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2017-01-17gnu: Add r-pcamethods....* gnu/packages/bioinformatics.scm (r-pcamethods): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-mzid....* gnu/packages/bioinformatics.scm (r-mzid): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-vsn....* gnu/packages/bioinformatics.scm (r-vsn): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-affy....* gnu/packages/bioinformatics.scm (r-affy): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-affyio....* gnu/packages/bioinformatics.scm (r-affyio): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-mzr....* gnu/packages/bioinformatics.scm (r-mzr): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-protgenerics....* gnu/packages/bioinformatics.scm (r-protgenerics): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-maldiquant....* gnu/packages/bioinformatics.scm (r-maldiquant): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-raremetals2....* gnu/packages/bioinformatics.scm (r-raremetals2): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-seqminer....* gnu/packages/bioinformatics.scm (r-seqminer): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-compquadform....* gnu/packages/statistics.scm (r-compquadform): New variable. Ricardo Wurmus
2017-01-17gnu: Add ribodiff....* gnu/packages/bioinformatics.scm (ribodiff): New variable. Ricardo Wurmus
2017-01-17gnu: Add hisat2....* gnu/packages/bioinformatics.scm (hisat2): New variable. Ricardo Wurmus
2017-01-17gnu: Add r-fivethirtyeight....* gnu/packages/statistics.scm (r-fivethirtyeight): New variable. Ricardo Wurmus
2017-01-17gnu: powertabeditor: Update to 2.0.0-alpha9....* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha9. [source]: Simplify snippet. [arguments]: Adjust phases; remove unnecessary configure flag. Ricardo Wurmus
2017-01-17Revert "gnu: cups-filters: Disable mutool integration."...This change would cause 594 packages to be rebuilt, so it was moved to the staging branch. This reverts commit 58a7bbc5fe52f20910fb0fe7fddb9012f2049034. Leo Famulari
2017-01-17gnu: webkitgtk: Update to 2.14.3 [security fixes]....Fixes CVE-2016-{7586,7589,7592,7599,7623,7632,7635,7639,7641,7645,7652,7654,7656}. * gnu/packages/webkit.scm (webkitgtk): Update to 2.14.3. Leo Famulari
2017-01-17gnu: cups-filters: Disable mutool integration....* gnu/packages/cups.scm (cups-filters)[arguments]: Add ‘--disable-mutool’ to #:configure-flags. [inputs]: Remove mupdf. Tobias Geerinckx-Rice
2017-01-17gnu: libpsl: Update to 0.17.0....* gnu/packages/web.scm (libpsl): Update to 0.17.0. Tobias Geerinckx-Rice
2017-01-17gnu: proxychains-ng: Update to 4.12....* gnu/packages/networking.scm (proxychains-ng): Update to 4.12. Tobias Geerinckx-Rice
2017-01-17gnu: password-store: Install bash completions....* gnu/packages/password-utils.scm (password-store)[arguments]: Add 'install-shell-completions' phase. Marius Bakke
2017-01-17gnu: gnucash: Update to 2.6.15....* gnu/packages/gnucash.scm (gnucash): Update to 2.6.15. Ricardo Wurmus
2017-01-17gnu: Add proj.4....* gnu/packages/geo.scm (proj.4): New variable. (gnome-maps): Use license: prefix. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Björn Höfling
2017-01-17gnu: xscreensaver: Update to 5.36....* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.36. Marius Bakke
2017-01-17gnu: perl-image-exiftool: Update to 10.40....* gnu/packages/photo.scm (perl-image-exiftool): Update to 10.40. [synopsis, description]: Mention more capabilities. Leo Famulari
2017-01-17gnu: ghc-quickcheck-instances: Update to 0.3.12....* gnu/packages/haskell.scm (ghc-quickcheck-instances): Update to 0.3.12. [inputs]: Add ghc-scientific and ghc-vector. Ricardo Wurmus
2017-01-16gnu: imagemagick: Update to 6.9.7-4 [security fixes]....* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-4. Leo Famulari
2017-01-16gnu: Add scrypt....* gnu/packages/crypto.scm (scrypt): New variable. Leo Famulari
