| Age | Commit message (Expand) | Author |
|---|
| 2018-09-07 | gnu: guile-json: Update to 1.2.0....* gnu/packages/guile.scm (guile-json): Update to 1.2.0.
[license]: Change to GPL3+.
| Ludovic Courtès |
| 2018-09-07 | guix describe: Display information about the current generation....* guix/scripts/describe.scm (display-profile-info)[number]: Use the
current generation number instead of the last generation number.
| Ludovic Courtès |
| 2018-09-07 | guix package: Record package provenance in manifest entries....* guix/profiles.scm (package->manifest-entry): Add #:properties and
honor it.
* guix/scripts/package.scm (package-provenance)
(package->manifest-entry*): New procedures.
(transaction-upgrade-entry, options->installable): Use
'package->manifest-entry*' instead of 'package->manifest-entry'.
| Ludovic Courtès |
| 2018-09-07 | Add 'guix describe'....* guix/scripts/describe.scm: New file.
* Makefile.am (MODULES): Add it.
(SH_TESTS): Add tests/guix-describe.sh.
* po/guix/POTFILES.in: Add it.
* guix/scripts/pull.scm (display-profile-content): Export.
* guix/describe.scm (current-profile, current-profile-entries): Export.
* tests/guix-describe.sh: New file.
* doc/guix.texi (Features): Mention 'guix pull' and provenance tracking.
(Invoking guix pull): Link to 'guix describe'.
(Channels): Likewise.
(Invoking guix describe): New node.
| Ludovic Courtès |
| 2018-09-07 | pull: Add '--profile'....* guix/scripts/pull.scm (show-help, %options): Add '--profile'.
(build-and-install): Change 'config-dir' argument to 'profile'.
(guix-pull): Honor '--profile'.
* doc/guix.texi (Invoking guix pull): Document it.
| Ludovic Courtès |
| 2018-09-07 | gnu: Add r-ggformula....* gnu/packages/cran.scm (r-ggformula): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| pimi |
| 2018-09-07 | gnu: Add r-mosaiccore....* gnu/packages/cran.scm (r-mosaiccore): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| pimi |
| 2018-09-07 | gnu: Add r-ggstance....gnu/packages/cran.scm (r-ggstance): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| pimi |
| 2018-09-07 | gnu: Add r-abctools....* gnu/packages/cran.scm (r-abctools): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| pimi |
| 2018-09-07 | gnu: Add r-abcrf....* gnu/packages/cran.scm (r-abcrf): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| pimi |
| 2018-09-07 | gnu: Add r-abcp2....* gnu/packages/cran.scm (r-abcp2): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| pimi |
| 2018-09-07 | gnu: emacs-ess: Update to 17.11....* gnu/packages/emacs.scm (emacs-ess): Update to 17.11
[url]: Use github for https
[snippet]: update julia-mode substitution, only build info doc, bypass failing test
[propagated-inputs]: Add emacs-julia-mode
[description]: Mention that ESS supports Julia and JAGS (which replaces OpenBUGS)
[arguments]: Remove 'set-home' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Alex Branham |
| 2018-09-07 | vm: Make UUID computation really deterministic....Fixes <https://bugs.gnu.org/32652>.
* gnu/system/vm.scm (operating-system-uuid)[service-name,
file-system-digest]: New procedures.
Map these over services and file systems and hash the result.
* tests/guix-system.sh: Add test.
| Ludovic Courtès |
| 2018-09-07 | gnu: knot: Update to 2.7.2....* gnu/packages/dns.scm (knot): Update to 2.7.2.
| Tobias Geerinckx-Rice |
| 2018-09-06 | gnu: Wireshark: Update to 2.6.3 [fixes CVE-2018-{14994,16056,16057,16058}]....* gnu/packages/networking.scm (wireshark): Update to 2.6.3.
| Leo Famulari |
| 2018-09-06 | gnu: curl: Update replacement to 7.61.1 [fixes CVE-2018-14618]....* gnu/packages/curl.scm (curl)[replacement]: Update to 7.61.1.
(curl-7.61.0): Replace variable with ...
