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2021-04-08build-system/qt: Wrappers only include relevant directories to XDG_DATA_DIRS....Fixes <https://bugs.gnu.org/47569>. Previously the wrapper's XDG_DATA_DIRS would contain any input that had a /share sub-directory, which is usually all build-time inputs. * guix/build/qt-build-system.scm (variables-for-wrapping)[collect-sub-dirs]: Add 'selectors' parameter and honor it. Change caller to handle selectors. Add selectors for /share. Ludovic Courtès
2021-04-08gnu-maintenance: 'sourceforge' updater reuses the same connection....* guix/gnu-maintenance.scm (latest-sourceforge-release): Call 'open-socket-for-uri' upfront. Pass #:port and #:keep-alive? to 'http-head'. Wrap body in 'dynamic-wind' and call 'close-port' upon exit. Ludovic Courtès
2021-04-08gnu: emacs-emms: Update to 7.0....* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 7.0. Nicolas Goaziou
2021-04-08gnu: guix-build-coordinator: Update to 0-22.44d0006....* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-22.44d0006. Christopher Baines
2021-04-08gnu: linux-libre 4.4: Update to 4.4.265....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.265. (linux-libre-4.4-pristine-source): Update hash. Leo Famulari
2021-04-08gnu: linux-libre 4.9: Update to 4.9.265....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.265. (linux-libre-4.9-pristine-source): Update hash. Leo Famulari
2021-04-08gnu: linux-libre 4.14: Update to 4.14.229....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.229. (linux-libre-4.14-pristine-source): Update hash. Leo Famulari
2021-04-08gnu: linux-libre 4.19: Update to 4.19.185....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.185. (linux-libre-4.19-pristine-source): Update hash. Leo Famulari
2021-04-08gnu: linux-libre 5.4: Update to 5.4.110....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.110. (linux-libre-5.4-pristine-source): Update hash. Leo Famulari
2021-04-08gnu: linux-libre 5.10: Update to 5.10.28....* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.28. (linux-libre-5.10-pristine-source): Update hash. Leo Famulari
2021-04-08gnu: linux-libre: Update to 5.11.12....* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.12. (linux-libre-5.11-pristine-source): Update hash. Leo Famulari
2021-04-08system: vm: Set a larger value for the msize option of the 9p file system....Fixes <https://issues.guix.gnu.org/47225>. * gnu/system/vm.scm (%default-msize-value): New variable. (%linux-vm-file-systems): Use it as the value of the msize option. (mapping->file-system): Likewise. Reported-by: Leo Famulari <leo@famulari.name> Maxim Cournoyer
2021-04-08etc/committer: Disable diff colors....Reported by: morgansmith on IRC. * etc/committer.scm.in (diff-info): Invoke "git diff" with "--no-color". Ricardo Wurmus
2021-04-08ci: Introduce new subsets....Introduce 'images, 'system-tests and 'tarball subsets. * gnu/ci.scm (cuirass-jobs): Break the 'all subset into smaller subsets. Mathieu Othacehe
2021-04-08ci: Remove the job period argument....Cuirass now deals with periodicity directly on specifications. * gnu/ci.scm (derivation->job): Remove the period argument. (image-jobs, system-test-jobs, tarball-jobs): Adapt them. Mathieu Othacehe
2021-04-08gnu: r-genomicfeatures: Update to 1.42.3....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.3. Ricardo Wurmus
2021-04-08gnu: r-gviz: Update to 1.34.1....* gnu/packages/bioconductor.scm (r-gviz): Update to 1.34.1. Ricardo Wurmus
2021-04-08gnu: r-universalmotif: Update to 1.8.4....* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.4. Ricardo Wurmus
2021-04-08gnu: r-rsubread: Update to 2.4.3....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.4.3. Ricardo Wurmus
2021-04-08gnu: r-chippeakanno: Update to 3.24.2....* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.24.2. [propagated-inputs]: Add r-dplyr. Ricardo Wurmus
2021-04-08gnu: r-diffbind: Update to 3.0.15....* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.15. Ricardo Wurmus
2021-04-08gnu: r-genomeinfodb: Update to 1.26.6....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.6. Ricardo Wurmus
2021-04-08gnu: r-delayedarray: Update to 0.16.3....* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.16.3. Ricardo Wurmus
2021-04-08gnu: Add texlive-mweights....* gnu/packages/tex.scm: New variable. Paul Garlick
