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2024-02-10gnu: openmolar-1: Update to release 1.1.6-g81838c8 and partial runtime fix.Marco Rimoldi
Fixes <https://issues.guix.gnu.org/29365>. WebKit was removed from Qt5 in favor of WebEngine; upstream addressed this in their last stable release, in 2018. The package still fails at runtime: this commit lays the ground for further fixes. * gnu/packages/medical.scm (openmolar-1): Update to release 1.1.6-g81838c8. [arguments]: Extend 'patch-/usr phase to source file localsettings.py. [inputs]: Add python-pyqtwebengine. [propagated-inputs]: Add qtwebengine-5. Change-Id: Ia4e4c052397201c26834dec2358ca5c20beb581d Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-02-10gnu: Add python-scikit-opt.TimotheeMathieu
* gnu/packages/python-science.scm (python-scikit-opt): New variable. Change-Id: I47d6b35d9658a37a242b4db61d293fa7efd33802 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-02-10gnu: gnupg: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/gnupg.scm (gnupg)[arguments]: Pass libraries prefixes when cross-crompiling. Change-Id: I461ba02ddf5bb23277bd6685c2106e4ad37e2184 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-02-10gnu: vim: Update to 9.1.0059.Nguyễn Gia Phong
* gnu/packages/vim.scm (vim): Update to 9.1.0059. Change-Id: Idf89d04a6c4e2297bcaad7a8b275de4a124001a9 Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2024-02-10gnu: emulators: Adjust copyright header.Sharlatan Hellseher
This is follow up commit 9ffdcb249278d9bb95ffb6c6e9f94b675bb1068c. * gnu/packages/emulators.scm: Update copyright for "Felix Gruber <felgru@posteo.net>". * gnu/packages/simulation.scm: Remove "Copyright © 2024 Felix Gruber <felgru@posteo.net>". Change-Id: I3f39abb0fbe05e7c6af9715fb6cc41c20b6f0a45
2024-02-10gnu: fcft: Enable shaping support.Sören Tempel
While utf8proc is an optional dependency, it is required for shaping support. Without utf8proc, fcft_rasterize_text_run_utf32() is a no-op. This is a popular function used—among other things—by yambar, foot, fuzzel and fnott. Therefore, many other Linux distributions (Arch, Debian, Fedora, …) enable this feature and I think it would be nice to have in Guix as well. * gnu/packages/fontutils.scm (fcft): Depend on utf8proc. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I7489dbc7a42ffcca509d090df7d2a6250bf996ff
2024-02-10gnu: lldb: Update to 17.0.6.Greg Hogan
* gnu/packages/llvm.scm (lldb): Update to 17.0.6. [inputs]: Change from LLVM-15 and CLANG-15 to LLVM-17 and CLANG-17. Change-Id: Iad04ee722c81ecb223ea4d57d25ea57ca7df59a0 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-10gnu: odamex: Remove package labels.Sharlatan Hellseher
* gnu/packages/games.scm (odamex) [inputs]: Remove labels. Change-Id: Ie4b97a3dfaa3a0ce3a0e7c5c49ed52fe4e222480
2024-02-10gnu: odamex: Unbundle some libraries.Sharlatan Hellseher
* gnu/packages/games.scm (odamex) [snippet]: Remove some bundled libraries which may be replaced by inputs. [arguments] <#:configure-flags>: Add options to build client, master and server. Do not use internal libs explicitly. [native-inputs]: Add pkg-config. Change-Id: I1974febb2f5f37d963ecb5b663d17a330ba23129
2024-02-10gnu: odamex: Update to 10.4.0.David Pflug
* gnu/packages/games.scm (odamex): Update to 10.4.0. [inputs]: Add fltk, jsoncpp, libpng, miniupnpc, portmidi and protobuf. Change-Id: I371d18498640e15a7bfae527fea12d9432368f50 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-10gnu: sameboy: Update to 0.16.2.Felix Gruber
