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2018-03-19gnu: pigx-rnaseq: Use pandoc-1....* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: Add ghc-pandoc-citeproc-with-pandoc-1....* gnu/packages/haskell.scm (ghc-pandoc-citeproc-with-pandoc-1): New variable. Ricardo Wurmus
2018-03-18git-download: Fix recursive checkouts....* guix/git-download.scm (git-fetch)<build>: Fix match on INPUTS, which may contain package outputs. Eric Bavier
2018-03-19gnu: Add r-abbyyr....* gnu/packages/cran.scm (r-abbyyr): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Vijayalakshmi Vedantham
2018-03-18glob: Add an extra glob pattern compilation stage....* guix/glob.scm (compile-glob-pattern): Rename to... (string->sglob): ... this. (compile-sglob, string->compiled-sglob): New procedures. (glob-match?): Replace '?, 'range, and 'set with a single clause. * tests/glob.scm (test-compile-glob-pattern): Rename to... (test-string->sglob): ... this. Adjust accordingly. (test-glob-match): Use 'string->compiled-sglob' instead of 'compile-glob-pattern'. * gnu/build/linux-modules.scm (read-module-aliases): Use 'string->compiled-sglob' instead of 'compile-glob-pattern'. Ludovic Courtès
2018-03-18glob: Support square brackets in patterns....* guix/glob.scm (wildcard-indices): Remove. (parse-bracket): New procedure. (compile-glob-pattern): Rewrite. Support square brackets for sets and ranges. (glob-match?): Support sets and ranges. * tests/glob.scm (test-compile-glob-pattern) (test-glob-match): New macros. Use them to rewrite the existing tests, and add new tests. Ludovic Courtès
2018-03-18linux-modules: 'load-linux-module*' honors BLACK-LIST in recursive calls....* gnu/build/linux-modules.scm (load-linux-module*): Pass BLACK-LIST in recursive call. Ludovic Courtès
2018-03-18linux-modules: Add 'current-kernel-directory'....* gnu/build/linux-modules.scm (current-kernel-directory): New procedure. (current-alias-file): Use it. Ludovic Courtès
2018-03-18vm: Display a backtrace upon error by default....* gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass #:on-error to 'base-initrd'. Ludovic Courtès
2018-03-18tests: elpa: Don't actually download files....* tests/elpa.scm (eval-test-with-elpa): Mock 'url-fetch'. Ludovic Courtès
2018-03-18import: elpa: Return 'license:gpl3+ for ELPA only....Fixes <https://bugs.gnu.org/30836>. Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>. * guix/import/elpa.scm (elpa-package->sexp): Add LICENSE parameter and honor it. (elpa->guix-package): Pass 'license:gpl3+ only when REPO is 'gnu. Ludovic Courtès
2018-03-18import: elpa: Adjust test for HTTPS URLs....This is a followup to 44dd3d579db3aa467e41d0b431029e46cae8e12d. * tests/elpa.scm (eval-test-with-elpa): Use https. Ludovic Courtès
2018-03-18gnu: youtube-dl: Update to 2018.03.14....* gnu/packages/video.scm (youtube-dl): Update to 2018.03.14. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Sohom Bhattacharjee
2018-03-18gnu: shotwell: Update to 0.28.0....* gnu/packages/gnome.scm (shotwell): Update to 0.28.0. Christopher Baines
2018-03-18gnu: Add ruby-ruby-engine....* gnu/packages/ruby.scm (ruby-ruby-engine): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-rake....* gnu/packages/ruby.scm (ruby-rake): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-erubis....* gnu/packages/ruby.scm (ruby-erubis): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-sporkmonger-rack-mount....* gnu/packages/ruby.scm (ruby-sporkmonger-rack-mount): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-creole....* gnu/packages/ruby.scm (ruby-creole): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-contest....* gnu/packages/ruby.scm (ruby-contest): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-rack-protection....* gnu/packages/ruby.scm (ruby-rack-protection): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-rack-test....* gnu/packages/ruby.scm (ruby-rack-test): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-asciidoctor....* gnu/packages/ruby.scm (ruby-asciidoctor): New variable. Ben Woodcroft
