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2019-07-26git: 'switch-to-ref' resolves tag targets.Ludovic Courtès
* guix/git.scm (switch-to-ref): In the 'tag' case, resolve the target of the tag. * tests/guix-build-branch.sh: Adjust test accordingly.
2019-07-26git: <git-checkout> allows tags in its 'commit' field.Ludovic Courtès
Fixes <https://bugs.gnu.org/36371>. Reported by Tobias Geerinckx-Rice <me@tobias.gr>. * guix/git.scm (git-checkout-compiler): Pass 'tag-or-commit' to 'latest-repository-commit*'. * doc/guix.texi (Package Transformation Options): Update '--with-commit' documentation accordingly. * tests/guix-build-branch.sh: Add test.
2019-07-26git: 'update-cached-checkout' supports a 'tag-or-commit' type of ref.Ludovic Courtès
* guix/git.scm (switch-to-ref)[obj]: Wrap in 'resolve' lambda. Add 'tag-or-commit' case. (update-cached-checkout): Document it.
2019-07-26gnu: jami-client-gnome: Rename to 'jami'.Ludovic Courtès
* gnu/packages/telephony.scm (jami-client-gnome): Rename to... (jami): ... this. Update 'name' field accordingly. (jami-client-gnome): New variable.
2019-07-26gnu: vlc: Update to 3.0.7.1.Tobias Geerinckx-Rice
* gnu/packages/video.scm (vlc): Update to 3.0.7.1.
2019-07-26gnu: clusterssh: Run.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (clusterssh)[arguments]: Add ’augment-library-path’ phase so libraries are found. [propagated-inputs]: Make all of these… [inputs]: …regular.
2019-07-26gnu: youtube-dl: Update to 2019.07.16.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-dl): Update to 2019.07.16.
2019-07-26gnu: dkimproxy: Fix dkim_responder.pl.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (dkimproxy)[arguments]: Wrap dkim_responder.pl. [inputs]: Add perl-mime-tools and perl-timedate.
2019-07-26gnu: dkimproxy: Factorise wrapping.Tobias Geerinckx-Rice
This is a follow-up to 66e39000c612a9e16e6db709954582c6c0db8499, in a way, since it adds the forgotten *6 inputs. * gnu/packages/mail.scm (dkimproxy)[arguments]: Refactor ’make-wrapper’ phase. Add perl-io-socket-inet6 and perl-socket6 to the list.
2019-07-26gnu: dkimproxy: Keyword-stuff descriptions.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (dkimproxy)[synopsis]: Do so. [description]: Also.
2019-07-25gnu: perl-net-dns-resolver-mock: Edit synopsis & description.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (perl-net-dns-resolver-mock)[synopsis]: Remove unfortunate ‘a’. [description]: Fix typo. Edit for clarity.
2019-07-25gnu: perl-net-dns-resolver-mock: Unpropagate perl-net-dns.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (perl-net-dns-resolver-mock)[inputs]: Move perl-net-dns to here… [propagated-inputs]: …from here.
2019-07-25gnu: dkimproxy: Correct licence.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (dkimproxy)[license]: Change to gpl2+.
2019-07-25gnu: dkimproxy: Add IPv6 support.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (dkimproxy)[source]: Add patch. * gnu/packages/patches/dkimproxy-add-ipv6-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-07-25gnu: libvirt: Don't use bogus cgroup.Tobias Geerinckx-Rice
Should fix <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36634>. * gnu/packages/virtualization.scm (libvirt)[source]: Add patch. * gnu/packages/patches/libvirt-remove-ATTRIBUTE_UNUSED.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-07-25gnu: clusterssh: Don't propagate xterm.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (clusterssh)[arguments]: Add ‘refer-to-inputs’ and ‘delete-failing-tests’ phases. [inputs]: Move xterm to here… [propagated-inputs]: …from here.
2019-07-25gnu: clustershh: Add missing perl-sort-naturally input.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (clusterssh)[propagated-inputs]: Add perl-sort-naturally.
2019-07-25gnu: Add dkimproxy.Julien Lepiller
* gnu/packages/mail.scm (dkimproxy): New variable.
2019-07-25gnu: Add perl-mail-dkim.Julien Lepiller
* gnu/packages/mail.scm (perl-mail-dkim): New variable.
2019-07-25gnu: Add perl-net-dns-resolver-mock.Julien Lepiller
* gnu/packages/networking.scm (perl-net-dns-resolver-mock): New variable.