2017-01-16gnu: Add emacs-stripe-buffer....* gnu/packages/emacs.scm (emacs-stripe-buffer): New variable. Ricardo Wurmus
2017-01-16gnu: Add emacs-git-timemachine....* gnu/packages/emacs.scm (emacs-git-timemachine): New variable. Ricardo Wurmus
2017-01-16gnu: guile-sqlite3: Provide a new source URL....* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Change. Ludovic Courtès
2017-01-16file-systems: 'file-system-needed-for-boot?' is #t for parents of the store....Suggested by John Darrington <john@darrington.wattle.id.au>. * gnu/system/file-systems.scm (%not-slash): New variable. (file-prefix?): New procedure. (file-system-needed-for-boot?): Use it to check whether FS holds the store. * tests/file-systems.scm ("file-system-needed-for-boot?"): New test. * gnu/tests/install.scm (%separate-store-os)[file-systems]: Remove 'needed-for-boot?' field for "/gnu". Ludovic Courtès
2017-01-16gnu: Add r-centipede....* gnu/packages/bioinformatics.scm (r-centipede): New variable. Ricardo Wurmus
2017-01-16gnu: Add ocaml-lwt....* gnu/packages/ocaml.scm (ocaml-lwt): New variable. Julien Lepiller
2017-01-16gnu: Add ocaml-ssl....* gnu/packages/ocaml.scm (ocaml-ssl): New variable. Julien Lepiller
2017-01-16gnu: Add ocaml-react....* gnu/packages/ocaml.scm (ocaml-react): New variable. Julien Lepiller
2017-01-16gnu: Add ocaml-ppx-tools....* gnu/packages/ocaml.scm (ocaml-ppx-tools): New variable. Julien Lepiller
2017-01-16gnu: Add ocaml-alcotest....* gnu/packages/ocaml.scm (ocaml-alcotest): New variable. Julien Lepiller
2017-01-16gnu: Add ocaml-astring....* gnu/packages/ocaml.scm (ocaml-astring): New variable. Julien Lepiller
2017-01-16gnu: Add ocaml-fmt....* gnu/packages/ocaml.scm (ocaml-fmt): New variable. Julien Lepiller
2017-01-16gnu: camlzip: Install both modules....* gnu/packages/ocaml.scm (camlzip) [arguments]: Install both zip and camlzip modules. Julien Lepiller
2017-01-16gnu: Add python-autopep8....* gnu/packages/python.scm (python-autopep8, python2-autopep8): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thomas Danckaert
2017-01-16gnu: kdevelop: Set more paths in wrapper script....* gnu/packages/kde.scm (kdevelop)[arguments]: Add more paths in wrap-executable: add "/share" output of kdevplatform and kcmutils to $XDG_DATA_DIRS; add "lib/plugins" from user profile to $QT_PLUGIN_PATH. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thomas Danckaert
2017-01-16gnu: kdevelop: Update to 5.0.3....* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.0.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thomas Danckaert
2017-01-16grafts: Preserve the cache across recursive calls....Before this commit, we'd lose the cache across recursive calls to 'cumulative-grafts', which isn't great performance-wise. This bug was already present before d38bc9a9f6feefc465964531520fee5663a12f48. * guix/grafts.scm (with-cache): In the miss case, call 'current-state' after EXP has been evaluated. Ludovic Courtès
2017-01-16grafts: Actually cache grafts during the derivation DAG traversal....This fixes a regression introduced in d38bc9a9f6feefc465964531520fee5663a12f48 whereby the cache was effectively disabled. Reported by Thomas Danckaert <thomas.danckaert@gmail.com>. * guix/grafts.scm (with-cache): In the cache miss case, wrap body in 'mbegin'. Ludovic Courtès
2017-01-16gnu: linux-libre: Update to 4.9.4....* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash) (linux-libre): Update to 4.9.4. Mark H Weaver
2017-01-16gnu: linux-libre@4.4: Update to 4.4.43....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.43. Mark H Weaver
2017-01-16gnu: dwm: Add '.desktop' file....Fixes <https://bugs.gnu.org/25438>. * gnu/packages/suckless.scm (dwm)[arguments]: Add 'install-xsession' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ng0
2017-01-16gnu: dwm: Use modify-phases....* gnu/packages/suckless.scm (dwm): Use modify-phases. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ng0