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2023-05-13services: shepherd: Default to 0.10....* gnu/services/shepherd.scm (<shepherd-configuration>)[shepherd]: Default to SHEPHERD-0.10. * gnu/home/services/shepherd.scm (<home-shepherd-configuration>)[shepherd]: Likewise. Ludovic Courtès
2023-05-13gnu: shepherd: Add 0.10.0....* gnu/packages/admin.scm (shepherd-0.10): New variable. (guile2.2-shepherd): Inherit from SHEPHERD-0.10. Ludovic Courtès
2023-05-13gnu: python-sentry-sdk: Disable tests not working with pytest-7....* gnu/packages/python-xyz.scm (python-sentry-sdk)[arguments]: Update 'check' phase. Guillaume Le Vaillant
2023-05-13gnu: guile-opengl: Update to 0.2.0....* gnu/packages/gl.scm (guile-opengl): Update to 0.2.0. Remove obsolete build system hack. (guile3.0-opengl): Remove obsolete build system hack. David Thompson
2023-05-13gnu: diffoscope: Update to 242....* gnu/packages/diffoscope.scm (diffoscope): Update to 242. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Vagrant Cascadian
2023-05-13services: nar-herder: Support extra environment vars....* gnu/services/guix.scm (nar-herder-configuration-extra-environment-variables): New procedure. (nar-herder-shepherd-services): Pass the environment variables to the shepherd. * doc/guix.texi (Guix Services): Document it. Christopher Baines
2023-05-13gnu: ftxui: Build ftxui-benchmark....* gnu/packages/cpp.scm (ftxui)[native-inputs]: Add benchmark. [arguments]: Remove #:phases. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Artyom V. Poptsov
2023-05-13gnu: raylib: Fix audio and use system glfw....* gnu/packages/game-development.scm (raylib)[inputs]: Use glfw and pluseaudio. [arguments]: Set flags for glfw and pulseaudio. 宋文武
2023-05-13gnu: raylib: Update to 4.5.0....* gnu/packages/game-development.scm (raylib): Update to 4.5.0. 宋文武
2023-05-13gnu: python-rapidjson: Use pyproject-build-system....* gnu/packages/python-web.scm (python-rapidjson)[build-system]: Use pyproject-build-system. [arguments]: Do not use custom 'build and 'check phases. Ricardo Wurmus
2023-05-13gnu: python-markdown-it-py: Simplify by using pyproject-build-system....* gnu/packages/python-xyz.scm (python-markdown-it-py)[arguments]: Remove custom 'build and 'install phases. [build-system]: Use pyproject-build-system. Ricardo Wurmus
2023-05-13gnu: python-sphinx-panels: Use older docutils....* gnu/packages/sphinx.scm (python-sphinx-panels)[propagated-inputs]: Replace python-docutils with python-docutils-0.15. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase. Ricardo Wurmus
2023-05-13gnu: ghc-tasty: Add missing dependency on i686-linux....Fixes <https://issues.guix.gnu.org/63421>. * gnu/packages/haskell-check.scm (ghc-tasty)[inputs]: Conditionally add ghc-unbounded-delays. Lars-Dominik Braun
2023-05-12gnu: python-orjson: Fix version string of Python module....* gnu/packages/python-xyz.scm (python-orjson)[arguments]: Remove invalid characters from version string. Ricardo Wurmus
2023-05-12gnu: python-orjson: Reuse phases from pyproject-build-system....* gnu/packages/python-xyz.scm (python-orjson)[arguments]: Include modules from pyproject-build-system; use their 'build and 'install phases instead of duplicating their contents. Ricardo Wurmus
2023-05-12gnu: python-canonicaljson: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-canonicaljson)[arguments]: Remove custom 'build, 'check, and 'install phases. [build-system]: Use pyproject-build-system. Ricardo Wurmus