(curl-7.61.1): ... new variable.
| Leo Famulari |
| 2018-09-06 | gnu: libgme: Update to 0.6.2....* gnu/packages/music.scm (libgme): Update to 0.6.2.
[native-inputs]: Add gcc-4.9.
| Kei Kebreau |
| 2018-09-06 | doc: Update hpcguix-web configuration documentation....* doc/guix.texi (Web Services): Document 'channels' and
'package-list-expiration'.
| Ludovic Courtès |
| 2018-09-06 | services: hpcguix-web: Set SSL_CERT_DIR....Previously Git pulls over HTTPS would fail with:
guix/git.scm:132:7: In procedure update-cached-checkout:
Throw to key `git-error' with args `(#<<git-error> code: -17 message: "the SSL certificate is invalid" class: 16>)'.
* gnu/services/web.scm (hpcguix-web-shepherd-service): Pass
"SSL_CERT_DIR=/etc/ssl/certs".
* doc/guix.texi (Web Services): Mention certificates.
| Ludovic Courtès |
| 2018-09-06 | build-self: Accomodate upgrades from May 2016 and earlier....Reported by Paul Garlick <pgarlick@tourbillion-technology.com>.
Fixes a bug whereby "old" Guix instances (before mid-May 2018) would
fail to pull to current master.
Specifically, Paul reported being unable to upgrade from
6f84dc4314cd84550d9fc7e7afa11c495edc45a5 (a commit that predates that
addition of the 'bootstrap' phase on gnu-build-system on 'master' and
that also predates the new 'guix pull'.)
* build-aux/build-self.scm (guile-gcrypt)[arguments]: New field.
| Ludovic Courtès |
| 2018-09-06 | gnu: gfortran, gcc-objc, gcc-objc++: Add version 8....* gnu/packages/gcc.scm (gfortran-8, gcc-objc-8, gcc-objc++-8): New
variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Eric Brown |
| 2018-09-06 | build: Remove -L flag when $LIBGCRYPT_LIBDIR is empty....Reported by Alex Vong <alexvong1995@gmail.com>.
* config-daemon.ac: Do not add "-L$LIBGCRYPT_LIBDIR" to LIBGCRYPT_LIBS
when "$LIBGCRYPT_LIBDIR" is empty.
| Ludovic Courtès |
| 2018-09-06 | gnu: guile-present: Install .go files to libdir....* gnu/packages/plotutils.scm (guile-present)[source](modules, snippet):
Remove.
| Ludovic Courtès |
| 2018-09-06 | gnu: guile-charting: Install .go files to libdir....* gnu/packages/plotutils.scm (guile-charting)[source](modules, snippet):
Remove.
| Ludovic Courtès |
| 2018-09-06 | gnu: hpcguix-web: Update to 9ff40fc....* gnu/packages/web.scm (hpcguix-web): Update to 9ff40fc.
[arguments]: In 'wrap-program' phase, add guile-gcrypt, guile-git, and
guile-bytestructures to DEPS.
| Ludovic Courtès |
| 2018-09-06 | gnu: guile-commonmark: Install .go files to libdir....* gnu/packages/guile.scm (guile-commonmark)[source](snippet): Change the
"modir = " and "godir = " line separately, allowing .go files to be
installed to $(libdir).
| Ludovic Courtès |
| 2018-09-06 | Add missing use-modules clause....This is a follow-up to commit 5dfe491290b14a1ee7efd70f9cd083969c24e1c2.
Sorry!
* gnu/packages/bioinformatics.scm, gnu/packages/graph.scm: Use (gnu packages
bioconductor).
| Ricardo Wurmus |
| 2018-09-06 | gnu: ccache: Update to 3.4.3....* gnu/packages/ccache.scm (ccache): Update to 3.4.3.