2018-03-18gnu: Add ruby-asciimath....* gnu/packages/maths.scm (ruby-asciimath): New variable. Ben Woodcroft
2018-03-17gnu: icecat: Fix CVE-2018-{5146,5147}, etc....Includes fixes for CVE-2018-5146 and CVE-2018-5147. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr52 repository. Mark H Weaver
2018-03-17gnu: Add terraform-docs....* gnu/packages/terraform.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Christopher Baines
2018-03-17gnu: Add go-github-com-hashicorp-hcl....* gnu/packages/golang.scm (go-github-com-hashicorp-hcl): New variable. Christopher Baines
2018-03-17gnu: Add go-github-com-tj-docopt....* gnu/packages/golang.scm (go-github-com-tj-docopt): New variable. Christopher Baines
2018-03-18git: 'switch-to-ref' accepts short commit IDs....Fixes <https://bugs.gnu.org/30716>. Reported by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>. * guix/git.scm (switch-to-ref): When REF is a commit, check the length of COMMIT and use 'object-lookup-prefix' if available. Ludovic Courtès
2018-03-18gnu: guile-git: Update to 2bb9fbb....* gnu/packages/guile.scm (guile-git): Update to 2bb9fbb. Ludovic Courtès
2018-03-18gnu: nss-mdns: Adjust Avahi socket file name....Fixes <https://bugs.gnu.org/30613>. Regression introduced in 550f4509acf2c0f67882260414b0bb2843e07465. Reported by George myglc2 Clemmer <myglc2@gmail.com>. * gnu/packages/avahi.scm (nss-mdns)[arguments]: Remove #:configure-flags. Add #:phases. Ludovic Courtès
2018-03-18gnu: datamash: Update to 1.3....* gnu/packages/datamash.scm (datamash): Update to 1.3. Ludovic Courtès
2018-03-18gnu: fvwm: Add '.desktop' file....* gnu/packages/fvwm.scm (fvwm)[arguments]: Add new phase to create '.desktop' file. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ng0
2018-03-18import: elpa: Fix typos in documentation strings...* guix/import/elpa.scm: Fix typos in docstrings. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Konrad Hinsen
2018-03-18import: elpa: use https in download URLs...* guix/import/elpa.scm (elpa-url): Use HTTPS. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Konrad Hinsen
2018-03-18services: openssh: Add 'accepted-environment' field....* gnu/services/ssh.scm (<openssh-configuration>)[accepted-environment]: New field. (openssh-config-file): Honor 'acccepted-environment'. * doc/guix.texi (Networking Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Martin Castillo
2018-03-18gnu: java-simple-xml: Fix java8 test failures....* gnu/packages/patches/javas-simple-xml-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/java.scm (java-simple-xml)[source](patches): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Gábor Boskovits
2018-03-17gnu: shaderc: Clean up package arguments....* gnu/packages/vulkan.scm (shaderc)[version]: Remove extra '-'. [arguments]: Remove extra 'mkdir-p' calls and refer to inputs directly. Efraim Flashner
2018-03-17Revert "gnu: shaderc: Use more standard keys."...This reverts commit 9bc0591bc11190ac49c8ea3cf44c4903c924f6c7. This commit broke 'shaderc'. Rutger Helling
2018-03-17gnu: Add python-prometheus-client....* gnu/packages/monitoring.scm (python-prometheus-client, python2-prometheus-client): New variables. Christopher Baines
2018-03-17services: databases: Change quote' to single-quote....In the postgresql-config-file gexp compiler. * gnu/services/databases.scm (postgresql-config-file-compiler): Change quote' to single-quote. Christopher Baines