2021-04-08gnu: axoloti-runtime: Simplify build....* gnu/packages/axoloti.scm (axoloti-runtime)[arguments]: Remove unnecessary environment variable assignments in custom 'build phase. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Morgan Smith
2021-04-08gnu: gcc-arm-none-eabi: Fix C++ header location....Previously the C++ headers where installed in the include folder, overwriting some C headers. * gnu/packages/embedded.scm (gcc-arm-none-eabi-4.9) [native-search-paths]: Add C++ header locations. (gcc-arm-none-eabi-7-2018-q2-update)[native-search-paths]: Add C++ header locations. (make-libstdc++-arm-none-eabi)[arguments]: Change C++ header install location to include/c++. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Morgan Smith
2021-04-08etc/committer: Recompute hunks before processing changes....* etc/committer.scm.in (main): Re-evaluate diff-info after processing insertions. Ricardo Wurmus
2021-04-08etc/committer: Record minimal context for hunks to avoid problems....With zero context new definitions would be applied to the wrong location in the file. More context lines lead to larger hunks, though, so we use just one line of context. * etc/committer.scm.in (diff-info): Invoke "git diff" with one line of context. [info]: Merge line break and first line. (lines-to-first-change): New procedure. (old-sexp, new-sexp): Use it. Ricardo Wurmus
2021-04-08etc/committer: Define delay duration as a variable....* etc/committer.scm.in (%delay): New variable. (main): Use it. Ricardo Wurmus
2021-04-08etc/committer: Handle package additions....* etc/committer.scm.in (<hunk>)[diff]: Rename this field... [diff-lines]: ...to this. [definition?]: New field. (hunk->patch): Join diff lines. (diff-info): Do not join diff lines; record whether a hunk is a new definition. (commit-message): Rename this procedure... (change-commit-message): ...to this. (add-commit-message): New procedure. (main): Handle new package definitions before changes. Ricardo Wurmus
2021-04-08gnu: r-sn: Update to 2.0.0....* gnu/packages/statistics.scm (r-sn): Update to 2.0.0. Ricardo Wurmus
2021-04-08gnu: r-sfsmisc: Update to 1.1-10....* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-10. Ricardo Wurmus
2021-04-08gnu: r-e1071: Update to 1.7-6....* gnu/packages/statistics.scm (r-e1071): Update to 1.7-6. [propagated-inputs]: Add r-proxy. Ricardo Wurmus
2021-04-08gnu: r-xml: Update to 3.99-0.6....* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.6. Ricardo Wurmus
2021-04-08gnu: r-rsqlite: Update to 2.2.5....* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.5. Ricardo Wurmus
2021-04-08gnu: r-catools: Update to 1.18.2....* gnu/packages/statistics.scm (r-catools): Update to 1.18.2. Ricardo Wurmus
2021-04-08gnu: r-dbplyr: Update to 2.1.1....* gnu/packages/statistics.scm (r-dbplyr): Update to 2.1.1. Ricardo Wurmus
2021-04-08gnu: r-survival: Update to 3.2-10....* gnu/packages/statistics.scm (r-survival): Update to 3.2-10. Ricardo Wurmus
2021-04-08gnu: r-stars: Update to 0.5-2....* gnu/packages/cran.scm (r-stars): Update to 0.5-2. Ricardo Wurmus
2021-04-08gnu: r-lwgeom: Update to 0.2-6....* gnu/packages/cran.scm (r-lwgeom): Update to 0.2-6. [inputs]: Add zlib. Ricardo Wurmus
2021-04-08gnu: r-ragg: Update to 1.1.2....* gnu/packages/cran.scm (r-ragg): Update to 1.1.2. Ricardo Wurmus
2021-04-08gnu: r-textshaping: Update to 0.3.3....* gnu/packages/cran.scm (r-textshaping): Update to 0.3.3. Ricardo Wurmus
2021-04-08gnu: r-bbotk: Update to 0.3.2....* gnu/packages/cran.scm (r-bbotk): Update to 0.3.2. Ricardo Wurmus
2021-04-08gnu: r-mlr3learners: Update to 0.4.5....* gnu/packages/cran.scm (r-mlr3learners): Update to 0.4.5. Ricardo Wurmus
2021-04-08gnu: r-mlr3misc: Update to 0.8.0....* gnu/packages/cran.scm (r-mlr3misc): Update to 0.8.0. Ricardo Wurmus
2021-04-08gnu: r-phangorn: Update to 2.6.3....* gnu/packages/cran.scm (r-phangorn): Update to 2.6.3. [native-inputs]: Add r-knitr. Ricardo Wurmus
2021-04-08gnu: r-qtl: Update to 1.48-1....* gnu/packages/cran.scm (r-qtl): Update to 1.48-1. Ricardo Wurmus
2021-04-08gnu: r-altmeta: Update to 3.3....* gnu/packages/cran.scm (r-altmeta): Update to 3.3. Ricardo Wurmus
2021-04-08gnu: r-tidyposterior: Update to 0.1.0....* gnu/packages/cran.scm (r-tidyposterior): Update to 0.1.0. [propagated-inputs]: Remove r-lifecycle; add r-tune and r-workflowsets. Ricardo Wurmus
2021-04-08gnu: r-slider: Update to 0.2.1....* gnu/packages/cran.scm (r-slider): Update to 0.2.1. [propagated-inputs]: Add r-ellipsis. Ricardo Wurmus
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