2023-05-12gnu: python-pyproject-metadata: Simplify by using pyproject-build-system....* gnu/packages/python-xyz.scm (python-pyproject-metadata)[arguments]: Remove. [build-system]: Use pyproject-build-system. Ricardo Wurmus
2023-05-12gnu: python-seaborn: Simplify by using pyproject-build-system....* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Remove. [build-system]: Use pyproject-build-system. Ricardo Wurmus
2023-05-12gnu: shrinkwrap: Use pyproject-build-system....* gnu/packages/python-xyz.scm (shrinkwrap)[arguments]: Remove. [build-system]: Use pyproject-build-system. Ricardo Wurmus
2023-05-12gnu: jamm: Use G-expression....* gnu/packages/bioinformatics.scm (jamm)[arguments]: Use G-expression. Ricardo Wurmus
2023-05-12gnu: arriba: Use SEARCH-INPUT-FILE and -DIRECTORY....* gnu/packages/bioinformatics.scm (arriba)[arguments]: Use SEARCH-INPUT-DIRECTORY and SEARCH-INPUT-FILE; use G-expression; drop trailing #T from build phases. Ricardo Wurmus
2023-05-12gnu: multichoose: Clean up....* gnu/packages/bioinformatics.scm (multichoos): Fix indentation. [arguments]: Use G-expression. Ricardo Wurmus
2023-05-12gnu: samblaster: Update to 0.1.26....* gnu/packages/bioinformatics.scm (samblaster): Update to 0.1.26. Ricardo Wurmus
2023-05-12gnu: samblaster: Simplify....* gnu/packages/bioinformatics.scm (samblaster): Fix indentation. [arguments]: Use G-expression; drop trailing #T from 'install phase. [description]: Use double spacing between all sentences. Ricardo Wurmus
2023-05-12gnu: methyldackel: Update to 0.6.1....* gnu/packages/bioinformatics.scm (methyldackel): Update to 0.6.1. [arguments]: Set LIBBIGWIG variable instead of patching Makefile. [inputs]: Replace htslib-1.9 with htslib. Ricardo Wurmus
2023-05-12gnu: methyldackel: Simplify arguments....* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Use list, drop argument list. [native-inputs]: Drop package label. Ricardo Wurmus
2023-05-12gnu: phast: Simplify by using G-expression....* gnu/packages/bioinformatics.scm (phast)[arguments]: Use G-expression and drop trailing #T from build phases. Ricardo Wurmus
2023-05-12gnu: ribotaper: Simplify with G-expression....* gnu/packages/bioinformatics.scm (ribotaper)[arguments]: Use G-expression and drop trailing #T from build phase. Ricardo Wurmus
2023-05-12gnu: sra-tools: Do link with libxml2....* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use G-expression for clarity; drop trailing #T from build phases; modify 'configure phase to dynamically link with libxml2. [inputs]: Drop package labels; add libxml2. Ricardo Wurmus
2023-05-12gnu: ncbi-vdb: Ensure that vdb-sqlite is installed....The most important change here is the addition of the 'install-libs phase. All other changes are just the result of switching to G-expressions. * gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add 'install-libs phase; use G-expression; drop trailing #T from build phases. [inputs]: Drop package labels. Ricardo Wurmus
2023-05-12gnu: Add python-mgatk....* gnu/packages/bioinformatics.scm (python-mgatk): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2023-05-12system: default-skeletons: Merge search-paths of multiple profiles....Fixes <https://issues.guix.gnu.org/20255>. * gnu/system/shadow.scm (default-skeletons)[bash_profile, zprofile]: Merge search-paths from multiple profiles via "guix package". 宋文武
2023-05-12gnu: Add Free as in Freedom (2.0)....* gnu/packages/fsf.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. 宋文武
2023-05-12gnu: sbcl-serapeum: Update to 20230511....* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 20230511. Pierre Neidhardt