2019-07-25gnu: Add perl-mail-authenticationresults.Julien Lepiller
* gnu/packages/mail.scm (perl-mail-authenticationresults): New variable.
2019-07-25gnu: Go 1.12: Update to 1.12.7.Leo Famulari
* gnu/packages/golang.scm (go-1.12): Update to 1.12.7.
2019-07-25gnu: Go 1.11: Update to 1.11.12.Leo Famulari
* gnu/packages/golang.scm (go-1.11): Update to 1.11.12.
2019-07-25gnu: exim: Update to 4.92.1 [fixes CVE-2019-13917].Tobias Geerinckx-Rice
* gnu/packages/mail.scm (exim): Update to 4.92.1.
2019-07-25gnu: xpra: Update to 2.5.3.Rutger Helling
* gnu/packages/xorg.scm (xpra): Update to 2.5.3.
2019-07-25gnu: Add xchm.Jovany Leandro G.C
* gnu/packages/ebook.scm (xchm): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: starfighter: Update to 2.0.0.3.Kei Kebreau
* gnu/packages/games.scm (starfighter): Update to 2.0.0.3. [source]: Use url-fetch and remove 'file-name' field. [native-inputs]: Remove autoconf and automake.
2019-07-25gnu: Explicitly refer to 'guile-json-1' when needed.Ludovic Courtès
* gnu/packages/bioinformatics.scm (rcas-web)[inputs]: Change 'guile-json' to 'guile-json-1'. * gnu/packages/ci.scm (cuirass)[inputs]: Likewise. * gnu/packages/guile-xyz.scm (artanis)[inputs]: Likewise. * gnu/packages/guile-xyz.scm (jupyter-guile-kernel)[inputs]: Likewise. * gnu/packages/guile-xyz.scm (guile-mastodon)[inputs]: Likewise. * gnu/packages/mail.scm (mumi)[inputs]: Likewise. * gnu/packages/package-management.scm (guix)[inputs]: Likewise. * gnu/packages/package-management.scm (guix-daemon)[inputs]: Likewise. * gnu/packages/web.scm (hpcguix-web)[inputs]: Likewise.
2019-07-25gnu: guile-json: Define 'guile-json-1'.Ludovic Courtès
* gnu/packages/guile.scm (guile-json-1): New variable.
2019-07-25maint: Switch to Guile-JSON 3.x.Ludovic Courtès
Guile-JSON 3.x is incompatible with Guile-JSON 1.x, which we relied on until now: it maps JSON dictionaries to alists (instead of hash tables), and JSON arrays to vectors (instead of lists). This commit is about adjusting all the existing code to this new mapping. * m4/guix.m4 (GUIX_CHECK_GUILE_JSON): New macro. * configure.ac: Use it. * doc/guix.texi (Requirements): Mention the Guile-JSON version. * guix/git-download.scm (git-fetch)[guile-json]: Use GUILE-JSON-3. * guix/import/cpan.scm (string->license): Expect vectors instead of lists. (module->dist-name): Use 'json-fetch' instead of 'json-fetch-alist'. (cpan-fetch): Likewise. * guix/import/crate.scm (crate-fetch): Likewise, and call 'vector->list' for DEPS. * guix/import/gem.scm (rubygems-fetch): Likewise. * guix/import/json.scm (json-fetch-alist): Remove. * guix/import/pypi.scm (pypi-fetch): Use 'json-fetch' instead of 'json-fetch-alist'. (latest-source-release, latest-wheel-release): Call 'vector->list' on RELEASES. * guix/import/stackage.scm (stackage-lts-info-fetch): Use 'json-fetch' instead of 'json-fetch-alist'. (lts-package-version): Use 'vector->list'. * guix/import/utils.scm (hash-table->alist): Remove. (alist->package): Pass 'vector->list' on the inputs fields, and default to the empty vector. * guix/scripts/import/json.scm (guix-import-json): Remove call to 'hash-table->alist'. * guix/swh.scm (define-json-reader): Expect pair? or null? instead of hash-table?. [extract-field]: Use 'assoc-ref' instead of 'hash-ref'. (json->branches): Use 'map' instead of 'hash-map->list'. (json->checksums): Likewise. (json->directory-entries, origin-visits): Call 'vector->list' on the result of 'json->scm'. * tests/import-utils.scm ("alist->package with dependencies"): New test. * gnu/installer.scm (build-compiled-file)[builder]: Use GUILE-JSON-3. * gnu/installer.scm (installer-program)[installer-builder]: Likewise. * gnu/installer/locale.scm (iso639->iso639-languages): Use 'assoc-ref' instead of 'hash-ref', and pass vectors through 'vector->list'. (iso3166->iso3166-territories): Likewise. * gnu/system/vm.scm (system-docker-image)[build]: Use GUILE-JSON-3. * guix/docker.scm (manifest, config): Adjust for Guile-JSON 3. * guix/scripts/pack.scm (docker-image)[build]: Use GUILE-JSON-3. * guix/import/github.scm (fetch-releases-or-tags): Update docstring. (latest-released-version): Use 'assoc-ref' instead of 'hash-ref'. Pass the result of 'fetch-releases-or-tags' to 'vector->list'. * guix/import/launchpad.scm (latest-released-version): Likewise.
