kernel, ocaml4.07-odoc, ocaml4.07-fftw3) (ocaml4.07-lacaml): ... to this and use ocaml 4.07. (bap, unison): Use ocaml-4.07. * gnu/packages/bioinformatics.scm (pplacer): Use ocaml-4.07. Julien Lepiller
2020-01-27guix: ocaml: Also replace dune when relevant in package-with-explicit-ocaml....* guix/build-system/ocaml.scm (package-with-explicit-ocaml): Take a dune argument and add it to transformed packages when relevant. Julien Lepiller
2020-01-27gnu: Add ocaml4.07-dune....* gnu/packages/ocaml.scm (ocaml4.07-dune): New variable. Julien Lepiller
2020-01-27gnu: Add ocaml4.07-lablgtk....* gnu/packages/ocaml.scm (ocaml4.07-lablgtk): New variable. (lablgtk)[properties]: Add variant. Julien Lepiller
2020-01-27gnu: ocambuild: Update to 0.14.0....* gnu/packages/ocaml.scm (ocamlbuild): Update to 0.14.0. [build-system]: Use ocaml-build-system. Julien Lepiller
2020-01-26gnu: pcsxr: Wrap with GSETTINGS_SCHEMA_DIR path variable....Without setting this path variable, gtk+ must be installed in the user's profile for pcsxr's GUI to work. * gnu/packages/emulators.scm (pcsxr)[arguments]: Add 'wrap-program' phase and return #t from 'cd-subdir' and 'fix-cdio-lookup' phases. Kei Kebreau
2020-01-27gnu: sicp: Remove unused module import....* gnu/packages/scheme.scm (sicp)[arguments]: Do not import (srfi srfi-1). Marius Bakke
2020-01-27gnu: emacs-org-contrib: Update to 20200126....* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 20200126. Nicolas Goaziou
2020-01-26gnu: emacs-org: Update to 9.3.2....* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.3.2. Nicolas Goaziou
2020-01-26gnu: emacs-modus-themes: Update to 0.4.0....* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 0.4.0. Nicolas Goaziou
2020-01-26Revert "gnu: Add python-pathtools."...This package was already in Guix since commit dbcef44a0bdc5472cd49cd02d9d11a9c5ff037c9. This reverts commit 87435943d1cf082b64fd2ee581e9db85b373ddb9. Marius Bakke
2020-01-26Revert "gnu: Add python-iocapture."...This package was already in Guix since commit dbcef44a0bdc5472cd49cd02d9d11a9c5ff037c9. This reverts commit 2cb4ee2787281b0c155ab4794fa1251652251d3b. Marius Bakke
2020-01-26Revert "gnu: Add python-argh."...This package was already in Guix since commit db6bd842aa4a6254b185740bda36f01c83cd9779. This reverts commit fb4db07467fb764e7df64a4aacae13eaaf7f912c. Marius Bakke
2020-01-26guix-install.sh: Correctly treat empty or unset $XDG_DATA_DIRS...If $XDG_DATA_DIRS is unset, default value of "/usr/local/share:/usr/share" is used according to XDG Base Directory Specification. However, /etc/profile.d/guix.sh treats this value as empty list when appending its own directory, so after installing Guix on the system, launchers such as Rofi stop searching for .desktop files in /usr/share/applications/ and can't launch applications other than those installed with Guix. This patch fixes the bug in generated /etc/profile.d/guix.sh * etc/guix-install.sh (sys_create_init_profile): Use default value of /usr/local/share:/usr/share/ before appending if $XDG_DATA_DIRS is not set. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Alexander Krotov
2020-01-26guix-install.sh: Create /etc/profile.d if it does not exist...* etc/guix-install.sh (sys_create_init_profile): Add code to create /etc/profile.d if it somehow does not exist; the function still carries on because it is possible that /etc/profile is still configured to read the *.sh files from /etc/profile.d, if they exist. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Prafulla Giri
2020-01-26guix-install.sh: Export INFOPATH to contain updated guix info-pages...* etc/guix-install.sh (sys_create_init_profile): Export INFOPATH to include the updated info-pages from ~/.config/guix/current/share/info. This also makes sure that both /usr/bin/info and $GUIX_PROFILE/bin/info can read guix info pages without throwing "no menu item 'guix' in node dir(Top)" error. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Prafulla Giri
2020-01-26gnu: mailutils: Add "guile3.0-mailutils" variant....* gnu/packages/mail.scm (mailutils)[arguments]: In #:configure-flags, replace hard-coded "2.2" with the 'version-major+minor' of the "guile" input. (guile3.0-mailutils): New variable. Ludovic Courtès
2020-01-26gnu: Add emacs-vterm....* gnu/packages/emacs-xyz.scm (emacs-vterm): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Joseph LaFreniere