* gnu/packages/emulators.scm (sameboy): Update to 0.16.2. Change-Id: I86a31cfca9e69d63d3cb6a13d5db88a6b1abe2a8 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-10gnu: ocrad: Update to 0.29Andy Tai
* gnu/packages/ocr.scm (ocrad): Update to 0.29 Change-Id: I9069a4b20016ed38961cd2606a841933b3151e1a Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-10gnu: sssd: Update to 2.9.4.Timotej Lazar
* gnu/packages/sssd.scm (sssd): Update to 2.9.4. Change-Id: Ib5a4e03c4c732d362f8095aeb72509cfd6e7c4a1 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-02-10gnu: r-desctools: Update to 0.99.54.Ricardo Wurmus
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.54. Change-Id: Ic2f1a625021f11f83bacae0454c50e52551e01cf
2024-02-10gnu: r-tclust: Update to 1.5-6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tclust): Update to 1.5-6. Change-Id: Ic456aba29495c670f9a9be8ae9257017730cf1f2
2024-02-10gnu: r-robust: Update to 0.7-4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-robust): Update to 0.7-4. Change-Id: I038772a5d83c9a0e40a4aa24a8bd8cabc3ff623a
2024-02-10gnu: r-ggthemes: Update to 5.1.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ggthemes): Update to 5.1.0. Change-Id: I8eb945aea1aeba6d61d9d03497ba1e3095caa9dd
2024-02-10gnu: r-gplots: Update to 3.1.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gplots): Update to 3.1.3.1. Change-Id: Ie8a457837a9f59a98507921c559ff981e876f64a
2024-02-10gnu: r-rcpparmadillo: Update to 0.12.8.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.8.0.0. Change-Id: I42e39e8c8c25d068378f2a8e8743b4b77c61cdc4
2024-02-10gnu: r-seqminer: Update to 9.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-seqminer): Update to 9.4. Change-Id: I38a72f26363440e79aff6c4262c5d856d7ed96c9
2024-02-10gnu: r-spatstat-linnet: Update to 3.1-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.1-4. Change-Id: I60eff13181a3f7b65c3904f185f22820b33fec4d
2024-02-10gnu: r-spatstat-model: Update to 3.2-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-model): Update to 3.2-10. Change-Id: I38663d7ae11711d91d503892b4443086be812ca3
2024-02-10gnu: r-hardhat: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-hardhat): Update to 1.3.1. Change-Id: I2e2ee02f48e6b0531caeabb85e1c34535092c3cb
2024-02-10gnu: r-distributional: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-distributional): Update to 0.4.0. [propagated-inputs]: Remove r-digest, r-farver, r-ggplot2, and r-scales. Change-Id: Ic83e5ba2972dd32b1bbc69aad1e241739ce12480
2024-02-10gnu: r-aws: Update to 2.5-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-aws): Update to 2.5-5. Change-Id: I39f0394bfed327c04c275e1c42d2d47b2cef27fe
2024-02-10gnu: r-lisreltor: Update to 0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-lisreltor): Update to 0.3. Change-Id: I423e7116d80f236c39a3f30d4f9e3717658433a9
2024-02-10gnu: r-lim: Update to 1.4.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-lim): Update to 1.4.7.1. Change-Id: Ibe9c04b0f0e7109f9e01f4902f034175da933fb6
2024-02-10gnu: r-idpmisc: Update to 1.1.21.Ricardo Wurmus
* gnu/packages/cran.scm (r-idpmisc): Update to 1.1.21. Change-Id: I5acf372d08a8a7829bd3d2f6e17897234bf0856a
2024-02-10gnu: r-smpracticals: Update to 1.4-3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-smpracticals): Update to 1.4-3.1. Change-Id: I200db8be3842c8716a3e5583a43b975294e5e03e
2024-02-10gnu: r-parameters: Update to 0.21.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.21.5. Change-Id: If0de907fd0f0004468f3dcb4f4f5ca438a380c56