2023-05-12gnu: python-lightning-cloud: Use older version of fastapi....The variant of the fastapi package must match that of python-pytorch-lightning. * gnu/packages/machine-learning.scm (python-lightning-cloud) [propagated-inputs]: Replace python-fastapi with python-fastapi-for-pytorch-lightning. Ricardo Wurmus
2023-05-12gnu: Add python-optparse-pretty....* gnu/packages/python-xyz.scm (python-optparse-pretty): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2023-05-12gnu: Add r-dropletutils....* gnu/packages/bioconductor.scm (r-dropletutils): New variable. Mădălin Ionel Patrașcu
2023-05-12gnu: Add r-ggpattern....* gnu/packages/cran.scm (r-ggpattern): New variable. Mădălin Ionel Patrașcu
2023-05-12gnu: Add r-gridpattern....* gnu/packages/cran.scm (r-gridpattern): New variable. Mădălin Ionel Patrașcu
2023-05-11gnu: texlive-datetime2: Add needed propagated-inputs....Required packages can be seen with: $ rg RequirePackage $(guix build texlive-datetime2) * gnu/packages/tex.scm (texlive-datetime2)[propagated-inputs]: Add TEXLIVE-ETOOLBOX, TEXLIVE-LATEX-XKEYVAL, and TEXLIVE-TRACKLANG. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Greg Hogan
2023-05-11gnu: Add emacs-framemove....* gnu/packages/emacs-xyz.scm (emacs-framemove): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Fabio Natali
2023-05-11gnu: texlive-ddphonism: Replace deprecated input....* gnu/packages/tex.scm (texlive-ddphonism)[propagated-inputs]: Replace deprecated texlive-latex-tools by texlive-tools. Signed-off-by: Josselin Poiret <dev@jpoiret.xyz> Simon Tournier
2023-05-11gnu: texlive-totpages: Replace deprecated input....* gnu/packages/tex.scm (texlive-totpages)[propagated-inputs]: Replace deprecated texlive-latex-graphics by texlive-graphics. Signed-off-by: Josselin Poiret <dev@jpoiret.xyz> Simon Tournier
2023-05-11gnu: texlive-totcount: Replace deprecated input....* gnu/packages/tex.scm (texlive-totcount)[propagated-inputs]: Replace deprecated texlive-latex-graphics by texlive-graphics. Signed-off-by: Josselin Poiret <dev@jpoiret.xyz> Simon Tournier
2023-05-11gnu: texlive-ncctools: Replace deprecated input....* gnu/packages/tex.scm (texlive-ncctools)[propagated-inputs]: Replace deprecated texlive-latex-graphics by texlive-graphics. Signed-off-by: Josselin Poiret <dev@jpoiret.xyz> Simon Tournier
2023-05-11gnu: texlive-soulutf8: Replace deprecated inputs....* gnu/packages/tex.scm (texlive-soulutf8)[propagated-inputs]: Replace deprecated texlive-generic-etexcmds by texlive-etexcmds and deprecated texlive-generic-infwarerr by texlive-infwarerr. Signed-off-by: Josselin Poiret <dev@jpoiret.xyz> Simon Tournier
2023-05-11gnu: texlive-xetex: Replace deprecated inputs....* gnu/packages/tex.scm (texlive-xetex)[propagated-inputs]: Replace deprecated texlive-generic-atbegshi by texlive-atbegshi and deprecated texlive-latex-atveryend by texlive-atveryend. Signed-off-by: Josselin Poiret <dev@jpoiret.xyz> Simon Tournier
2023-05-11gnu: python-skranger: Install library....* gnu/packages/python-xyz.scm (python-skranger)[arguments]: Install the library that we've just built. Ricardo Wurmus
2023-05-11gnu: Add python-skranger....* gnu/packages/python-xyz.scm (python-skranger): New variable. Ricardo Wurmus
2023-05-11Revert "gnu: Add python-pytest-enabler."...This reverts commit 0a8c46e89f095a9ec3632d43920ac3cce49f16d5. An older version of python-pytest-enabler already exists in (gnu packages check). Ricardo Wurmus
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