2019-07-24gnu: Add r-depecher.zimoun
* gnu/packages/bioconductor.scm (r-depecher): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-mixomics.zimoun
* gnu/packages/bioconductor.scm (r-mixomics): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-flowsom.zimoun
* gnu/packages/bioconductor.scm (r-flowsom): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-flowmeans.zimoun
* gnu/packages/bioconductor.scm (r-flowmeans): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-consensusclusterplus.zimoun
* gnu/packages/bioconductor.scm (r-consensusclusterplus): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-flowutils.zimoun
* gnu/packages/bioconductor.scm (r-flowutils): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-flowcore.zimoun
* gnu/packages/bioconductor.scm (r-flowcore): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-all.zimoun
* gnu/packages/bioconductor.scm (r-all): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-kableextra.zimoun
* gnu/packages/cran.scm (r-kableextra): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: Add r-umap.zimoun
* gnu/packages/cran.scm (r-umap): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-07-24gnu: emacs-gitpatch: Update to 0.5.1.Jelle Licht
* gnu/packages/emacs-xyz.scm (emacs-gitpatch): Update to 0.5.1.
2019-07-24gnu: terminator: Propagate gsettings-desktop-schemas.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (terminator)[propagated-inputs]: Add gsettings-desktop-schemas.
2019-07-24gnu: spice-gtk: Update to 0.37.Tobias Geerinckx-Rice
* gnu/packages/spice.scm (spice-gtk): Update to 0.37. [propagated-inputs]: Use latest spice-protocol. (spice-protocol-0.12): Remove unused variable.
2019-07-24gnu: libvirt-glib: Propagate pkg-config requirements.Tobias Geerinckx-Rice
* gnu/packages/virtualization.scm (libvirt-glib)[inputs]: Move glib, libvirt, libxml2, and gobject-introspection… [native-inputs]: …here.
2019-07-24gnu: libvirt-glib: Update to 2.0.0.Tobias Geerinckx-Rice
* gnu/packages/virtualization.scm (libvirt-glib): Update to 2.0.0. [arguments]: Remove ‘fix-tests’ phase.
2019-07-24doc: Warn about GPG warning.Leo Famulari
* doc/guix.texi (Binary Installation, USB Stick and DVD Installation): Warn users about the web-of-trust untrusted key warning from GPG.
2019-07-24deploy: Handle the '--system' command line option.宋文武
* guix/scripts/deploy.scm (show-help): Add help for '--system'. (%options): Add '-s' and '--system'. (guix-deploy): Parameterize %current-system.
2019-07-24deploy: Honor '--no-grafts'.宋文武
* guix/scripts/deploy.scm (guix-deploy): Parameterize '%graft?'.
2019-07-24gnu: julia: Update to 1.1.1.Nicolò Balzarotti
* gnu/packages/julia.scm (libuv-julia): Update to commit 26dbe56. (libunwind-for-julia): Remove. (llvm-patch-url, llvm-patch): New procedures. (llvm-julia): New variable. (julia): Update to 1.1.1. [arguments]: Adjust 'prepare-deps' to new set of dependencies. Adjust 'hardcode-soname-map': remove openlibm and libfftw handling. Update file names in 'fix-include-and-link-paths' and 'hardcode-paths'. Adjust 'disable-broken-tests'. Pass PREFIX, LIBFLAS, and LIBBLASNAME in #:make-flags; update other flags. [inputs]: Replace LLVM-3.9.1 with LLVM-JULIA. Replace LIBUNWIND-FOR-JULIA with LIBUNWIND. Add "rmath" and "libwhich". [native-inputs]: Remove "unicode-data". Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-07-24gnu: llvm: Add 'system->llvm-target' procedure.Ludovic Courtès
* gnu/packages/llvm.scm (system->llvm-target): New procedure.
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