[arguments]: Remove obsolete 'munge-failing-test' phase.
| Tobias Geerinckx-Rice |
| 2018-09-06 | gnu: font-fira-code: Update to 1.205....* gnu/packages/fonts.scm (font-fira-code): Update to 1.205.
| Tobias Geerinckx-Rice |
| 2018-09-06 | gnu: libmpdclient: Update to 2.15....* gnu/packages/mpd.scm (libmpdclient): Update to 2.15.
| Tobias Geerinckx-Rice |
| 2018-09-05 | git: Don't require users to specifiy "origin/" for branches....Fixes <https://bugs.gnu.org/32618>.
Reported by Eric Brown <brown@fastmail.com>.
* guix/git.scm (update-cached-checkout): Remove "origin/" from default
REF. Define CANONICAL-REF and use it instead of REF.
(latest-repository-commit): Remove "origin/" from default REF.
* guix/channels.scm (%default-channels): Remove "origin/" from
'branch'.
| Ludovic Courtès |
| 2018-09-05 | channels: Fix external channel builds....This fixes a regression introduced in
ca719424455465fca4b872c371daf2a46de88b33 whereby external channels would
fail to build due to the lack of (gcrypt …) modules.
* guix/channels.scm (channel-instance-derivations): Add 'guile-gcrypt'.
Pass it along CORE to 'build-channel-instance'.
| Ludovic Courtès |
| 2018-09-05 | gnu: pigx-scrnaseq: Use latest version of Pandoc....* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
| Ricardo Wurmus |
| 2018-09-05 | gnu: pigx-bsseq: Use latest version of Pandoc....* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
| Ricardo Wurmus |
| 2018-09-05 | gnu: pigx-chipseq: Use latest version of Pandoc....* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
| Ricardo Wurmus |
| 2018-09-05 | gnu: pigx-rnaseq: Use latest version of Pandoc....* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and
"ghc-pandoc-1" with "ghc-pandoc".
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-rcas: Use standard version of ghc-pandoc-citeproc....* gnu/packages/bioinformatics.scm (r-rcas)[native-inputs]: Replace
"ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc".
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-modelmetrics: Update to 1.2.0....* gnu/packages/statistics.scm (r-modelmetrics): Update to 1.2.0.
[propagated-inputs]: Add r-data-table.
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-robustbase: Update to 0.93-2....* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-2.
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-rann: Update to 2.6....* gnu/packages/statistics.scm (r-rann): Update to 2.6.
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-ggthemes: Update to 4.0.1....* gnu/packages/statistics.scm (r-ggthemes): Update to 4.0.1.
[propagated-inputs]: Remove r-assertthat and r-colorspace; add r-purrr,
r-stringr, and r-tibble.
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-ztable: Update to 0.2.0....* gnu/packages/statistics.scm (r-ztable): Update to 0.2.0.
[propagated-inputs]: Add r-flextable, r-magrittr, r-moonbook, r-officer,
r-rcolorbrewer, r-scales, and r-stringr.
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-zoo: Update to 1.8-3....* gnu/packages/statistics.scm (r-zoo): Update to 1.8-3.
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-gtools: Update to 3.8.1....* gnu/packages/statistics.scm (r-gtools): Update to 3.8.1.
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-kernlab: Update to 0.9-27....* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-27.
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-adaptivesparsity: Update to 1.6....* gnu/packages/machine-learning.scm (r-adaptivesparsity): Update to 1.6.
[propagated-inputs]: Add r-mass and r-matrix.
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-codedepends: Move from cran to bioconductor....* gnu/packages/cran.scm (r-codedepends): Move from here...
* gnu/packages/bioconductor.scm (r-codedepends): ...to here.
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-graph: Move from bioinformatics to bioconductor....* gnu/packages/bioinformatics.scm (r-graph): Move from here...
* gnu/packages/bioconductor.scm (r-graph): ...to here.
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-ggpubr: Update to 0.1.8....* gnu/packages/cran.scm (r-ggpubr): Update to 0.1.8.
[propagated-inputs]: Add r-glue and r-polynom.
| Ricardo Wurmus |
| 2018-09-05 | gnu: r-codedepends: Update to 0.6.5....* gnu/packages/cran.scm (r-codedepends): Update to 0.6.5.
[propagated-inputs]: Add r-graph.
| Ricardo Wurmus |