2024-02-10gnu: r-plot3d: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-plot3d): Update to 1.4.1. Change-Id: I5734b726f80b5ac06b217d0bcee90f1584823bfc
2024-02-10gnu: r-ggnewscale: Update to 0.4.10.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggnewscale): Update to 0.4.10. Change-Id: Icb68ac0a8ee0cf780b077869e9c6adbf53a2bb39
2024-02-10gnu: r-ggvis: Update to 0.4.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggvis): Update to 0.4.9. Change-Id: Iacdffbfb6ca558a3e1979bf63e76c04909924310
2024-02-10gnu: r-haplo-stats: Update to 1.9.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-haplo-stats): Update to 1.9.5.1. Change-Id: I9b0111e471f88766ccc2096cb65720f9716ad1a2
2024-02-10gnu: r-spdep: Update to 1.3-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-spdep): Update to 1.3-3. Change-Id: Iab08e69f7a8bb5163a8dc5bd042ea19709316563
2024-02-10gnu: r-lemon: Update to 0.4.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-lemon): Update to 0.4.9. Change-Id: I31e9a3ae0e1e40bbf7806f891b26a7be13d1d346
2024-02-10gnu: r-remacor: Update to 0.0.18.Ricardo Wurmus
* gnu/packages/cran.scm (r-remacor): Update to 0.0.18. Change-Id: I20b0441a601a03cbfe3fa99382913491c73b267f
2024-02-10gnu: r-cobs: Update to 1.3-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-cobs): Update to 1.3-7. Change-Id: I2f3cdef942b6875e5072b7802871308cff78b090
2024-02-10gnu: r-rnaturalearthdata: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rnaturalearthdata): Update to 1.0.0. [propagated-inputs]: Remove r-sp. Change-Id: Ib649f9242b14aa2c167ce480c768d2e4a1f98a88
2024-02-10gnu: r-multicool: Update to 1.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-multicool): Update to 1.0.1. Change-Id: I347ada2b10281ddc90a0e0cf5859fc0dbedea7e0
2024-02-10gnu: r-rcpphnsw: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcpphnsw): Update to 0.6.0. Change-Id: Id6e99e2a081b73711f3e4f64a00c0d205a8aa9f5
2024-02-10gnu: r-ggeffects: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggeffects): Update to 1.4.0. Change-Id: I61183ed38aeae82b40d4c5479d13e7e5d9a60e4a
2024-02-10gnu: r-tarchetypes: Update to 0.7.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.12. Change-Id: Ib20dda1be9bfd9c6f7f36876303686e0be3a01b2
2024-02-10gnu: r-writexl: Update to 1.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-writexl): Update to 1.5.0. Change-Id: I5561f74f174dc3a803c63210cefed334cb4f7282
2024-02-10gnu: r-nodbi: Update to 0.10.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-nodbi): Update to 0.10.1. Change-Id: Iddd501fa36d0765cf24832531009da277abe97b4
2024-02-10gnu: r-officer: Update to 0.6.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-officer): Update to 0.6.4. Change-Id: I71997fa352044fa48ae26193bbc6e2a6d0efc344
2024-02-10gnu: r-ggseqlogo: Update to 0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggseqlogo): Update to 0.2. [native-inputs]: Add r-knitr. Change-Id: Ia2cea22a0bd5f6c96303b82207dcbe6678d7d0c3
2024-02-10gnu: r-xfun: Update to 0.42.Ricardo Wurmus
* gnu/packages/cran.scm (r-xfun): Update to 0.42. Change-Id: I3e43a59fcaf2a50595c2efa11a0c9aaf11973170
2024-02-10gnu: r-cvxr: Update to 1.0-12.Ricardo Wurmus
* gnu/packages/cran.scm (r-cvxr): Update to 1.0-12. Change-Id: I94c8f094cbdac0c9533ffd604fc3b7a1b6fdac77
2024-02-10gnu: r-limsolve: Update to 1.5.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-limsolve): Update to 1.5.7.1. Change-Id: I12c1e939457aa272bdf073ad760b156c263f2196