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2019-07-24gnu: Add r-mixomics....* gnu/packages/bioconductor.scm (r-mixomics): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-07-24gnu: Add r-flowsom....* gnu/packages/bioconductor.scm (r-flowsom): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-07-24gnu: Add r-flowmeans....* gnu/packages/bioconductor.scm (r-flowmeans): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-07-24gnu: Add r-consensusclusterplus....* gnu/packages/bioconductor.scm (r-consensusclusterplus): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-07-24gnu: Add r-flowutils....* gnu/packages/bioconductor.scm (r-flowutils): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-07-24gnu: Add r-flowcore....* gnu/packages/bioconductor.scm (r-flowcore): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-07-24gnu: Add r-all....* gnu/packages/bioconductor.scm (r-all): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-07-24gnu: Add r-kableextra....* gnu/packages/cran.scm (r-kableextra): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-07-24gnu: Add r-umap....* gnu/packages/cran.scm (r-umap): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2019-07-24gnu: emacs-gitpatch: Update to 0.5.1....* gnu/packages/emacs-xyz.scm (emacs-gitpatch): Update to 0.5.1. Jelle Licht
2019-07-24gnu: terminator: Propagate gsettings-desktop-schemas....* gnu/packages/gnome.scm (terminator)[propagated-inputs]: Add gsettings-desktop-schemas. Tobias Geerinckx-Rice
2019-07-24gnu: spice-gtk: Update to 0.37....* gnu/packages/spice.scm (spice-gtk): Update to 0.37. [propagated-inputs]: Use latest spice-protocol. (spice-protocol-0.12): Remove unused variable. Tobias Geerinckx-Rice
2019-07-24gnu: libvirt-glib: Propagate pkg-config requirements....* gnu/packages/virtualization.scm (libvirt-glib)[inputs]: Move glib, libvirt, libxml2, and gobject-introspection… [native-inputs]: …here. Tobias Geerinckx-Rice
2019-07-24gnu: libvirt-glib: Update to 2.0.0....* gnu/packages/virtualization.scm (libvirt-glib): Update to 2.0.0. [arguments]: Remove ‘fix-tests’ phase. Tobias Geerinckx-Rice
2019-07-24doc: Warn about GPG warning....* doc/guix.texi (Binary Installation, USB Stick and DVD Installation): Warn users about the web-of-trust untrusted key warning from GPG. Leo Famulari
2019-07-24deploy: Handle the '--system' command line option....* guix/scripts/deploy.scm (show-help): Add help for '--system'. (%options): Add '-s' and '--system'. (guix-deploy): Parameterize %current-system. 宋文武
2019-07-24deploy: Honor '--no-grafts'....* guix/scripts/deploy.scm (guix-deploy): Parameterize '%graft?'. 宋文武
2019-07-24gnu: julia: Update to 1.1.1....* gnu/packages/julia.scm (libuv-julia): Update to commit 26dbe56. (libunwind-for-julia): Remove. (llvm-patch-url, llvm-patch): New procedures. (llvm-julia): New variable. (julia): Update to 1.1.1. [arguments]: Adjust 'prepare-deps' to new set of dependencies. Adjust 'hardcode-soname-map': remove openlibm and libfftw handling. Update file names in 'fix-include-and-link-paths' and 'hardcode-paths'. Adjust 'disable-broken-tests'. Pass PREFIX, LIBFLAS, and LIBBLASNAME in #:make-flags; update other flags. [inputs]: Replace LLVM-3.9.1 with LLVM-JULIA. Replace LIBUNWIND-FOR-JULIA with LIBUNWIND. Add "rmath" and "libwhich". [native-inputs]: Remove "unicode-data". Co-authored-by: Ludovic Courtès <ludo@gnu.org> Nicolò Balzarotti
2019-07-24gnu: llvm: Add 'system->llvm-target' procedure....* gnu/packages/llvm.scm (system->llvm-target): New procedure. Ludovic Courtès
2019-07-23doc: Add example for generating a secret key with knot DNS....* doc/guix.texi (DNS Services): Add an example and more context to the includes field of the knot-configuration record. Julien Lepiller
2019-07-23gnu: terminology: Update to 1.5.0....* gnu/packages/enlightenment.scm (terminology): Update to 1.5.0. Efraim Flashner
2019-07-23gnu: emacs-request: Update to 0.3.1....* gnu/packages/emacs-xyz.scm (emacs-request): Update to 0.3.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Mathieu Lirzin
2019-07-23gnu: emacs-google-translate: Update to 0.11.18....* gnu/packages/emacs-xyz.scm (emacs-google-translate): Update to 0.11.18. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Mathieu Lirzin
2019-07-23Makefile: Sort scheme tests alphabetically....* Makefile.am (SCM_TESTS): Sort. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Robert Vollmert