2018-03-17gnu: Use the CMake build system's #:build-type key....* gnu/packages/code.scm (rtags)[arguments]: Move the CMAKE_BUILD_TYPE from #:configure-flags to #:build-type. * gnu/packages/databases.scm (apache-arrow)[arguments]: Likewise * gnu/packages/engineering.scm (kicad)[arguments]: Likewise * gnu/packages/flashing-tools.scm (heimdall)[arguments]: Likewise * gnu/packages/graphics.scm (openscenegraph)[arguments]: Likewise * gnu/packages/linux.scm (rdma-core)[arguments]: Likewise * gnu/packages/music.scm (portmidi)[arguments]: Likewise * gnu/packages/photo.scm (rawtherapee)[arguments]: Likewise * gnu/packages/rdesktop.scm (freerdp)[arguments]: Likewise * gnu/packages/serialization.scm (flatbuffers)[arguments]: Likewise * gnu/packages/web.scm (tidy-html)[arguments]: Likewise Tobias Geerinckx-Rice
2018-03-17gnu: Fix common unquote typos....It's easy to mistype ‘("foo" foo)’ as ‘("foo", foo)’ (which also works). Fix such typos for the proper edification of our young. * gnu/packages/android.scm: Move unquotes to their operands. * gnu/packages/bootloaders.scm: Likewise. * gnu/packages/build-tools.scm: Likewise. * gnu/packages/chemistry.scm: Likewise. * gnu/packages/compression.scm: Likewise. * gnu/packages/connman.scm: Likewise. * gnu/packages/django.scm: Likewise. * gnu/packages/emulators.scm: Likewise. * gnu/packages/engineering.scm: Likewise. * gnu/packages/file-systems.scm: Likewise. * gnu/packages/freedesktop.scm: Likewise. * gnu/packages/games.scm: Likewise. * gnu/packages/gimp.scm: Likewise. * gnu/packages/gl.scm: Likewise. * gnu/packages/gnome.scm: Likewise. * gnu/packages/graphics.scm: Likewise. * gnu/packages/haskell.scm: Likewise. * gnu/packages/irc.scm: Likewise. * gnu/packages/julia.scm: Likewise. * gnu/packages/kde-frameworks.scm: Likewise. * gnu/packages/linux.scm: Likewise. * gnu/packages/lua.scm: Likewise. * gnu/packages/mail.scm: Likewise. * gnu/packages/make-bootstrap.scm: Likewise. * gnu/packages/messaging.scm: Likewise. * gnu/packages/music.scm: Likewise. * gnu/packages/networking.scm: Likewise. * gnu/packages/ocaml.scm: Likewise. * gnu/packages/perl.scm: Likewise. * gnu/packages/python.scm: Likewise. * gnu/packages/python-web.scm: Likewise. * gnu/packages/qt.scm: Likewise. * gnu/packages/ratpoison.scm: Likewise. * gnu/packages/sdl.scm: Likewise. * gnu/packages/sml.scm: Likewise. * gnu/packages/terminals.scm: Likewise. * gnu/packages/text-editors.scm: Likewise. * gnu/packages/video.scm: Likewise. * gnu/packages/virtualization.scm: Likewise. * gnu/packages/vulkan.scm: Likewise. * gnu/packages/wget.scm: Likewise. * gnu/packages/wine.scm: Likewise. * gnu/packages/wm.scm: Likewise. * gnu/packages/xdisorg.scm: Likewise. * gnu/packages/xml.scm: Likewise. * gnu/packages/xorg.scm: Likewise. Tobias Geerinckx-Rice
2018-03-17gnu: shaderc: Use more standard keys....* gnu/packages/vulkan.scm (shaderc)[arguments]: Move cmake options from the raw INVOKE call to #:build-type and #:configure-flags. Adjust the ‘configure’ phase accordingly. Tobias Geerinckx-Rice
2018-03-17gnu: shaderc: Use standard versioning scheme....* gnu/packages/vulkan.scm (shaderc)[version]: Use GIT-VERSION with a ‘0.0.0’ prefix. Tobias Geerinckx-Rice
2018-03-17gnu: shaderc: Fix formatting....* gnu/packages/vulkan.scm (shaderc): Use conventional indentation. [native-inputs]: Move unquotes to their operands. Tobias Geerinckx-Rice
2018-03-17gnu: texlive-latex-type1cm: Fix description typo....* gnu/packages/tex.scm (texlive-latex-type1cm)[description]: Fix typo. Tobias Geerinckx-Rice
2018-03-17gnu: python-pkginfo: Update to 1.4.2....* gnu/packages/python.scm (python-pkginfo): Update to 1.4.2. Tobias Geerinckx-Rice
2018-03-17gnu: python-nbformat: Update to 4.4.0....* gnu/packages/python.scm (python-nbformat): Update to 4.4.0. Tobias Geerinckx-Rice
2018-03-17gnu: python-simplejson: Update to 3.13.2....* gnu/packages/python.scm (python-simplejson): Update to 3.13.2. Tobias Geerinckx-Rice
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