2019-07-23gnu: mallard-ducktype: Update to 1.0.2....* gnu/packages/python-xyz.scm (mallard-ducktype) Update to 1.0.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Jack Hill
2019-07-22gnu: harmonist: Update to 0.2....* gnu/packages/games.scm (harmonist): Update to 0.2. Julien Lepiller
2019-07-22gnu: vlc: Build against libvpx@1.8....* gnu/packages/video.scm (vlc)[inputs]: Change LIBVPX-1.7 to LIBVPX. Marius Bakke
2019-07-22gnu: libvpx: Update to 1.8.1....* gnu/packages/video.scm (libvpx): Update to 1.8.1. Marius Bakke
2019-07-22gnu: zstd: Update to 1.4.1....* gnu/packages/compression.scm (zstd): Update to 1.4.1. Marius Bakke
2019-07-22gnu: zstd: Move libraries to separate outputs....* gnu/packages/compression.scm (zstd)[outputs]: New field. [arguments]: Add phase 'adjust-libary-locations'. Pass LIBDIR and INCLUDEDIR in <#:make-flags>. * gnu/packages/backup.scm (borg)[inputs]: Change ZSTD to ZSTD:LIB. * gnu/packages/sync.scm (casync)[inputs]: Likewise. * gnu/packages/tor.scm (tor)[inputs]: Likewise. * gnu/packages/linux.scm (btrfs-progs)[inputs]: Likewise. Add ZSTD:STATIC. Marius Bakke
2019-07-22gnu: whois: Update to 5.5.0....* gnu/packages/networking.scm (whois): Update to 5.5.0. Marius Bakke
2019-07-22gnu: jsoncpp: Update to 1.9.1....* gnu/packages/serialization.scm (jsoncpp): Update to 1.9.1. Marius Bakke
2019-07-22gnu: ffmpeg: Update to 4.1.4....* gnu/packages/video.scm (ffmpeg): Update to 4.1.4. Marius Bakke
2019-07-22gnu: x265: Update to 3.1.1....* gnu/packages/video.scm (x265): Update to 3.1.1. Marius Bakke
2019-07-22gnu: ungoogled-chromium: Enable parallel build.......but limit the memory usage. Tested with --cores=8 on a 16 GiB RAM machine. * gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Remove <#:parallel-build?>. Add "jumbo_file_merge_limit=8" in <#:configure-flags>. Marius Bakke
2019-07-22gnu: htslib: Propagate zlib....Reported by Vedran Franke <Vedran.Franke@mdc-berlin.de>. * gnu/packages/bioinformatics.scm (htslib)[inputs]: Move zlib from here... [propagated-inputs]: ...to here. Ricardo Wurmus
2019-07-22pack: Pass a list as the entry point for 'build-docker-image'....* guix/scripts/pack.scm (docker-image)[build]: Pass a list as #:entry-point, not a string. Ludovic Courtès
2019-07-22swh: Add basic tests....* guix/swh.scm (%swh-base-url): Turn into a parameter and export it. * tests/swh.scm: New file. * Makefile.am (SCM_TESTS): Add it. Ludovic Courtès
2019-07-22doc: Update 'guix import json' example....This is a followup to d78010b81ee6ef4fd8803082e2f401b9e55b44db. * doc/guix.texi (Invoking guix import): Change 'guix import json' example to refer to "gettext", not "gcc". Ludovic Courtès
2019-07-22gnu: perl-net-http: Update to 6.19....* gnu/packages/web.scm (perl-net-httpd): Update to 6.19. Efraim Flashner
2019-07-22gnu: perl-test-simple: Update to 1.302164....* gnu/packages/perl-check.scm (perl-test-simple): Update to 1.302164. Efraim Flashner
2019-07-22gnu: perl-cpan-meta: Update to 2.150010....* gnu/packages/perl.scm (perl-cpan-meta): Update to 2.150010. Efraim Flashner
2019-07-22gnu: perl-clone: Update to 0.42....* gnu/packages/perl.scm (perl-clone): Update to 0.42. Efraim Flashner
2019-07-22gnu: perl-hash-merge: Update to 0.300....* gnu/packages/perl.scm (perl-hash-merge): Update to 0.300. [inputs]: Add perl-clone-choose. Efraim Flashner
2019-07-22gnu: mallard-ducktype: Run tests....* gnu/packages/python-xyz.scm (mallard-ducktype)[arguments]: Replace 'check phase to run test suite. Efraim Flashner
2019-07-22gnu: oil-shell: Update to 0.6.0...* gnu/packages/shells.scm (oil-shell): Update to 0.6.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Robert Vollmert
2019-07-21gnu: libreoffice: Fix xdg-open absolute paths....Fixes: <https://bugs.gnu.org/36728>. * gnu/packages/libreoffice.scm (libreoffice) [inputs]: Add xdg-utils. [arguments][#:phases][prepare-src]: Replace hard-coded absolute paths to xdg-open in the source with the path to xdg-open in the xdg-utils input. Chris Marusich
2019-07-21gnu: libosinfo: Update to 1.5.0....* gnu/packages/virtualization.scm (libosinfo): Update to 1.5.0. [arguments]: Remove ‘disable-broken-test’ phase. [native-inputs]: Remove check. Tobias Geerinckx-Rice
2019-07-21gnu: linux-libre: Update to 5.2.2....* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.2. (linux-libre-5.2-pristine-source): Update hash. Mark H Weaver
2019-07-21gnu: linux-libre@4.19: Update to 4.19.60....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.60. (linux-libre-4.19-pristine-source): Update hash. Mark H Weaver
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